- CavalliSforzaEdwardsDistance - Class in org.corehunter.objectives.distance.measures
-
- CavalliSforzaEdwardsDistance() - Constructor for class org.corehunter.objectives.distance.measures.CavalliSforzaEdwardsDistance
-
- CavalliSforzaEdwardsDistanceBiAllelic - Class in org.corehunter.objectives.distance.measures.biallelic
-
- CavalliSforzaEdwardsDistanceBiAllelic() - Constructor for class org.corehunter.objectives.distance.measures.biallelic.CavalliSforzaEdwardsDistanceBiAllelic
-
- computeDistance(int, int, CoreHunterData) - Method in class org.corehunter.objectives.distance.measures.AbstractDistanceMeasure
-
Compute distance.
- computeDistance(int, int, CoreHunterData) - Method in class org.corehunter.objectives.distance.measures.biallelic.CavalliSforzaEdwardsDistanceBiAllelic
-
- computeDistance(int, int, CoreHunterData) - Method in class org.corehunter.objectives.distance.measures.biallelic.ModifiedRogersDistanceBiAllelic
-
- computeDistance(int, int, CoreHunterData) - Method in class org.corehunter.objectives.distance.measures.CavalliSforzaEdwardsDistance
-
- computeDistance(int, int, CoreHunterData) - Method in class org.corehunter.objectives.distance.measures.GowerDistance
-
- computeDistance(int, int, CoreHunterData) - Method in class org.corehunter.objectives.distance.measures.ModifiedRogersDistance
-
- CoreHunter - Class in org.corehunter
-
A facade for executing Core Hunter searches.
- CoreHunter() - Constructor for class org.corehunter.CoreHunter
-
- CoreHunter(CoreHunterExecutionMode) - Constructor for class org.corehunter.CoreHunter
-
Create Core Hunter facade with the specified mode.
- CoreHunterArguments - Class in org.corehunter
-
- CoreHunterArguments(CoreHunterData, int, CoreHunterObjectiveType) - Constructor for class org.corehunter.CoreHunterArguments
-
Creates a single objective configuration with no defined measure.
- CoreHunterArguments(CoreHunterData, int, CoreHunterObjectiveType, CoreHunterMeasure) - Constructor for class org.corehunter.CoreHunterArguments
-
Creates a single objective configuration.
- CoreHunterArguments(CoreHunterData, int, List<CoreHunterObjective>) - Constructor for class org.corehunter.CoreHunterArguments
-
Creates a single- or multi-objective configuration.
- CoreHunterArguments(CoreHunterData, int, List<CoreHunterObjective>, Set<Integer>) - Constructor for class org.corehunter.CoreHunterArguments
-
Creates a single- or multi-objective configuration with a set of always selected IDs.
- CoreHunterArguments(CoreHunterData, int, List<CoreHunterObjective>, Set<Integer>, Set<Integer>) - Constructor for class org.corehunter.CoreHunterArguments
-
Creates a single- or multi-objective configuration with a set of always and/or never selected IDs.
- CoreHunterArguments(CoreHunterData, int, List<CoreHunterObjective>, Set<Integer>, Set<Integer>, boolean) - Constructor for class org.corehunter.CoreHunterArguments
-
Creates a single- or multi-objective configuration with set of always and/or never selected IDs.
- CoreHunterConstants - Class in org.corehunter.util
-
Constants used by Core Hunter.
- CoreHunterConstants() - Constructor for class org.corehunter.util.CoreHunterConstants
-
- CoreHunterData - Class in org.corehunter.data
-
Combines all data used in Core Hunter.
- CoreHunterData(FrequencyGenotypeData, FeatureData, DistanceMatrixData) - Constructor for class org.corehunter.data.CoreHunterData
-
Initialize Core Hunter data consisting of genotypic data, phenotypic
traits and/or a precomputed distance matrix.
- CoreHunterData(FrequencyGenotypeData) - Constructor for class org.corehunter.data.CoreHunterData
-
Initialize Core Hunter data consisting only of genotypic data.
- CoreHunterData(FeatureData) - Constructor for class org.corehunter.data.CoreHunterData
-
Initialize Core Hunter data consisting only of phenotypicData data.
- CoreHunterData(DistanceMatrixData) - Constructor for class org.corehunter.data.CoreHunterData
-
Initialize Core Hunter data consisting only of distances data.
- CoreHunterDataType - Enum in org.corehunter.data
-
- CoreHunterException - Exception in org.corehunter.exceptions
-
- CoreHunterException() - Constructor for exception org.corehunter.exceptions.CoreHunterException
-
- CoreHunterException(String) - Constructor for exception org.corehunter.exceptions.CoreHunterException
-
- CoreHunterException(String, Throwable) - Constructor for exception org.corehunter.exceptions.CoreHunterException
-
- CoreHunterException(Throwable) - Constructor for exception org.corehunter.exceptions.CoreHunterException
-
- CoreHunterExecutionMode - Enum in org.corehunter
-
Available execution modes.
- CoreHunterListener - Interface in org.corehunter
-
Extends SearchListener with CoreHunter specific steps.
- CoreHunterMeasure - Enum in org.corehunter
-
Available objective measures
- CoreHunterObjective - Class in org.corehunter
-
Defines the objective by providing the objective type, optional measure and optional weight.
- CoreHunterObjective(CoreHunterObjectiveType) - Constructor for class org.corehunter.CoreHunterObjective
-
Creates a Core Hunter objective with for specific object type with no defined measure.
- CoreHunterObjective(CoreHunterObjectiveType, CoreHunterMeasure) - Constructor for class org.corehunter.CoreHunterObjective
-
Creates a Core Hunter objective with for specific object type and measure.
- CoreHunterObjective(CoreHunterObjectiveType, double) - Constructor for class org.corehunter.CoreHunterObjective
-
Creates a Core Hunter objective with for specific object type and weight with no defined measure.
- CoreHunterObjective(CoreHunterObjectiveType, CoreHunterMeasure, double) - Constructor for class org.corehunter.CoreHunterObjective
-
Creates a Core Hunter objective with for specific object type, measure and weight.
- CoreHunterObjective(CoreHunterObjectiveType, double, Range<Double>) - Constructor for class org.corehunter.CoreHunterObjective
-
Creates a Core Hunter objective with for specific object type, weight and normalization range.
- CoreHunterObjective(CoreHunterObjectiveType, CoreHunterMeasure, double, Range<Double>) - Constructor for class org.corehunter.CoreHunterObjective
-
Creates a Core Hunter objective with for specific object type, measure, weight and normalization range.
- CoreHunterObjective(CoreHunterObjective) - Constructor for class org.corehunter.CoreHunterObjective
-
Creates a CoreHunter Objective from another objective.
- CoreHunterObjectiveType - Enum in org.corehunter
-
Available objective types
- Coverage - Class in org.corehunter.objectives
-
- Coverage() - Constructor for class org.corehunter.objectives.Coverage
-
- CoverageBiAllelic - Class in org.corehunter.objectives.biallelic
-
- CoverageBiAllelic() - Constructor for class org.corehunter.objectives.biallelic.CoverageBiAllelic
-
- CoverageEvaluation - Class in org.corehunter.objectives.eval
-
- CoverageEvaluation(Collection<Integer>, FrequencyGenotypeData) - Constructor for class org.corehunter.objectives.eval.CoverageEvaluation
-
- CoverageEvaluation(AllelicDiversityEvaluation, Set<Integer>, Set<Integer>, FrequencyGenotypeData) - Constructor for class org.corehunter.objectives.eval.CoverageEvaluation
-
- createArguments(CoreHunterData, int, CoreHunterObjective[], int[], int[], boolean) - Static method in class org.corehunter.API
-
- createBiparentalGenotypeData(byte[][], String[], String[], String[]) - Static method in class org.corehunter.API
-
- createDefaultGenotypeData(String[][], String[], String[], String[]) - Static method in class org.corehunter.API
-
- createDefaultObjective(CoreHunterData) - Static method in class org.corehunter.API
-
Creates a default allowed objective for the data.
- createDefaultObjective(CoreHunterData, List<CoreHunterObjective>) - Static method in class org.corehunter.API
-
Creates a default allowed objective for the data given a list existing
objectives.
- createDefaultObjectives(CoreHunterData) - Static method in class org.corehunter.API
-
Creates a list of default objectives, one for each type of data available, with equal weights.
- createDistanceMatrixData(double[][], String[], String[]) - Static method in class org.corehunter.API
-
- createFrequencyGenotypeData(double[][], String[], String[], String[], String[]) - Static method in class org.corehunter.API
-
- createFromAbbreviation(String) - Static method in enum org.corehunter.CoreHunterMeasure
-
Get Core Hunter measure from its abbreviation.
- createFromAbbreviation(String) - Static method in enum org.corehunter.CoreHunterObjectiveType
-
Get Core Hunter objective type from its abbreviation.
- createObjective(String, String, double) - Static method in class org.corehunter.API
-
- createObjective(String, String, double, double, double) - Static method in class org.corehunter.API
-
- GenotypeDataFormat - Enum in org.corehunter.data
-
- getAbbreviation() - Method in enum org.corehunter.CoreHunterMeasure
-
Gets the two letter abbreviation of the measure
- getAbbreviation() - Method in enum org.corehunter.CoreHunterObjectiveType
-
Gets the two letter abbreviation of the type
- getAllAllowedObjectives(CoreHunterData) - Static method in class org.corehunter.API
-
Creates a list of all possible Core Hunter objectives for a given data object, with equal weights.
- getAlleleFrequencies(FrequencyGenotypeData) - Static method in class org.corehunter.API
-
- getAlleleFrequency(int, int, int) - Method in interface org.corehunter.data.FrequencyGenotypeData
-
Get the relative frequency of an allele for the given entry (sample/accession).
- getAlleleFrequency(int, int, int) - Method in class org.corehunter.data.simple.SimpleBiAllelicGenotypeData
-
- getAlleleFrequency(int, int, int) - Method in class org.corehunter.data.simple.SimpleFrequencyGenotypeData
-
- getAlleleName(int, int) - Method in interface org.corehunter.data.FrequencyGenotypeData
-
Get the name of an allele, if assigned.
- getAlleleName(int, int) - Method in class org.corehunter.data.simple.SimpleBiAllelicGenotypeData
-
- getAlleleName(int, int) - Method in class org.corehunter.data.simple.SimpleFrequencyGenotypeData
-
- getAlleles(FrequencyGenotypeData) - Static method in class org.corehunter.API
-
- getAlleleScore(int, int) - Method in interface org.corehunter.data.BiAllelicGenotypeData
-
Get the allele score of the marker for the given entry.
- getAlleleScore(int, int) - Method in class org.corehunter.data.simple.SimpleBiAllelicGenotypeData
-
- getAllowedMeasures(CoreHunterData, CoreHunterObjectiveType) - Static method in class org.corehunter.API
-
Create a list of all possible Core Hunter measures for a given data object and objective type.
- getAllowedMeasures(boolean, boolean, boolean, CoreHunterObjectiveType) - Static method in class org.corehunter.API
-
Create a list of all possible Core Hunter measures for a given objective type
taking into account whether genotypes, phenotypes and/or precomputed distances
are available.
- getAllowedObjectiveTypes(CoreHunterData) - Static method in class org.corehunter.API
-
Creates a list of all possible Core Hunter objective types for a given data object.
- getAlwaysSelected() - Method in class org.corehunter.CoreHunterArguments
-
- getAverageGenotype() - Method in class org.corehunter.objectives.eval.AllelicDiversityEvaluation
-
Get average genotype.
- getClosest(int) - Method in class org.corehunter.objectives.distance.eval.NearestEntryEvaluation
-
Get the id of and distance to the closest selected item for an item with given id.
- getData() - Method in class org.corehunter.CoreHunterArguments
-
- getDistance(int, int) - Method in interface org.corehunter.data.DistanceMatrixData
-
Get the distance between two entries.
- getDistance(int, int) - Method in class org.corehunter.data.simple.SimpleDistanceMatrixData
-
- getDistance(int, int, CoreHunterData) - Method in interface org.corehunter.objectives.distance.DistanceMeasure
-
Calculates the distance between two items with given ID.
- getDistance() - Method in class org.corehunter.objectives.distance.eval.NearestEntry
-
- getDistance(int, int, CoreHunterData) - Method in class org.corehunter.objectives.distance.measures.AbstractDistanceMeasure
-
Retrieve a distance from the cache.
- getDistance(int, int, CoreHunterData) - Method in class org.corehunter.objectives.distance.measures.PrecomputedDistance
-
- getDistancesData() - Method in class org.corehunter.data.CoreHunterData
-
- getGenotypicData() - Method in class org.corehunter.data.CoreHunterData
-
- getId() - Method in class org.corehunter.objectives.distance.eval.NearestEntry
-
- getIds(Data) - Static method in class org.corehunter.API
-
- getIdsFromIndices(Data, int[]) - Static method in class org.corehunter.API
-
Get unique identifier strings from item indices.
- getIndicesFromIds(DataPojo, String[]) - Static method in class org.corehunter.API
-
Get item indices from their string identifiers.
- getListener() - Method in class org.corehunter.CoreHunter
-
- getLower() - Method in class org.corehunter.Range
-
- getMarkerName(int) - Method in interface org.corehunter.data.FrequencyGenotypeData
-
Get the name of a marker by index, if assigned.
- getMarkerName(int) - Method in class org.corehunter.data.simple.SimpleBiAllelicGenotypeData
-
- getMarkerName(int) - Method in class org.corehunter.data.simple.SimpleFrequencyGenotypeData
-
- getMarkerNames(FrequencyGenotypeData) - Static method in class org.corehunter.API
-
- getMaxSteps() - Method in class org.corehunter.CoreHunter
-
Get the maximum number of search steps.
- getMaxStepsWithoutImprovement() - Method in class org.corehunter.CoreHunter
-
Get the maximum allowed number of search steps without finding an improvement.
- getMaxTimeWithoutImprovement() - Method in class org.corehunter.CoreHunter
-
Get the maximum allowed time without finding an improvement (milliseconds).
- getMeasure() - Method in class org.corehunter.CoreHunterObjective
-
Gets the measure for this objective if defined
- getName() - Method in enum org.corehunter.CoreHunterMeasure
-
Gets the name of the measure
- getName() - Method in enum org.corehunter.CoreHunterObjectiveType
-
Gets the name of the type
- getName() - Method in enum org.corehunter.data.CoreHunterDataType
-
- getNames(Data) - Static method in class org.corehunter.API
-
- getNeverSelected() - Method in class org.corehunter.CoreHunterArguments
-
- getNormalizationRange() - Method in class org.corehunter.CoreHunterObjective
-
Gets the normalization range of this objective when used in a multi-objective configuration.
- getNormalizationRanges(CoreHunterArguments, String, int, int, long, long, long) - Static method in class org.corehunter.API
-
Get normalization ranges of all objectives in a multi-objective configuration.
- getNumberOfAlleles(int) - Method in interface org.corehunter.data.FrequencyGenotypeData
-
Get the number of alleles for a given marker.
- getNumberOfAlleles(int) - Method in class org.corehunter.data.simple.SimpleBiAllelicGenotypeData
-
- getNumberOfAlleles(int) - Method in class org.corehunter.data.simple.SimpleFrequencyGenotypeData
-
- getNumberOfMarkers() - Method in interface org.corehunter.data.FrequencyGenotypeData
-
Get the total number of markers used in this dataset.
- getNumberOfMarkers() - Method in class org.corehunter.data.simple.SimpleBiAllelicGenotypeData
-
- getNumberOfMarkers() - Method in class org.corehunter.data.simple.SimpleFrequencyGenotypeData
-
- getNumberOfObservedAllelesPerIndividual(int) - Method in interface org.corehunter.data.DefaultGenotypeData
-
Get the number of observed alleles per individual for a given marker.
- getNumberOfObservedAllelesPerIndividual(int) - Method in class org.corehunter.data.simple.SimpleDefaultGenotypeData
-
- getNumSelected() - Method in class org.corehunter.objectives.eval.AllelicDiversityEvaluation
-
- getObjectives() - Method in class org.corehunter.CoreHunterArguments
-
- getObjectiveType() - Method in class org.corehunter.CoreHunterObjective
-
Gets the objective type for this objective
- getObservedAllele(int, int, int) - Method in interface org.corehunter.data.DefaultGenotypeData
-
Get the reference of the i-th observed allele for the given marker, in the given entry.
- getObservedAllele(int, int, int) - Method in class org.corehunter.data.simple.SimpleDefaultGenotypeData
-
- getPhenotypicData() - Method in class org.corehunter.data.CoreHunterData
-
- getPrefix() - Method in class org.corehunter.listener.SimpleCoreHunterListener
-
- getRanges(SimplePhenotypeData) - Static method in class org.corehunter.API
-
- getSubsetSize() - Method in class org.corehunter.CoreHunterArguments
-
- getTimeLimit() - Method in class org.corehunter.CoreHunter
-
Get execution time limit (milliseconds).
- getTotalNumberOfAlleles() - Method in interface org.corehunter.data.FrequencyGenotypeData
-
Get the total number of allele across all markers.
- getTotalNumberOfAlleles() - Method in class org.corehunter.data.simple.SimpleBiAllelicGenotypeData
-
- getTotalNumberOfAlleles() - Method in class org.corehunter.data.simple.SimpleFrequencyGenotypeData
-
- getUpper() - Method in class org.corehunter.Range
-
- getValidMeasures(CoreHunterObjectiveType) - Method in class org.corehunter.data.CoreHunterData
-
- getValidObjectiveTypes() - Method in class org.corehunter.data.CoreHunterData
-
- getValue() - Method in class org.corehunter.objectives.distance.eval.NearestEntryEvaluation
-
Compute average distance from each registered item to closest selected item.
- getValue() - Method in class org.corehunter.objectives.eval.CoverageEvaluation
-
- getValue() - Method in class org.corehunter.objectives.eval.HeterozygousLociEvaluation
-
- getValue() - Method in class org.corehunter.objectives.eval.ShannonEvaluation
-
- getWeight() - Method in class org.corehunter.CoreHunterObjective
-
Gets the relative weight of this objective when used in conjunction with another objective.
- GowerDistance - Class in org.corehunter.objectives.distance.measures
-
- GowerDistance() - Constructor for class org.corehunter.objectives.distance.measures.GowerDistance
-
- sampleCore(CoreHunterArguments, String, int, int, long, long, long, boolean) - Static method in class org.corehunter.API
-
Sample a core collection.
- searchStarted(Search<? extends SubsetSolution>) - Method in class org.corehunter.listener.SimpleCoreHunterListener
-
- searchStopped(Search<? extends SubsetSolution>) - Method in class org.corehunter.listener.SimpleCoreHunterListener
-
- setListener(CoreHunterListener) - Method in class org.corehunter.CoreHunter
-
- setMaxSteps(long) - Method in class org.corehunter.CoreHunter
-
Sets the maximum number of search steps.
- setMaxStepsWithoutImprovement(long) - Method in class org.corehunter.CoreHunter
-
Sets the maximum allowed number of search steps without finding an improvement.
- setMaxTimeWithoutImprovement(long) - Method in class org.corehunter.CoreHunter
-
Sets the maximum time without finding any improvements (in milliseconds).
- setMeasure(CoreHunterMeasure) - Method in class org.corehunter.CoreHunterObjective
-
Gets the measure for this objective if defined
- setMissingValuesPolicy(MissingValuesPolicy) - Method in interface org.corehunter.objectives.distance.DistanceMeasure
-
Determines the contribution of variables (markers/features)
with missing values to the distance between two items.
- setMissingValuesPolicy(MissingValuesPolicy) - Method in class org.corehunter.objectives.distance.measures.AbstractDistanceMeasure
-
- setMissingValuesPolicy(MissingValuesPolicy) - Method in class org.corehunter.objectives.distance.measures.PrecomputedDistance
-
- setNormalizationRange(Range<Double>) - Method in class org.corehunter.CoreHunterObjective
-
Sets the normalization range of this objective when used in a multi-objective configuration.
- setObjectiveType(CoreHunterObjectiveType) - Method in class org.corehunter.CoreHunterObjective
-
Sets the objective type for this objective
- setPrefix(String) - Method in class org.corehunter.listener.SimpleCoreHunterListener
-
- setSeed(long) - Method in class org.corehunter.CoreHunter
-
- setTimeLimit(long) - Method in class org.corehunter.CoreHunter
-
Sets the absolute time limit (in milliseconds).
- setWeight(double) - Method in class org.corehunter.CoreHunterObjective
-
Sets the relative weight of this objective when used in conjunction with another objective.
- Shannon - Class in org.corehunter.objectives
-
- Shannon() - Constructor for class org.corehunter.objectives.Shannon
-
- ShannonBiAllelic - Class in org.corehunter.objectives.biallelic
-
- ShannonBiAllelic() - Constructor for class org.corehunter.objectives.biallelic.ShannonBiAllelic
-
- ShannonEvaluation - Class in org.corehunter.objectives.eval
-
- ShannonEvaluation(Collection<Integer>, FrequencyGenotypeData) - Constructor for class org.corehunter.objectives.eval.ShannonEvaluation
-
- ShannonEvaluation(AllelicDiversityEvaluation, Set<Integer>, Set<Integer>, FrequencyGenotypeData) - Constructor for class org.corehunter.objectives.eval.ShannonEvaluation
-
- SimpleBiAllelicGenotypeData - Class in org.corehunter.data.simple
-
- SimpleBiAllelicGenotypeData(SimpleEntity[], String[], byte[][]) - Constructor for class org.corehunter.data.simple.SimpleBiAllelicGenotypeData
-
Create data with name "Biallelic marker data".
- SimpleBiAllelicGenotypeData(String, SimpleEntity[], String[], byte[][]) - Constructor for class org.corehunter.data.simple.SimpleBiAllelicGenotypeData
-
Create data with given dataset name, item headers, marker names and allele scores.
- SimpleCoreHunterListener - Class in org.corehunter.listener
-
- SimpleCoreHunterListener() - Constructor for class org.corehunter.listener.SimpleCoreHunterListener
-
- SimpleCoreHunterListener(PrintStream) - Constructor for class org.corehunter.listener.SimpleCoreHunterListener
-
- SimpleDefaultGenotypeData - Class in org.corehunter.data.simple
-
- SimpleDefaultGenotypeData(SimpleEntity[], String[], String[][][]) - Constructor for class org.corehunter.data.simple.SimpleDefaultGenotypeData
-
Create data with name "Default marker data".
- SimpleDefaultGenotypeData(String, SimpleEntity[], String[], String[][][]) - Constructor for class org.corehunter.data.simple.SimpleDefaultGenotypeData
-
Create data with given dataset name, item headers, marker/allele names
and allele frequencies.
- SimpleDistanceMatrixData - Class in org.corehunter.data.simple
-
Simple implementation of a distance matrix that stores all values in a
two-dimensional double array.
- SimpleDistanceMatrixData(SimpleEntity[], double[][]) - Constructor for class org.corehunter.data.simple.SimpleDistanceMatrixData
-
Create distance matrix data given the item headers and distances.
- SimpleDistanceMatrixData(String, SimpleEntity[], double[][]) - Constructor for class org.corehunter.data.simple.SimpleDistanceMatrixData
-
Create distance matrix data given the dataset name, item headers and
distances.
- SimpleFrequencyGenotypeData - Class in org.corehunter.data.simple
-
- SimpleFrequencyGenotypeData(SimpleEntity[], String[], String[][], double[][][]) - Constructor for class org.corehunter.data.simple.SimpleFrequencyGenotypeData
-
Create data with name "Allele frequency data".
- SimpleFrequencyGenotypeData(String, SimpleEntity[], String[], String[][], double[][][]) - Constructor for class org.corehunter.data.simple.SimpleFrequencyGenotypeData
-
Create data with given dataset name, item headers, marker/allele names
and allele frequencies.
- SimplePhenotypeData - Class in org.corehunter.data.simple
-
- SimplePhenotypeData(String, Feature[], Object[][]) - Constructor for class org.corehunter.data.simple.SimplePhenotypeData
-
- SimplePhenotypeData(String, List<? extends Feature>, List<List<Object>>) - Constructor for class org.corehunter.data.simple.SimplePhenotypeData
-
- SimplePhenotypeData(String, List<? extends Feature>, List<SimpleEntity>, List<List<Object>>) - Constructor for class org.corehunter.data.simple.SimplePhenotypeData
-
- SimplePhenotypeData(String, List<? extends Feature>, SimpleEntity[], Object[][]) - Constructor for class org.corehunter.data.simple.SimplePhenotypeData
-
- SimplePhenotypeData(String, String, Feature[], Object[][]) - Constructor for class org.corehunter.data.simple.SimplePhenotypeData
-
- SimplePhenotypeData(String, String, List<? extends Feature>, List<List<Object>>) - Constructor for class org.corehunter.data.simple.SimplePhenotypeData
-
- SimplePhenotypeData(String, String, List<? extends Feature>, List<SimpleEntity>, List<List<Object>>) - Constructor for class org.corehunter.data.simple.SimplePhenotypeData
-
- SimplePhenotypeData(String, String, List<? extends Feature>, SimpleEntity[], Object[][]) - Constructor for class org.corehunter.data.simple.SimplePhenotypeData
-
- SimplePhenotypeData(ArrayFeatureData) - Constructor for class org.corehunter.data.simple.SimplePhenotypeData
-
- StringUtils - Class in org.corehunter.util
-
- valueOf(String) - Static method in enum org.corehunter.CoreHunterExecutionMode
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.corehunter.CoreHunterMeasure
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.corehunter.CoreHunterObjectiveType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.corehunter.data.CoreHunterDataType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.corehunter.data.GenotypeDataFormat
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.corehunter.objectives.distance.measures.MissingValuesPolicy
-
Returns the enum constant of this type with the specified name.
- values() - Static method in enum org.corehunter.CoreHunterExecutionMode
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.corehunter.CoreHunterMeasure
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.corehunter.CoreHunterObjectiveType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.corehunter.data.CoreHunterDataType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.corehunter.data.GenotypeDataFormat
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.corehunter.objectives.distance.measures.MissingValuesPolicy
-
Returns an array containing the constants of this enum type, in
the order they are declared.