Index (psl-core 2.2.2 API)

A B C D E F G H I J K L M N O P Q R S T U V W Z

A

AbstractArithmeticRule - Class in org.linqs.psl.model.rule.arithmetic: Base class for all (first order, i.e., not ground) arithmetic rules.
AbstractArithmeticRule(ArithmeticRuleExpression, Map<SummationVariable, Formula>, String) - Constructor for class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule
AbstractBranchFormula<T extends AbstractBranchFormula<T>> - Class in org.linqs.psl.model.formula: An abstract branching formula.
AbstractBranchFormula(Formula...) - Constructor for class org.linqs.psl.model.formula.AbstractBranchFormula
AbstractGroundArithmeticRule - Class in org.linqs.psl.model.rule.arithmetic: Base class for all ground arithmetic rules.
AbstractGroundArithmeticRule(AbstractArithmeticRule, List<Float>, List<GroundAtom>, FunctionComparator, float) - Constructor for class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule
AbstractGroundArithmeticRule(AbstractArithmeticRule, float[], GroundAtom[], FunctionComparator, float) - Constructor for class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule
AbstractGroundArithmeticRule(AbstractArithmeticRule, float[], GroundAtom[], FunctionComparator, float, boolean) - Constructor for class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule
AbstractGroundLogicalRule - Class in org.linqs.psl.model.rule.logical: Base class for all ground logical rules.
AbstractGroundLogicalRule(AbstractLogicalRule, List<GroundAtom>, List<GroundAtom>, short) - Constructor for class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule
AbstractLogicalRule - Class in org.linqs.psl.model.rule.logical: Base class for all (first order, i.e., not ground) logical rules.
AbstractLogicalRule(Formula, String) - Constructor for class org.linqs.psl.model.rule.logical.AbstractLogicalRule
AbstractRule - Class in org.linqs.psl.model.rule: Base class for all (first order, i.e., not ground) rules.
AbstractRule(String) - Constructor for class org.linqs.psl.model.rule.AbstractRule
accuracy() - Method in class org.linqs.psl.evaluation.statistics.CategoricalEvaluator
accuracy() - Method in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator
activateAtoms(List<Rule>, GroundRuleStore) - Method in class org.linqs.psl.database.atom.LazyAtomManager: Activate any lazy atoms above the threshold.
activateAtoms(Set<RandomVariableAtom>, List<Rule>, GroundRuleStore) - Method in class org.linqs.psl.database.atom.LazyAtomManager: Activate a specific set of lazy atoms.
ACTIVATION_THRESHOLD_DEFAULT - Static variable in class org.linqs.psl.database.atom.LazyAtomManager: Default value for ACTIVATION_THRESHOLD_KEY property.
ACTIVATION_THRESHOLD_KEY - Static variable in class org.linqs.psl.database.atom.LazyAtomManager: The minimum value an atom must take for it to be activated.
activeIterator - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
ADAGRAD_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.em.HardEM
ADAGRAD_KEY - Static variable in class org.linqs.psl.application.learning.weight.em.HardEM: Key for Boolean property that indicates whether to use AdaGrad subgradient scaling, the adaptive subgradient algorithm of John Duchi, Elad Hazan, Yoram Singer (JMLR 2010).
Add - Class in org.linqs.psl.model.rule.arithmetic.expression.coefficient
Add(Coefficient, Coefficient) - Constructor for class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Add
add(GroundRule, ADMMObjectiveTerm) - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore
add(float) - Method in class org.linqs.psl.reasoner.function.GeneralFunction: Add a constant to the sum.
add(float, FunctionTerm) - Method in class org.linqs.psl.reasoner.function.GeneralFunction: Add a general term to the sum.
add(GroundRule, ConstraintBlockerTerm) - Method in class org.linqs.psl.reasoner.term.blocker.ConstraintBlockerTermStore
add(GroundRule, T) - Method in class org.linqs.psl.reasoner.term.MemoryTermStore
add(GroundRule, T) - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore
add(GroundRule, T) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
add(GroundRule, T) - Method in interface org.linqs.psl.reasoner.term.TermStore: Add a term to the store that was generated from the given ground rule.
add(float) - Method in class org.linqs.psl.util.FloatMatrix: Scalar addition (not in-place).
add(float, boolean) - Method in class org.linqs.psl.util.FloatMatrix: Scalar addition.
addAll(VariableTypeMap) - Method in class org.linqs.psl.model.term.VariableTypeMap: Performs a shallow copy of all variable-type pairs from another VariableTypeMap to this one.
addColumnHistogram(String, SelectivityHistogram) - Method in class org.linqs.psl.database.rdbms.TableStats
addColumnSelectivity(String, double) - Method in class org.linqs.psl.database.rdbms.TableStats
addGroundRule(GroundRule) - Method in class org.linqs.psl.grounding.AtomRegisterGroundRuleStore
addGroundRule(GroundRule) - Method in interface org.linqs.psl.grounding.GroundRuleStore: Adds a GroundRule to this store.
addGroundRule(GroundRule) - Method in class org.linqs.psl.grounding.MemoryGroundRuleStore
addHistogramBounds(List<T>, List<? extends Number>) - Method in class org.linqs.psl.database.rdbms.SelectivityHistogram
addHistogramExact(Map<T, ? extends Number>) - Method in class org.linqs.psl.database.rdbms.SelectivityHistogram
addProperty(String, Object) - Static method in class org.linqs.psl.config.Config: Add a property to the configuration.
addResult(Constant[]) - Method in class org.linqs.psl.database.rdbms.RDBMSResultList
addRule(Rule) - Method in class org.linqs.psl.model.Model: Adds a Rule to this Model.
addTerm(E, float) - Method in class org.linqs.psl.reasoner.term.Hyperplane
addToPersistedCache(Set<RandomVariableAtom>) - Method in class org.linqs.psl.database.atom.PersistedAtomManager
addVariable(Variable, ConstantType) - Method in class org.linqs.psl.model.term.VariableTypeMap
addVariable(Variable, ConstantType, boolean) - Method in class org.linqs.psl.model.term.VariableTypeMap: Adds a variable-type pair to the hashmap.
ADMM_STEPS_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.em.PairedDualLearner
ADMM_STEPS_KEY - Static variable in class org.linqs.psl.application.learning.weight.em.PairedDualLearner: Key for Integer property that indicates how many steps of ADMM to run for each inner objective before each gradient iteration (parameter N in the ICML paper)
ADMMObjectiveTerm - Class in org.linqs.psl.reasoner.admm.term: A term in the objective to be optimized by an ADMMReasoner.
ADMMObjectiveTerm(Hyperplane<LocalVariable>, GroundRule) - Constructor for class org.linqs.psl.reasoner.admm.term.ADMMObjectiveTerm: Caller releases control of the hyperplane and all members of it.
ADMMReasoner - Class in org.linqs.psl.reasoner.admm: Uses an ADMM optimization method to optimize its GroundRules.
ADMMReasoner() - Constructor for class org.linqs.psl.reasoner.admm.ADMMReasoner
ADMMReasoner.InitialValue - Enum in org.linqs.psl.reasoner.admm: Possible starting values for the consensus values.
ADMMTermGenerator - Class in org.linqs.psl.reasoner.admm.term: A TermGenerator for ADMM objective terms.
ADMMTermGenerator() - Constructor for class org.linqs.psl.reasoner.admm.term.ADMMTermGenerator
ADMMTermStore - Class in org.linqs.psl.reasoner.admm.term: A TermStore specifically for ADMM terms.
ADMMTermStore() - Constructor for class org.linqs.psl.reasoner.admm.term.ADMMTermStore
ADMMTermStore(TermStore<ADMMObjectiveTerm, ?>) - Constructor for class org.linqs.psl.reasoner.admm.term.ADMMTermStore
ALLOWED_STEP_INCREASE_DEFAULT - Static variable in class org.linqs.psl.database.rdbms.QueryRewriter
ALLOWED_STEP_INCREASE_KEY - Static variable in class org.linqs.psl.database.rdbms.QueryRewriter: How much we allow the query cost (number of rows) to increase at each step.
ALLOWED_TOTAL_INCREASE_DEFAULT - Static variable in class org.linqs.psl.database.rdbms.QueryRewriter
ALLOWED_TOTAL_INCREASE_KEY - Static variable in class org.linqs.psl.database.rdbms.QueryRewriter: How much we allow the query cost (number of rows) to for new plans.
allPartitionIDs - Variable in class org.linqs.psl.database.Database
allRules - Variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication
ANONYMOUS_PARTITION_PREFIX - Static variable in class org.linqs.psl.database.rdbms.DataStoreMetadata
appendCoefficient(int, float) - Method in class org.linqs.psl.reasoner.term.Hyperplane
args - Variable in class org.linqs.psl.model.rule.arithmetic.expression.SummationAtom
args - Variable in class org.linqs.psl.reasoner.ExecutableReasoner
argumentColumns() - Method in class org.linqs.psl.database.rdbms.PredicateInfo
arguments - Variable in class org.linqs.psl.model.atom.Atom
ArithmeticRuleExpression - Class in org.linqs.psl.model.rule.arithmetic.expression: Container for components of an arithmetic rule formula.
ArithmeticRuleExpression(List<Coefficient>, List<SummationAtomOrAtom>, FunctionComparator, Coefficient) - Constructor for class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression
ArithmeticRuleExpression(List<Coefficient>, List<SummationAtomOrAtom>, FunctionComparator, Coefficient, boolean) - Constructor for class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression
ArrayUtils - Class in org.linqs.psl.util: Various static array utilities.
asColumnArray() - Method in class org.linqs.psl.util.FloatMatrix: Get a copy of this matrix's data as a 1D column-major array.
asGrid() - Method in class org.linqs.psl.util.FloatMatrix: Get a copy of this matrix's data as a 2D-array.
asRowArray() - Method in class org.linqs.psl.util.FloatMatrix: Get a copy of this matrix's data as a 1D row-major array.
asString() - Static method in class org.linqs.psl.config.Config
asString() - Method in class org.linqs.psl.model.Model: Create a model string that can be directly interpreted by the parser.
assume(Predicate, Term...) - Method in class org.linqs.psl.model.atom.QueryAtom: Have this QueryAtom assume new values.
assume(float[], int, int) - Method in class org.linqs.psl.util.FloatMatrix: Take on all the given information.
atom - Variable in exception org.linqs.psl.database.atom.PersistedAtomManager.PersistedAccessException
Atom - Class in org.linqs.psl.model.atom: A Predicate combined with the correct number of Terms as arguments.
Atom(Predicate, Term[]) - Constructor for class org.linqs.psl.model.atom.Atom: Type mismatches will throw an exception unless the types are trivially convertable like UniqueIntID and IntegerAttribute.
AtomCache - Class in org.linqs.psl.database.atom: Storage for GroundAtoms so that a Database always returns the same object for a GroundAtom.
AtomCache(Database) - Constructor for class org.linqs.psl.database.atom.AtomCache: Constructs a new AtomCache for a Database.
atomManager - Variable in class org.linqs.psl.application.inference.InferenceApplication
atomManager - Variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication: An atom manager on top of the rvDB.
AtomManager - Class in org.linqs.psl.database.atom: Provides centralization and hooks for managing the GroundAtoms that are instantiated from a Database.
AtomManager(Database) - Constructor for class org.linqs.psl.database.atom.AtomManager
atomManager - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator
atomManager - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
AtomRegisterGroundRuleStore - Class in org.linqs.psl.grounding: A GroundRuleStore that tracks every GroundRule every GroundAtom participates in.
AtomRegisterGroundRuleStore() - Constructor for class org.linqs.psl.grounding.AtomRegisterGroundRuleStore
atoms - Variable in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule
atoms - Variable in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression
Attribute - Class in org.linqs.psl.model.term: A Constant that is a value, as opposed to a unique identifier.
Attribute() - Constructor for class org.linqs.psl.model.term.Attribute
auroc() - Method in class org.linqs.psl.evaluation.statistics.RankingEvaluator: Returns area under ROC curve.
AVERAGE_STEPS_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.VotedPerceptron
AVERAGE_STEPS_KEY - Static variable in class org.linqs.psl.application.learning.weight.VotedPerceptron: Key for Boolean property that indicates whether to average all visited weights together for final output.
averageSteps - Variable in class org.linqs.psl.application.learning.weight.VotedPerceptron

B

BASE_BRACKET_SIZE_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.search.Hyperband
BASE_BRACKET_SIZE_KEY - Static variable in class org.linqs.psl.application.learning.weight.search.Hyperband: The base number of weight configurations for each brackets.
BASE_WEIGHT_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.search.grid.ContinuousRandomGridSearch
BASE_WEIGHT_KEY - Static variable in class org.linqs.psl.application.learning.weight.search.grid.ContinuousRandomGridSearch: The base weight of a rule.
BaseGridSearch - Class in org.linqs.psl.application.learning.weight.search.grid: The base for grid search-like method.
BaseGridSearch(Model, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.BaseGridSearch
BaseGridSearch(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.BaseGridSearch
baseStepSize - Variable in class org.linqs.psl.application.learning.weight.VotedPerceptron
baseToString() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule
baseToString() - Method in interface org.linqs.psl.model.rule.GroundRule: Get a to string for the base of the rule without weight or square.
baseToString() - Method in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule
baseToString() - Method in class org.linqs.psl.model.rule.misc.GroundLinearConstraint
baseToString() - Method in class org.linqs.psl.model.rule.misc.GroundValueConstraint
blas_sdot(FloatMatrix) - Method in class org.linqs.psl.util.FloatMatrix: Call sdot from BLAS.
blas_sgemm(FloatMatrix, FloatMatrix, boolean, boolean, float, float) - Method in class org.linqs.psl.util.FloatMatrix: Call sgemm from BLAS.
body - Variable in class org.linqs.psl.model.formula.Implication: The fuzzy singletons that constitute the body of the rule
BOOLEAN_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPseudoLikelihood: Default value for BOOLEAN_KEY
BOOLEAN_KEY - Static variable in class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPseudoLikelihood: Boolean property.
BooleanMaxWalkSat - Class in org.linqs.psl.reasoner.bool: Implementation of MaxWalkSat, which searches for a good Boolean assignment of truth values.
BooleanMaxWalkSat() - Constructor for class org.linqs.psl.reasoner.bool.BooleanMaxWalkSat
BooleanMCSat - Class in org.linqs.psl.reasoner.bool: Implementation of MC-Sat, which approximates the marginal probability that each atom has value 1 in a Boolean domain.
BooleanMCSat() - Constructor for class org.linqs.psl.reasoner.bool.BooleanMCSat
BUCKET_USAGE_GUESS - Static variable in class org.linqs.psl.database.rdbms.SelectivityHistogram: A guess about how much of a bucket is in use when there is some overlap.
build(Object) - Static method in class org.linqs.psl.util.HashCode
build(int, Object) - Static method in class org.linqs.psl.util.HashCode
build(int, int, Object) - Static method in class org.linqs.psl.util.HashCode
build(Object[]) - Static method in class org.linqs.psl.util.HashCode
build(int, Object[]) - Static method in class org.linqs.psl.util.HashCode
build(int, int, Object[]) - Static method in class org.linqs.psl.util.HashCode
bulkCopy(String, String, boolean) - Method in class org.linqs.psl.database.loading.Inserter: Import the file directly into the database.
bulkCopy(String, String, boolean, PredicateInfo, Partition) - Method in interface org.linqs.psl.database.rdbms.driver.DatabaseDriver: Perform a bulk copy operation to load the file directly into the database.
bulkCopy(String, String, boolean, PredicateInfo, Partition) - Method in class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver
bulkCopy(String, String, boolean, PredicateInfo, Partition) - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver
bulkCopy(String, String, boolean) - Method in class org.linqs.psl.database.rdbms.RDBMSInserter
bytesToHex(byte[]) - Static method in class org.linqs.psl.util.Hash

C

c1 - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Add
c1 - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Divide
c1 - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Max
c1 - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Min
c1 - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Multiply
c1 - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Subtract
c2 - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Add
c2 - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Divide
c2 - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Max
c2 - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Min
c2 - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Multiply
c2 - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Subtract
C_DEFAULT - Static variable in class org.linqs.psl.reasoner.dcd.DCDReasoner
C_KEY - Static variable in class org.linqs.psl.reasoner.dcd.DCDReasoner
cache - Variable in class org.linqs.psl.database.atom.AtomCache
cache - Variable in class org.linqs.psl.database.Database: The atom cache for this database.
cacheIterationComplete() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore: A callback for the non-initial round iterator.
callReasoner() - Method in class org.linqs.psl.reasoner.ExecutableReasoner
Cardinality - Class in org.linqs.psl.model.rule.arithmetic.expression.coefficient: The number of substitutions made for a SummationVariable in a grounding.
Cardinality(SummationVariable) - Constructor for class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Cardinality
CategoricalEvaluator - Class in org.linqs.psl.evaluation.statistics: Compute various statistics on data known to be categorical.
CategoricalEvaluator() - Constructor for class org.linqs.psl.evaluation.statistics.CategoricalEvaluator
CategoricalEvaluator(int...) - Constructor for class org.linqs.psl.evaluation.statistics.CategoricalEvaluator
CategoricalEvaluator(String, int...) - Constructor for class org.linqs.psl.evaluation.statistics.CategoricalEvaluator
CategoricalEvaluator(CategoricalEvaluator.RepresentativeMetric, int...) - Constructor for class org.linqs.psl.evaluation.statistics.CategoricalEvaluator
CategoricalEvaluator.RepresentativeMetric - Enum in org.linqs.psl.evaluation.statistics
CATEGORY_INDEXES_KEY - Static variable in class org.linqs.psl.evaluation.statistics.CategoricalEvaluator: The index of the arguments in the predicate (delimited by colons).
checkSchema() - Method in class org.linqs.psl.model.rule.arithmetic.expression.SummationAtom: Verifies that this atom has valid arguments.
choleskyDecomposition() - Method in class org.linqs.psl.util.FloatMatrix: Cholesky factorization (not in-place).
choleskyDecomposition(boolean) - Method in class org.linqs.psl.util.FloatMatrix: Compute the Cholesky factorization of this real symmetric positive definite matrix.
chooseNextLocation() - Method in class org.linqs.psl.application.learning.weight.search.grid.BaseGridSearch: Choose the next location we will search.
chooseNextLocation() - Method in class org.linqs.psl.application.learning.weight.search.grid.ContinuousRandomGridSearch
chooseNextLocation() - Method in class org.linqs.psl.application.learning.weight.search.grid.GridSearch
chooseNextLocation() - Method in class org.linqs.psl.application.learning.weight.search.grid.GuidedRandomGridSearch
chooseNextLocation() - Method in class org.linqs.psl.application.learning.weight.search.grid.RandomGridSearch
chooseNextLocation() - Method in class org.linqs.psl.application.learning.weight.search.grid.RankSearch
CLASS_LIST_KEY - Static variable in class org.linqs.psl.config.Config
CLASS_LIST_PROPS - Static variable in class org.linqs.psl.config.Config
CLEANUP_INPUT_DEFAULT - Static variable in class org.linqs.psl.reasoner.ExecutableReasoner
CLEANUP_INPUT_KEY - Static variable in class org.linqs.psl.reasoner.ExecutableReasoner: Key for boolean property for whether to delete the input file to external the reasoner on close.
CLEANUP_OUTPUT_DEFAULT - Static variable in class org.linqs.psl.reasoner.ExecutableReasoner
CLEANUP_OUTPUT_KEY - Static variable in class org.linqs.psl.reasoner.ExecutableReasoner: Key for boolean property for whether to delete the output file to external the reasoner on close.
cleanupInput - Variable in class org.linqs.psl.reasoner.ExecutableReasoner
cleanupOutput - Variable in class org.linqs.psl.reasoner.ExecutableReasoner
clear() - Static method in class org.linqs.psl.config.Config: Remove all properties from the configuration.
clear() - Method in class org.linqs.psl.model.Model
clear() - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore
clear() - Method in class org.linqs.psl.reasoner.term.blocker.ConstraintBlockerTermStore
clear() - Method in class org.linqs.psl.reasoner.term.MemoryTermStore
clear() - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore
clear() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
clear() - Method in interface org.linqs.psl.reasoner.term.TermStore: Remove any existing terms and prepare for a new set.
clearException() - Method in class org.linqs.psl.util.Parallel.Worker
clearForTesting() - Static method in class org.linqs.psl.model.predicate.Predicate: Clear out all active predicates.
clearProperty(String) - Static method in class org.linqs.psl.config.Config: Remove a property from the configuration.
CLIP_NEGATIVE_WEIGHTS_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.VotedPerceptron
CLIP_NEGATIVE_WEIGHTS_KEY - Static variable in class org.linqs.psl.application.learning.weight.VotedPerceptron: If true, then weight will not be allowed to go negative (clipped at zero).
clipNegativeWeights - Variable in class org.linqs.psl.application.learning.weight.VotedPerceptron
close() - Method in class org.linqs.psl.application.inference.DCDStreamingInference
close() - Method in class org.linqs.psl.application.inference.InferenceApplication
close() - Method in class org.linqs.psl.application.inference.SGDStreamingInference
close() - Method in class org.linqs.psl.application.learning.weight.search.grid.InitialWeightGridSearch
close() - Method in class org.linqs.psl.application.learning.weight.search.grid.InitialWeightRandomGridSearch
close() - Method in class org.linqs.psl.application.learning.weight.search.grid.InitialWeightRankSearch
close() - Method in class org.linqs.psl.application.learning.weight.search.InitialWeightHyperband
close() - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication
close() - Method in interface org.linqs.psl.application.ModelApplication: Releases all resources used by this ModelApplication.
close() - Method in interface org.linqs.psl.database.DataStore: Releases all resources and locks obtained by this DataStore.
close() - Method in interface org.linqs.psl.database.QueryResultIterable: Close the associated iterator and any open queries.
close() - Method in interface org.linqs.psl.database.rdbms.driver.DatabaseDriver: Close out any outstanding connections and cleanup.
close() - Method in class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver
close() - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver
close() - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase
close() - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore
close() - Method in class org.linqs.psl.database.rdbms.RDBMSResultList
close() - Method in interface org.linqs.psl.database.WritableDatabase: Releases the Partitions used by this Database.
close() - Method in class org.linqs.psl.grounding.AtomRegisterGroundRuleStore
close() - Method in interface org.linqs.psl.grounding.GroundRuleStore: Release any memory held by the store.
close() - Method in class org.linqs.psl.grounding.MemoryGroundRuleStore
close() - Method in class org.linqs.psl.reasoner.admm.ADMMReasoner
close() - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore
close() - Method in class org.linqs.psl.reasoner.bool.BooleanMaxWalkSat
close() - Method in class org.linqs.psl.reasoner.bool.BooleanMCSat
close() - Method in class org.linqs.psl.reasoner.dcd.DCDReasoner
close() - Method in class org.linqs.psl.reasoner.ExecutableReasoner
close() - Method in interface org.linqs.psl.reasoner.Reasoner: Releases all resources acquired by this Reasoner.
close() - Method in class org.linqs.psl.reasoner.sgd.SGDReasoner
close() - Method in class org.linqs.psl.reasoner.term.blocker.ConstraintBlockerTermStore
close() - Method in class org.linqs.psl.reasoner.term.MemoryTermStore
close() - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore
close() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator
close() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator
close() - Method in interface org.linqs.psl.reasoner.term.streaming.StreamingIterator
close() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
close() - Method in interface org.linqs.psl.reasoner.term.TermStore: Close down the term store, it will not be used any more.
close() - Method in class org.linqs.psl.util.Parallel.Worker: Cleanup anything.
closed - Variable in class org.linqs.psl.database.Database: Keeps track of the open / closed status of this database.
closed - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator
closed - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator
Coefficient - Class in org.linqs.psl.model.rule.arithmetic.expression.coefficient: Numeric coefficient in a ArithmeticRuleExpression.
Coefficient() - Constructor for class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Coefficient
coefficients - Variable in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule
coefficients - Variable in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression
coefficients - Variable in class org.linqs.psl.reasoner.admm.term.HyperplaneTerm
coefficients - Variable in class org.linqs.psl.reasoner.admm.term.SquaredHyperplaneTerm
collect() - Static method in class org.linqs.psl.util.RuntimeStats: Begin the process of collecting stats.
COLLECT_KEY - Static variable in class org.linqs.psl.util.RuntimeStats: Periodically collect stats on the JVM.
COLLECTION_PERIOD_DEFAULT - Static variable in class org.linqs.psl.util.RuntimeStats
COLLECTION_PERIOD_KEY - Static variable in class org.linqs.psl.util.RuntimeStats: The period (in ms) of stats collection.
collectVariables(VariableTypeMap) - Method in class org.linqs.psl.model.atom.GroundAtom
collectVariables(VariableTypeMap) - Method in class org.linqs.psl.model.atom.QueryAtom
collectVariables(VariableTypeMap) - Method in class org.linqs.psl.model.formula.AbstractBranchFormula
collectVariables(VariableTypeMap) - Method in interface org.linqs.psl.model.formula.Formula: Adds the Variables
collectVariables(VariableTypeMap) - Method in class org.linqs.psl.model.formula.Implication
collectVariables(VariableTypeMap) - Method in class org.linqs.psl.model.formula.Negation
columnVector(float[]) - Static method in class org.linqs.psl.util.FloatMatrix
columnVector(float[], boolean) - Static method in class org.linqs.psl.util.FloatMatrix
commit(RandomVariableAtom) - Method in class org.linqs.psl.database.Database
commit(Iterable<RandomVariableAtom>) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase
commit(Iterable<RandomVariableAtom>, int) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase
commit(RandomVariableAtom) - Method in interface org.linqs.psl.database.WritableDatabase: Persists a RandomVariableAtom in this Database's write Partition.
commit(Iterable<RandomVariableAtom>) - Method in interface org.linqs.psl.database.WritableDatabase: A batch form or commit().
commit(Iterable<RandomVariableAtom>, int) - Method in interface org.linqs.psl.database.WritableDatabase: A form of commit() that allows the caller to choose the specific partition the atoms are comitted to.
commitCachedAtoms() - Method in class org.linqs.psl.database.Database
commitCachedAtoms(boolean) - Method in class org.linqs.psl.database.Database
commitCachedAtoms() - Method in interface org.linqs.psl.database.WritableDatabase: Commit all RandomVariableAtoms in the database's cache.
commitCachedAtoms(boolean) - Method in interface org.linqs.psl.database.WritableDatabase: Commit all RandomVariableAtoms in the database's cache.
commitPersistedAtoms() - Method in class org.linqs.psl.database.atom.PersistedAtomManager: Commit all the atoms in this manager's persisted cache.
comparator - Variable in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule
comparator - Variable in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression
compare(double, double) - Static method in class org.linqs.psl.util.MathUtils
compare(double, double, double) - Static method in class org.linqs.psl.util.MathUtils: A comparison method with the Comparator integer return semantics.
compare(float, float) - Static method in class org.linqs.psl.util.MathUtils
compare(float, float, float) - Static method in class org.linqs.psl.util.MathUtils: A comparison method with the Comparator integer return semantics.
compareTo(GroundAtom) - Method in class org.linqs.psl.model.atom.GroundAtom: First order by value (descending), the predicate name (natural), and then the arguments (in order).
compareTo(Term) - Method in class org.linqs.psl.model.term.DoubleAttribute
compareTo(Term) - Method in class org.linqs.psl.model.term.IntegerAttribute
compareTo(Term) - Method in class org.linqs.psl.model.term.LongAttribute
compareTo(Term) - Method in class org.linqs.psl.model.term.StringAttribute
compareTo(Term) - Method in class org.linqs.psl.model.term.UniqueIntID
compareTo(Term) - Method in class org.linqs.psl.model.term.UniqueStringID
compareTo(Term) - Method in class org.linqs.psl.model.term.Variable: Just use the name for comparison.
completeInitialize() - Method in class org.linqs.psl.application.inference.InferenceApplication: Complete the initialization process.
completeInitialize() - Method in class org.linqs.psl.application.inference.LazyMPEInference
completeInitialize() - Method in class org.linqs.psl.application.inference.MPEInference
compute(TrainingMap) - Method in class org.linqs.psl.evaluation.statistics.CategoricalEvaluator
compute(TrainingMap, StandardPredicate) - Method in class org.linqs.psl.evaluation.statistics.CategoricalEvaluator
compute(TrainingMap) - Method in class org.linqs.psl.evaluation.statistics.ContinuousEvaluator
compute(TrainingMap, StandardPredicate) - Method in class org.linqs.psl.evaluation.statistics.ContinuousEvaluator
compute(TrainingMap) - Method in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator
compute(TrainingMap, StandardPredicate) - Method in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator
compute(TrainingMap) - Method in class org.linqs.psl.evaluation.statistics.Evaluator: One of the main computation method.
compute(TrainingMap, StandardPredicate) - Method in class org.linqs.psl.evaluation.statistics.Evaluator: One of the main computation method.
compute(Database, Database, StandardPredicate, boolean) - Method in class org.linqs.psl.evaluation.statistics.Evaluator: A convenience call for those who don't want to create a training map directly.
compute(Database, Database, StandardPredicate) - Method in class org.linqs.psl.evaluation.statistics.Evaluator
compute(TrainingMap) - Method in class org.linqs.psl.evaluation.statistics.RankingEvaluator
compute(TrainingMap, StandardPredicate) - Method in class org.linqs.psl.evaluation.statistics.RankingEvaluator
compute(String, String) - Static method in class org.linqs.psl.util.Hash
compute(byte[], String) - Static method in class org.linqs.psl.util.Hash
COMPUTE_PERIOD_DEFAULT - Static variable in class org.linqs.psl.reasoner.admm.ADMMReasoner
COMPUTE_PERIOD_KEY - Static variable in class org.linqs.psl.reasoner.admm.ADMMReasoner: Compute some stats about the optimization and log them to TRACE once for each period.
computeExpectedIncompatibility() - Method in class org.linqs.psl.application.learning.weight.em.PairedDualLearner
computeExpectedIncompatibility() - Method in class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPiecewisePseudoLikelihood: Compute the expected incompatibility using the piecewisepseudolikelihood.
computeExpectedIncompatibility() - Method in class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPseudoLikelihood: Computes the expected incompatibility using the pseudolikelihood.
computeExpectedIncompatibility() - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication: Compute the incompatibility in the model.
computeLatentMPEState() - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication
computeLoss() - Method in class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPiecewisePseudoLikelihood
computeLoss() - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication: Internal method for computing the loss at the current point before taking a step.
computeMPEState() - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication
computeObjective(VariableTermStore<SGDObjectiveTerm, RandomVariableAtom>, float[]) - Method in class org.linqs.psl.reasoner.sgd.SGDReasoner
computeObservedIncompatibility() - Method in class org.linqs.psl.application.learning.weight.em.PairedDualLearner
computeObservedIncompatibility() - Method in class org.linqs.psl.application.learning.weight.maxlikelihood.LazyMaxLikelihoodMPE
computeObservedIncompatibility() - Method in class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPiecewisePseudoLikelihood
computeObservedIncompatibility() - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication: Compute the incompatibility in the model using the labels (truth values) from the observed (truth) database.
computeRegularizer() - Method in class org.linqs.psl.application.learning.weight.VotedPerceptron
computeScalingFactor() - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior: Computes the amount to scale gradient for each rule.
computeScalingFactor() - Method in class org.linqs.psl.application.learning.weight.em.HardEM
computeScalingFactor() - Method in class org.linqs.psl.application.learning.weight.VotedPerceptron: Computes the amount to scale gradient for each rule.
computeValue(ReadableDatabase, Constant...) - Method in class org.linqs.psl.model.predicate.ExternalFunctionalPredicate
computeValue(ReadableDatabase, Constant...) - Method in class org.linqs.psl.model.predicate.FunctionalPredicate: Computes the truth value of this Predicate with the given arguments.
config - Variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior.WeightConfig
Config - Class in org.linqs.psl.config: The storage for all configuration values used in PSL.
Config() - Constructor for class org.linqs.psl.config.Config
CONFIG_PREFIX - Static variable in class org.linqs.psl.application.inference.InferenceApplication: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.application.inference.LazyMPEInference: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel
CONFIG_PREFIX - Static variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior
CONFIG_PREFIX - Static variable in class org.linqs.psl.application.learning.weight.em.ExpectationMaximization: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.application.learning.weight.em.HardEM: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.application.learning.weight.em.PairedDualLearner: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.application.learning.weight.maxlikelihood.LazyMaxLikelihoodMPE: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPiecewisePseudoLikelihood: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPseudoLikelihood: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.application.learning.weight.search.grid.BaseGridSearch: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.application.learning.weight.search.grid.ContinuousRandomGridSearch: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.application.learning.weight.search.grid.GridSearch: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.application.learning.weight.search.grid.GuidedRandomGridSearch: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.application.learning.weight.search.grid.RandomGridSearch: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.application.learning.weight.search.grid.RankSearch: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.application.learning.weight.search.Hyperband: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.application.learning.weight.search.InitialWeightHyperband: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.application.learning.weight.VotedPerceptron: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.database.atom.LazyAtomManager: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.database.atom.PersistedAtomManager: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver
CONFIG_PREFIX - Static variable in class org.linqs.psl.database.rdbms.QueryRewriter
CONFIG_PREFIX - Static variable in class org.linqs.psl.database.rdbms.RDBMSDatabase
CONFIG_PREFIX - Static variable in class org.linqs.psl.database.rdbms.RDBMSDataStore: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.evaluation.statistics.CategoricalEvaluator: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.evaluation.statistics.ContinuousEvaluator: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.evaluation.statistics.RankingEvaluator: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.grounding.Grounding
CONFIG_PREFIX - Static variable in class org.linqs.psl.reasoner.admm.ADMMReasoner: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.reasoner.admm.term.ADMMTermStore
CONFIG_PREFIX - Static variable in class org.linqs.psl.reasoner.bool.BooleanMaxWalkSat: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.reasoner.bool.BooleanMCSat: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.reasoner.dcd.DCDReasoner: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.reasoner.ExecutableReasoner: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.reasoner.sgd.SGDReasoner: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.reasoner.term.HyperplaneTermGenerator
CONFIG_PREFIX - Static variable in class org.linqs.psl.reasoner.term.MemoryTermStore
CONFIG_PREFIX - Static variable in class org.linqs.psl.reasoner.term.MemoryVariableTermStore: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore: Prefix of property keys used by this class.
CONFIG_PREFIX - Static variable in class org.linqs.psl.util.Parallel
CONFIG_PREFIX - Static variable in class org.linqs.psl.util.RandUtils
CONFIG_PREFIX - Static variable in class org.linqs.psl.util.RuntimeStats
Conjunction - Class in org.linqs.psl.model.formula
Conjunction(Formula...) - Constructor for class org.linqs.psl.model.formula.Conjunction
constant - Variable in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule
constant - Variable in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression
Constant - Class in org.linqs.psl.model.term: An element in the universe over which a PSL program is grounded.
Constant() - Constructor for class org.linqs.psl.model.term.Constant
constant - Variable in class org.linqs.psl.reasoner.admm.term.HyperplaneTerm
constant - Variable in class org.linqs.psl.reasoner.admm.term.SquaredHyperplaneTerm
ConstantNumber - Class in org.linqs.psl.model.rule.arithmetic.expression.coefficient
ConstantNumber(float) - Constructor for class org.linqs.psl.model.rule.arithmetic.expression.coefficient.ConstantNumber
ConstantType - Enum in org.linqs.psl.model.term: A type of Constant.
ConstraintBlockerTerm - Class in org.linqs.psl.reasoner.term.blocker: A Term to hold blocks.
ConstraintBlockerTerm(RandomVariableAtom[], WeightedGroundRule[], boolean) - Constructor for class org.linqs.psl.reasoner.term.blocker.ConstraintBlockerTerm: Takes ownership of all the passed in arrays.
ConstraintBlockerTermGenerator - Class in org.linqs.psl.reasoner.term.blocker: Prepares blocks.
ConstraintBlockerTermGenerator() - Constructor for class org.linqs.psl.reasoner.term.blocker.ConstraintBlockerTermGenerator
ConstraintBlockerTermStore - Class in org.linqs.psl.reasoner.term.blocker: A TermStore to hold blocks.
ConstraintBlockerTermStore() - Constructor for class org.linqs.psl.reasoner.term.blocker.ConstraintBlockerTermStore
ConstraintTerm - Class in org.linqs.psl.reasoner.function: A numeric constraint.
ConstraintTerm(GeneralFunction, FunctionComparator, float) - Constructor for class org.linqs.psl.reasoner.function.ConstraintTerm
containsGroundRule(GroundRule) - Method in interface org.linqs.psl.grounding.GroundRuleStore: Checks whether a GroundRule is in this store.
containsGroundRule(GroundRule) - Method in class org.linqs.psl.grounding.MemoryGroundRuleStore: O(n) check for a ground rule.
ContinuousEvaluator - Class in org.linqs.psl.evaluation.statistics: Compute various continuous statistics using a threshold.
ContinuousEvaluator() - Constructor for class org.linqs.psl.evaluation.statistics.ContinuousEvaluator
ContinuousEvaluator(String) - Constructor for class org.linqs.psl.evaluation.statistics.ContinuousEvaluator
ContinuousEvaluator(ContinuousEvaluator.RepresentativeMetric) - Constructor for class org.linqs.psl.evaluation.statistics.ContinuousEvaluator
ContinuousEvaluator.RepresentativeMetric - Enum in org.linqs.psl.evaluation.statistics
ContinuousRandomGridSearch - Class in org.linqs.psl.application.learning.weight.search.grid: A grid search that just randomly samples from a continuous grid [0, 1).
ContinuousRandomGridSearch(Model, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.ContinuousRandomGridSearch
ContinuousRandomGridSearch(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.ContinuousRandomGridSearch
convertAtomToVariable(RandomVariableAtom) - Method in class org.linqs.psl.reasoner.dcd.term.DCDMemoryTermStore
convertAtomToVariable(RandomVariableAtom) - Method in class org.linqs.psl.reasoner.sgd.term.SGDMemoryTermStore
convertAtomToVariable(RandomVariableAtom) - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore
copy() - Method in class org.linqs.psl.util.FloatMatrix: Get a copy of this matrix.
copy() - Method in class org.linqs.psl.util.Parallel.Worker: Make a deep copy of this worker.
COST_ESTIMATOR_DEFAULT - Static variable in class org.linqs.psl.database.rdbms.QueryRewriter
COST_ESTIMATOR_KEY - Static variable in class org.linqs.psl.database.rdbms.QueryRewriter: Whether we should use histograms or column selectivity to estimate the join size.
count(Rule) - Method in interface org.linqs.psl.grounding.GroundRuleStore
count(Rule) - Method in class org.linqs.psl.grounding.MemoryGroundRuleStore: O(n).
count(int, int, int, Parallel.Worker<Integer>) - Static method in class org.linqs.psl.util.Parallel: Count and call a worker with each number in [start, end).
count(int, int, Parallel.Worker<Integer>) - Static method in class org.linqs.psl.util.Parallel: Convenience count() that increments by 1.
count(int, Parallel.Worker<Integer>) - Static method in class org.linqs.psl.util.Parallel: Convenience count() that starts at 0 and increments by 1.
countActivatableAtoms() - Method in class org.linqs.psl.database.atom.LazyAtomManager: Compute the number of lazy atoms that can be activated at this moment.
countAllGroundAtoms(StandardPredicate) - Method in class org.linqs.psl.database.Database
countAllGroundAtoms(StandardPredicate, List<Integer>) - Method in class org.linqs.psl.database.Database
countAllGroundAtoms(StandardPredicate, List<Integer>) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase
countAllGroundAtoms(StandardPredicate) - Method in interface org.linqs.psl.database.ReadableDatabase: Get a count of all the ground atoms for a predicate.
countAllGroundRandomVariableAtoms(StandardPredicate) - Method in class org.linqs.psl.database.Database
countAllGroundRandomVariableAtoms(StandardPredicate) - Method in interface org.linqs.psl.database.ReadableDatabase: Get a count of all the ground RandomVariableAtoms for a predicate.
createAtomManager(Database) - Method in class org.linqs.psl.application.inference.InferenceApplication
createAtomManager(Database) - Method in class org.linqs.psl.application.inference.LazyMPEInference
createAtomManager() - Method in class org.linqs.psl.application.learning.weight.maxlikelihood.LazyMaxLikelihoodMPE
createAtomManager() - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication: Create an atom manager on top of the RV database.
createCountAllStatement(Connection, List<Integer>) - Method in class org.linqs.psl.database.rdbms.PredicateInfo: Create a prepared statement to count all the ground atoms for this predicate (within the specified partitions).
createDeleteStatement(Connection, int) - Method in class org.linqs.psl.database.rdbms.PredicateInfo: Create a prepared statement that deletes ground atoms that match all the arguments.
createGroundRuleStore() - Method in class org.linqs.psl.application.inference.DCDStreamingInference
createGroundRuleStore() - Method in class org.linqs.psl.application.inference.InferenceApplication
createGroundRuleStore() - Method in class org.linqs.psl.application.inference.SGDStreamingInference
createLinearConstraintTerm(TermStore<ADMMObjectiveTerm, LocalVariable>, GroundRule, Hyperplane<LocalVariable>, FunctionComparator) - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermGenerator
createLinearConstraintTerm(TermStore<DCDObjectiveTerm, RandomVariableAtom>, GroundRule, Hyperplane<RandomVariableAtom>, FunctionComparator) - Method in class org.linqs.psl.reasoner.dcd.term.DCDTermGenerator
createLinearConstraintTerm(TermStore<SGDObjectiveTerm, RandomVariableAtom>, GroundRule, Hyperplane<RandomVariableAtom>, FunctionComparator) - Method in class org.linqs.psl.reasoner.sgd.term.SGDTermGenerator
createLinearConstraintTerm(TermStore<T, V>, GroundRule, Hyperplane<V>, FunctionComparator) - Method in class org.linqs.psl.reasoner.term.HyperplaneTermGenerator: Create a hard constraint term,
createLocalVariable(RandomVariableAtom) - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore: Create a local variable and ensure that a global copy is registered.
createLocalVariable(RandomVariableAtom) - Method in class org.linqs.psl.reasoner.term.blocker.ConstraintBlockerTermStore
createLocalVariable(RandomVariableAtom) - Method in class org.linqs.psl.reasoner.term.MemoryTermStore
createLocalVariable(RandomVariableAtom) - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore
createLocalVariable(RandomVariableAtom) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
createLocalVariable(RandomVariableAtom) - Method in interface org.linqs.psl.reasoner.term.TermStore: Create a variable local to a specific term.
createLossTerm(TermStore<ADMMObjectiveTerm, LocalVariable>, boolean, boolean, GroundRule, Hyperplane<LocalVariable>) - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermGenerator
createLossTerm(TermStore<DCDObjectiveTerm, RandomVariableAtom>, boolean, boolean, GroundRule, Hyperplane<RandomVariableAtom>) - Method in class org.linqs.psl.reasoner.dcd.term.DCDTermGenerator
createLossTerm(TermStore<SGDObjectiveTerm, RandomVariableAtom>, boolean, boolean, GroundRule, Hyperplane<RandomVariableAtom>) - Method in class org.linqs.psl.reasoner.sgd.term.SGDTermGenerator
createLossTerm(TermStore<T, V>, boolean, boolean, GroundRule, Hyperplane<V>) - Method in class org.linqs.psl.reasoner.term.HyperplaneTermGenerator: Create a term from a ground rule and hyperplane.
createPartitionMoveStatement(Connection, int, int) - Method in class org.linqs.psl.database.rdbms.PredicateInfo: Create a prepared statement that changes moves atoms from one partition to another.
createQueryAllStatement(Connection, List<Integer>) - Method in class org.linqs.psl.database.rdbms.PredicateInfo: Create a prepared statement to query all the atoms for this predicate (within the specified partitions).
createQueryAllWriteStatement(Connection, int) - Method in class org.linqs.psl.database.rdbms.PredicateInfo: Create a prepared statement that queries for all random variable atoms (atoms in the write partition) of this predicate.
createQueryStatement(Connection, List<Integer>) - Method in class org.linqs.psl.database.rdbms.PredicateInfo: Create a prepared statement that queries for one specific atom.
createReasoner() - Method in class org.linqs.psl.application.inference.DCDStreamingInference
createReasoner() - Method in class org.linqs.psl.application.inference.InferenceApplication
createReasoner() - Method in class org.linqs.psl.application.inference.SGDStreamingInference
createTerm(GroundRule, TermStore<T, V>) - Method in class org.linqs.psl.reasoner.term.HyperplaneTermGenerator: Create a ReasonerTerm from the ground rule.
createTermGenerator() - Method in class org.linqs.psl.application.inference.DCDStreamingInference
createTermGenerator() - Method in class org.linqs.psl.application.inference.InferenceApplication
createTermGenerator() - Method in class org.linqs.psl.application.inference.SGDStreamingInference
createTermStore() - Method in class org.linqs.psl.application.inference.DCDStreamingInference
createTermStore() - Method in class org.linqs.psl.application.inference.InferenceApplication
createTermStore() - Method in class org.linqs.psl.application.inference.SGDStreamingInference
createUpsertStatement(Connection, DatabaseDriver) - Method in class org.linqs.psl.database.rdbms.PredicateInfo: Create a prepared statement that upserts.
currentLocation - Variable in class org.linqs.psl.application.learning.weight.search.grid.BaseGridSearch: The current location we are investigating.
currentPage - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator
currentRule - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator
CUT_OBJECTIVE_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.VotedPerceptron
CUT_OBJECTIVE_KEY - Static variable in class org.linqs.psl.application.learning.weight.VotedPerceptron: If true, then cut the step size in half whenever the objective increases.
cutObjective - Variable in class org.linqs.psl.application.learning.weight.VotedPerceptron

D

Database - Class in org.linqs.psl.database: A data model for retrieving and persisting GroundAtoms.
Database(DataStore, Partition, Partition[]) - Constructor for class org.linqs.psl.database.Database
DatabaseDriver - Interface in org.linqs.psl.database.rdbms.driver: An interface to a specific RDBMS backend.
DatabaseQuery - Class in org.linqs.psl.database: A query to select groundings from a Database.
DatabaseQuery(Formula) - Constructor for class org.linqs.psl.database.DatabaseQuery
DatabaseQuery(Formula, boolean) - Constructor for class org.linqs.psl.database.DatabaseQuery
DatabaseQuery(Formula, boolean, Set<Variable>) - Constructor for class org.linqs.psl.database.DatabaseQuery
DataStore - Interface in org.linqs.psl.database: Makes GroundAtoms available via Databases.
DataStoreMetadata - Class in org.linqs.psl.database.rdbms
DataStoreMetadata(RDBMSDataStore) - Constructor for class org.linqs.psl.database.rdbms.DataStoreMetadata
db - Variable in class org.linqs.psl.application.inference.InferenceApplication
db - Variable in class org.linqs.psl.database.atom.AtomCache
db - Variable in class org.linqs.psl.database.atom.AtomManager
DCDMemoryTermStore - Class in org.linqs.psl.reasoner.dcd.term: An in-memory TermStore specifically for DCD terms.
DCDMemoryTermStore() - Constructor for class org.linqs.psl.reasoner.dcd.term.DCDMemoryTermStore
DCDObjectiveTerm - Class in org.linqs.psl.reasoner.dcd.term: A term in the objective to be optimized by a DCDReasoner.
DCDObjectiveTerm(VariableTermStore<DCDObjectiveTerm, RandomVariableAtom>, boolean, Hyperplane<RandomVariableAtom>, float, float) - Constructor for class org.linqs.psl.reasoner.dcd.term.DCDObjectiveTerm
DCDReasoner - Class in org.linqs.psl.reasoner.dcd: Uses an SGD optimization method to optimize its GroundRules.
DCDReasoner() - Constructor for class org.linqs.psl.reasoner.dcd.DCDReasoner
DCDStreamingCacheIterator - Class in org.linqs.psl.reasoner.dcd.term
DCDStreamingCacheIterator(DCDStreamingTermStore, boolean, List<DCDObjectiveTerm>, List<DCDObjectiveTerm>, ByteBuffer, ByteBuffer, boolean, int[], boolean, int) - Constructor for class org.linqs.psl.reasoner.dcd.term.DCDStreamingCacheIterator
DCDStreamingInference - Class in org.linqs.psl.application.inference
DCDStreamingInference(Model, Database) - Constructor for class org.linqs.psl.application.inference.DCDStreamingInference
DCDStreamingInitialRoundIterator - Class in org.linqs.psl.reasoner.dcd.term: Iterate over all the terms that come up from grounding.
DCDStreamingInitialRoundIterator(DCDStreamingTermStore, List<WeightedRule>, AtomManager, HyperplaneTermGenerator<DCDObjectiveTerm, RandomVariableAtom>, List<DCDObjectiveTerm>, List<DCDObjectiveTerm>, ByteBuffer, ByteBuffer, int) - Constructor for class org.linqs.psl.reasoner.dcd.term.DCDStreamingInitialRoundIterator
DCDStreamingTermStore - Class in org.linqs.psl.reasoner.dcd.term: A term store that iterates over ground queries directly (obviating the GroundRuleStore).
DCDStreamingTermStore(List<Rule>, AtomManager) - Constructor for class org.linqs.psl.reasoner.dcd.term.DCDStreamingTermStore
DCDTermGenerator - Class in org.linqs.psl.reasoner.dcd.term: A TermGenerator for DCD objective terms.
DCDTermGenerator() - Constructor for class org.linqs.psl.reasoner.dcd.term.DCDTermGenerator
DEFAULT_CATEGORY_INDEXES - Static variable in class org.linqs.psl.evaluation.statistics.CategoricalEvaluator
DEFAULT_DELIMITER - Static variable in class org.linqs.psl.database.loading.Inserter
DEFAULT_EVIDENCE_VALUE - Static variable in class org.linqs.psl.database.rdbms.RDBMSInserter
DEFAULT_HOST - Static variable in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver
DEFAULT_INITIAL_NUMBER - Static variable in class org.linqs.psl.util.HashCode
DEFAULT_MULTIPLIER - Static variable in class org.linqs.psl.util.HashCode
DEFAULT_MULTIROW_COUNT - Static variable in class org.linqs.psl.database.rdbms.RDBMSInserter: The number of records in each multi-row insert.
DEFAULT_PAGE_SIZE - Static variable in class org.linqs.psl.database.rdbms.RDBMSInserter: The number of inserts in each batch.
DEFAULT_PORT - Static variable in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver
DEFAULT_PREDICATE_KEY - Static variable in class org.linqs.psl.evaluation.statistics.CategoricalEvaluator: The default predicate to use when none are supplied.
DEFAULT_REPRESENTATIVE - Static variable in class org.linqs.psl.evaluation.statistics.CategoricalEvaluator
DEFAULT_REPRESENTATIVE - Static variable in class org.linqs.psl.evaluation.statistics.ContinuousEvaluator
DEFAULT_REPRESENTATIVE - Static variable in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator
DEFAULT_REPRESENTATIVE - Static variable in class org.linqs.psl.evaluation.statistics.RankingEvaluator
DEFAULT_SIZE_DEFAULT - Static variable in class org.linqs.psl.reasoner.term.MemoryVariableTermStore
DEFAULT_SIZE_KEY - Static variable in class org.linqs.psl.reasoner.term.MemoryVariableTermStore: The default size in terms of number of variables.
DEFAULT_STATS_PERCENTAGE - Static variable in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver
DEFAULT_THRESHOLD - Static variable in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator
DEFAULT_THRESHOLD - Static variable in class org.linqs.psl.evaluation.statistics.RankingEvaluator
deleteAtom(GroundAtom) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase
deleteAtom(GroundAtom) - Method in interface org.linqs.psl.database.WritableDatabase: Removes the GroundAtom from the Database, if it exists.
deletePartition(Partition) - Method in interface org.linqs.psl.database.DataStore: Deletes all GroundAtoms persisted in a Partition.
deletePartition(Partition) - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore
DELIM - Static variable in class org.linqs.psl.application.learning.weight.search.grid.GridSearch: The delimiter to separate rule weights (and lication ids).
DELIM - Static variable in class org.linqs.psl.application.learning.weight.search.grid.RankSearch: The delimiter to separate rule weights (and lication ids).
DELIM - Static variable in class org.linqs.psl.evaluation.statistics.CategoricalEvaluator
DiscreteEvaluator - Class in org.linqs.psl.evaluation.statistics: Compute various discrete statistics using a threshold.
DiscreteEvaluator() - Constructor for class org.linqs.psl.evaluation.statistics.DiscreteEvaluator
DiscreteEvaluator(double) - Constructor for class org.linqs.psl.evaluation.statistics.DiscreteEvaluator
DiscreteEvaluator(double, String) - Constructor for class org.linqs.psl.evaluation.statistics.DiscreteEvaluator
DiscreteEvaluator(double, DiscreteEvaluator.RepresentativeMetric) - Constructor for class org.linqs.psl.evaluation.statistics.DiscreteEvaluator
DiscreteEvaluator.RepresentativeMetric - Enum in org.linqs.psl.evaluation.statistics
Disjunction - Class in org.linqs.psl.model.formula
Disjunction(Formula...) - Constructor for class org.linqs.psl.model.formula.Disjunction
dissatisfaction - Variable in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule
div(float) - Method in class org.linqs.psl.util.FloatMatrix: Scalar division (not in-place).
div(float, boolean) - Method in class org.linqs.psl.util.FloatMatrix: Scalar division.
Divide - Class in org.linqs.psl.model.rule.arithmetic.expression.coefficient: A coefficient to represent division.
Divide(Coefficient, Coefficient) - Constructor for class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Divide
DNFClause(List<Atom>, List<Atom>) - Constructor for class org.linqs.psl.model.formula.FormulaAnalysis.DNFClause
doLearn() - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior
doLearn() - Method in class org.linqs.psl.application.learning.weight.em.ExpectationMaximization
doLearn() - Method in class org.linqs.psl.application.learning.weight.em.PairedDualLearner
doLearn() - Method in class org.linqs.psl.application.learning.weight.search.grid.BaseGridSearch
doLearn() - Method in class org.linqs.psl.application.learning.weight.search.Hyperband
doLearn() - Method in class org.linqs.psl.application.learning.weight.VotedPerceptron
doLearn() - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication: Do the actual learning procedure.
dot(FloatMatrix) - Method in class org.linqs.psl.util.FloatMatrix: Dot product.
DoubleAttribute - Class in org.linqs.psl.model.term: An Attribute that encapsulates a Double.
DoubleAttribute(Double) - Constructor for class org.linqs.psl.model.term.DoubleAttribute: Constructs a Double attribute from a Double
dropColumnDefault(String, String) - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver: Remove the default value for a column.

E

EARLY_STOPPING_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior
EARLY_STOPPING_KEY - Static variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior
elementAdd(FloatMatrix) - Method in class org.linqs.psl.util.FloatMatrix: Element-wise addition (not in-place).
elementAdd(FloatMatrix, boolean) - Method in class org.linqs.psl.util.FloatMatrix: Element-wise addition.
elementDiv(FloatMatrix) - Method in class org.linqs.psl.util.FloatMatrix: Element-wise division (not in-place).
elementDiv(FloatMatrix, boolean) - Method in class org.linqs.psl.util.FloatMatrix: Element-wise division.
elementLog() - Method in class org.linqs.psl.util.FloatMatrix: Element-wise natural log (not in-place).
elementLog(boolean) - Method in class org.linqs.psl.util.FloatMatrix: Element-wise natural log.
elementMul(FloatMatrix) - Method in class org.linqs.psl.util.FloatMatrix: Element-wise multiplication (not in-place).
elementMul(FloatMatrix, boolean) - Method in class org.linqs.psl.util.FloatMatrix: Element-wise multiplication.
elementSub(FloatMatrix) - Method in class org.linqs.psl.util.FloatMatrix: Element-wise difference (not in-place).
elementSub(FloatMatrix, boolean) - Method in class org.linqs.psl.util.FloatMatrix: Element-wise difference.
emIteration - Variable in class org.linqs.psl.application.learning.weight.em.ExpectationMaximization
enableAccessExceptions - Variable in class org.linqs.psl.database.atom.AtomManager: If the specific AtomManager supports access exceptions, then this will control if they are actually thrown.
enableAccessExceptions(boolean) - Method in class org.linqs.psl.database.atom.AtomManager: Set whether or not to throw access exceptions.
ensureCapacity(int) - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore
ensureCapacity(int) - Method in class org.linqs.psl.reasoner.term.blocker.ConstraintBlockerTermStore
ensureCapacity(int) - Method in class org.linqs.psl.reasoner.term.MemoryTermStore
ensureCapacity(int) - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore
ensureCapacity(int) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
ensureCapacity(int) - Method in interface org.linqs.psl.reasoner.term.TermStore: Ensure that the underlying stuctures can have the required term capacity.
ensureVariableCapacity(int) - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore: Make sure we allocate the right amount of memory for global variables.
ensureVariableCapacity(int) - Method in class org.linqs.psl.reasoner.term.blocker.ConstraintBlockerTermStore
ensureVariableCapacity(int) - Method in class org.linqs.psl.reasoner.term.MemoryTermStore
ensureVariableCapacity(int) - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore: Make sure we allocate the right amount of memory for global variables.
ensureVariableCapacity(int) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
ensureVariableCapacity(int) - Method in interface org.linqs.psl.reasoner.term.TermStore: Ensure that the underlying stuctures can have the required variable capacity.
EPSILON - Static variable in class org.linqs.psl.util.MathUtils
EPSILON_ABS_DEFAULT - Static variable in class org.linqs.psl.reasoner.admm.ADMMReasoner
EPSILON_ABS_KEY - Static variable in class org.linqs.psl.reasoner.admm.ADMMReasoner: Absolute error component of stopping criteria.
EPSILON_FLOAT - Static variable in class org.linqs.psl.util.MathUtils
EPSILON_REL_DEFAULT - Static variable in class org.linqs.psl.reasoner.admm.ADMMReasoner
EPSILON_REL_KEY - Static variable in class org.linqs.psl.reasoner.admm.ADMMReasoner: Relative error component of stopping criteria.
Equal - Static variable in class org.linqs.psl.model.predicate.GroundingOnlyPredicate: True if arguments are equal.
equals(Object) - Method in class org.linqs.psl.database.Partition
equals(Object) - Method in class org.linqs.psl.model.atom.Atom
equals(Object) - Method in class org.linqs.psl.model.formula.AbstractBranchFormula
equals(Object) - Method in class org.linqs.psl.model.formula.Implication
equals(Object) - Method in class org.linqs.psl.model.formula.Negation
equals(Object) - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule
equals(Object) - Method in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression
equals(Object) - Method in class org.linqs.psl.model.rule.arithmetic.expression.SummationAtom
equals(Object) - Method in class org.linqs.psl.model.rule.arithmetic.expression.SummationVariable
equals(Object) - Method in class org.linqs.psl.model.rule.arithmetic.UnweightedArithmeticRule
equals(Object) - Method in class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule
equals(Object) - Method in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule
equals(Object) - Method in class org.linqs.psl.model.rule.logical.AbstractLogicalRule
equals(Object) - Method in class org.linqs.psl.model.rule.logical.UnweightedLogicalRule
equals(Object) - Method in class org.linqs.psl.model.rule.logical.WeightedLogicalRule
equals(Object) - Method in class org.linqs.psl.model.term.DoubleAttribute: A DoubleAttribute is equal to another Object if that Object is a DoubleAttribute and their values are equal.
equals(Object) - Method in class org.linqs.psl.model.term.IntegerAttribute: An IntegerAttribute is equal to another Object if that Object is an IntegerAttribute and their values are equal.
equals(Object) - Method in class org.linqs.psl.model.term.LongAttribute: A LongAttribute is equal to another Object if that Object is a LongAttribute and their values are equal.
equals(Object) - Method in class org.linqs.psl.model.term.StringAttribute: A StringAttribute is equal to another Object if that Object is a TextAttribute and their values are equal.
equals(Object) - Method in interface org.linqs.psl.model.term.Term
equals(Object) - Method in class org.linqs.psl.model.term.UniqueIntID
equals(Object) - Method in class org.linqs.psl.model.term.UniqueStringID
equals(Object) - Method in class org.linqs.psl.model.term.Variable
equals(Object) - Method in class org.linqs.psl.reasoner.admm.term.LocalVariable
equals(Object) - Method in class org.linqs.psl.util.FloatMatrix
equals(double, double) - Static method in class org.linqs.psl.util.MathUtils
equals(double, double, double) - Static method in class org.linqs.psl.util.MathUtils
equals(float, float) - Static method in class org.linqs.psl.util.MathUtils
equals(float, float, float) - Static method in class org.linqs.psl.util.MathUtils
equalsRelaxed(double, double) - Static method in class org.linqs.psl.util.MathUtils
equalsRelaxed(float, float) - Static method in class org.linqs.psl.util.MathUtils
equalsStrict(double, double) - Static method in class org.linqs.psl.util.MathUtils
equalsStrict(float, float) - Static method in class org.linqs.psl.util.MathUtils
eStep() - Method in class org.linqs.psl.application.learning.weight.em.ExpectationMaximization: The Expectation step in the EM algorithm.
evaluate() - Method in class org.linqs.psl.reasoner.admm.term.ADMMObjectiveTerm: Evaluate this potential using the local variables.
evaluate(float[]) - Method in class org.linqs.psl.reasoner.admm.term.ADMMObjectiveTerm: Evaluate this potential using the given consensus values.
evaluate() - Method in class org.linqs.psl.reasoner.admm.term.HingeLossTerm: weight * max(0.0, coefficients^T * x - constant)
evaluate(float[]) - Method in class org.linqs.psl.reasoner.admm.term.HingeLossTerm
evaluate() - Method in class org.linqs.psl.reasoner.admm.term.HyperplaneTerm: coefficients^T * x - constant
evaluate(float[]) - Method in class org.linqs.psl.reasoner.admm.term.HyperplaneTerm
evaluate() - Method in class org.linqs.psl.reasoner.admm.term.LinearConstraintTerm
evaluate(float[]) - Method in class org.linqs.psl.reasoner.admm.term.LinearConstraintTerm
evaluate() - Method in class org.linqs.psl.reasoner.admm.term.LinearLossTerm: weight * coefficients^T * x
evaluate(float[]) - Method in class org.linqs.psl.reasoner.admm.term.LinearLossTerm
evaluate() - Method in class org.linqs.psl.reasoner.admm.term.SquaredHingeLossTerm: weight * [max(coefficients^T * x - constant, 0.0)]^2
evaluate(float[]) - Method in class org.linqs.psl.reasoner.admm.term.SquaredHingeLossTerm
evaluate() - Method in class org.linqs.psl.reasoner.admm.term.SquaredHyperplaneTerm: coefficients^T * x - constant
evaluate(float[]) - Method in class org.linqs.psl.reasoner.admm.term.SquaredHyperplaneTerm
evaluate() - Method in class org.linqs.psl.reasoner.admm.term.SquaredLinearLossTerm: weight * (coeffs^T * x - constant)^2
evaluate(float[]) - Method in class org.linqs.psl.reasoner.admm.term.SquaredLinearLossTerm
evaluate(float[]) - Method in class org.linqs.psl.reasoner.dcd.term.DCDObjectiveTerm
evaluate(float[]) - Method in class org.linqs.psl.reasoner.sgd.term.SGDObjectiveTerm
evaluator - Variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication
Evaluator - Class in org.linqs.psl.evaluation.statistics: Compute some metric (or set of matrics) for some predicted and labeled data.
Evaluator() - Constructor for class org.linqs.psl.evaluation.statistics.Evaluator
EVALUATOR_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication
EVALUATOR_KEY - Static variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication: An evalautor capable of producing a score for the current weight configuration.
EXECUTABLE_PATH_KEY - Static variable in class org.linqs.psl.reasoner.ExecutableReasoner: Key for int property for the path of the executable.
executableInputPath - Variable in class org.linqs.psl.reasoner.ExecutableReasoner: The file that PSL will write for the reasoner.
executableOutputPath - Variable in class org.linqs.psl.reasoner.ExecutableReasoner: The file that the reasoner will write before temination.
executablePath - Variable in class org.linqs.psl.reasoner.ExecutableReasoner: The path the to executable to call.
ExecutableReasoner - Class in org.linqs.psl.reasoner: An abstract superclass for reasoners implemented as command-line executables.
ExecutableReasoner() - Constructor for class org.linqs.psl.reasoner.ExecutableReasoner
ExecutableReasoner(String, String, String, String...) - Constructor for class org.linqs.psl.reasoner.ExecutableReasoner
executeGroundingQuery(Formula) - Method in class org.linqs.psl.database.atom.AtomManager: Calls ReadableDatabase.executeGroundingQuery(Formula) on the encapsulated Database.
executeGroundingQuery(Formula) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase
executeGroundingQuery(Formula) - Method in interface org.linqs.psl.database.ReadableDatabase: Like executeQuery(), but specifically for grounding queries.
executeQuery(DatabaseQuery) - Method in class org.linqs.psl.database.atom.AtomManager: Calls ReadableDatabase.executeQuery(DatabaseQuery) on the encapsulated Database.
executeQuery(DatabaseQuery) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase
executeQuery(RawQuery) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase
executeQuery(Map<Variable, Integer>, VariableTypeMap, String) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase: A more general form for executeQuery().
executeQuery(DatabaseQuery) - Method in interface org.linqs.psl.database.ReadableDatabase: Returns all groundings of a Formula that match a DatabaseQuery.
executeQueryIterator(RawQuery) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase
executeQueryIterator(Map<Variable, Integer>, VariableTypeMap, String) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase: Note that the constants are in the order specified by the projection map.
executeQueryIterator(String, Map<Variable, Integer>, int[], ConstantType[]) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase
ExpectationMaximization - Class in org.linqs.psl.application.learning.weight.em: Abstract superclass for implementations of the expectation-maximization algorithm for learning with latent variables.
ExpectationMaximization(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.em.ExpectationMaximization
expectedIncompatibility - Variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication
EXPLORATION_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior
EXPLORATION_KEY - Static variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior
EXPLORE_LOCATIONS_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.search.grid.GuidedRandomGridSearch
EXPLORE_LOCATIONS_KEY - Static variable in class org.linqs.psl.application.learning.weight.search.grid.GuidedRandomGridSearch: The number of initial seed locations to explore based off of whichever ones score the best.
expression - Variable in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule
ExternalFunction - Interface in org.linqs.psl.model.function
ExternalFunctionalPredicate - Class in org.linqs.psl.model.predicate: A FunctionalPredicate which uses an ExternalFunction to compute truth values.
eye(int) - Static method in class org.linqs.psl.util.FloatMatrix: Make an identity matrix.

F

f1() - Method in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator
factorial(BigInteger) - Static method in class org.linqs.psl.util.MathUtils
FETCH_SIZE_DEFAULT - Static variable in class org.linqs.psl.database.rdbms.RDBMSDatabase
FETCH_SIZE_KEY - Static variable in class org.linqs.psl.database.rdbms.RDBMSDatabase
filter(Iterable<T>, IteratorUtils.FilterFunction<T>) - Static method in class org.linqs.psl.util.IteratorUtils: Given an Iterable, return a new Iterable that filters baseed off of some function.
filterClass(Iterable<T>, Class<S>) - Static method in class org.linqs.psl.util.IteratorUtils: Given an Iterable, return a new Iterable that only returns values that are an instance of the provided class.
filters - Variable in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule
finalizeCreateTable(CreateTableQuery) - Method in interface org.linqs.psl.database.rdbms.driver.DatabaseDriver: Gives the driver a chance to perform any final manipulations to the CREATE TABLE statement.
finalizeCreateTable(CreateTableQuery) - Method in class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver
finalizeCreateTable(CreateTableQuery) - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver
fixedByteSize() - Method in class org.linqs.psl.reasoner.dcd.term.DCDObjectiveTerm: The number of bytes that writeFixedValues() will need to represent this term.
fixedByteSize() - Method in class org.linqs.psl.reasoner.sgd.term.SGDObjectiveTerm: The number of bytes that writeFixedValues() will need to represent this term.
flatten() - Method in class org.linqs.psl.model.atom.Atom
flatten() - Method in class org.linqs.psl.model.formula.AbstractBranchFormula
flatten() - Method in interface org.linqs.psl.model.formula.Formula: Collapses nested formulas of the same type and remove duplicates at the top level.
flatten() - Method in class org.linqs.psl.model.formula.Implication
flatten() - Method in class org.linqs.psl.model.formula.Negation
FloatMatrix - Class in org.linqs.psl.util: A dense float matrix representation and utilities.
FloatMatrix() - Constructor for class org.linqs.psl.util.FloatMatrix: Make an empty matrix.
FloatMatrix(float[], int, int) - Constructor for class org.linqs.psl.util.FloatMatrix: Make a matrix by assuming the given data.
FloatMatrix(float[], int, int, boolean) - Constructor for class org.linqs.psl.util.FloatMatrix: Make a matrix using existing data.
FloatMatrix(float[][]) - Constructor for class org.linqs.psl.util.FloatMatrix: Make a matrix by assuming the given data.
foreach(Iterable<T>, Parallel.Worker<T>) - Static method in class org.linqs.psl.util.Parallel: Invoke a worker once for each item.
foreach(Iterator<T>, Parallel.Worker<T>) - Static method in class org.linqs.psl.util.Parallel
Formula - Interface in org.linqs.psl.model.formula: A logical formula composed of Atoms and logical operators.
formula - Variable in class org.linqs.psl.model.rule.logical.AbstractLogicalRule
Formula2SQL - Class in org.linqs.psl.database.rdbms
Formula2SQL(Set<Variable>, RDBMSDatabase) - Constructor for class org.linqs.psl.database.rdbms.Formula2SQL: Convert a formula to a query that will fetch all possible combinations of constants used in that formual (aka grounding).
Formula2SQL(Set<Variable>, RDBMSDatabase, boolean) - Constructor for class org.linqs.psl.database.rdbms.Formula2SQL: See above description.
Formula2SQL(Set<Variable>, RDBMSDatabase, boolean, Atom) - Constructor for class org.linqs.psl.database.rdbms.Formula2SQL: See above description.
FormulaAnalysis - Class in org.linqs.psl.model.formula: Converts a Formula to a simplified Disjunctive Normal Form view and makes the clauses available.
FormulaAnalysis(Formula) - Constructor for class org.linqs.psl.model.formula.FormulaAnalysis
FormulaAnalysis.DNFClause - Class in org.linqs.psl.model.formula
formulas - Variable in class org.linqs.psl.model.formula.AbstractBranchFormula
fScore(double) - Method in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator
FunctionalPredicate - Class in org.linqs.psl.model.predicate: A Predicate with truth values defined by some function.
FunctionalPredicate(String, ConstantType[]) - Constructor for class org.linqs.psl.model.predicate.FunctionalPredicate
FunctionalPredicate(String, ConstantType[], boolean) - Constructor for class org.linqs.psl.model.predicate.FunctionalPredicate
FunctionComparator - Enum in org.linqs.psl.reasoner.function: Enumerates possible equality and inequality relationships among numeric functions and values.
FunctionTerm - Interface in org.linqs.psl.reasoner.function: A numeric function.

G

GaussianProcessKernel - Class in org.linqs.psl.application.learning.weight.bayesian: All kernel methods MUST be threadsafe.
GaussianProcessKernel() - Constructor for class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel
GaussianProcessKernel(float[]) - Constructor for class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel: Weights are the number of groundings for a rule divided by total number of groundings.
GaussianProcessKernel.KernelType - Enum in org.linqs.psl.application.learning.weight.bayesian
GaussianProcessKernel.Space - Enum in org.linqs.psl.application.learning.weight.bayesian
GaussianProcessPrior - Class in org.linqs.psl.application.learning.weight.bayesian
GaussianProcessPrior(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior
GaussianProcessPrior(Model, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior
GaussianProcessPrior.ValueAndStd - Class in org.linqs.psl.application.learning.weight.bayesian
GaussianProcessPrior.WeightConfig - Class in org.linqs.psl.application.learning.weight.bayesian
GeneralFunction - Class in org.linqs.psl.reasoner.function: A general function that can handle various cases.
GeneralFunction(boolean, boolean, int) - Constructor for class org.linqs.psl.reasoner.function.GeneralFunction
generateTerms(GroundRuleStore, TermStore<ConstraintBlockerTerm, RandomVariableAtom>) - Method in class org.linqs.psl.reasoner.term.blocker.ConstraintBlockerTermGenerator
generateTerms(GroundRuleStore, TermStore<T, V>) - Method in class org.linqs.psl.reasoner.term.HyperplaneTermGenerator
generateTerms(GroundRuleStore, TermStore<T, V>) - Method in interface org.linqs.psl.reasoner.term.TermGenerator: Use the ground rules in |ruleStore| to generate optimization terms and populate |termStore|.
get(int, Variable) - Method in class org.linqs.psl.database.rdbms.RDBMSResultList
get(int) - Method in class org.linqs.psl.database.rdbms.RDBMSResultList
get(int, Variable) - Method in interface org.linqs.psl.database.ResultList: Returns a substitution for a single Variable
get(int) - Method in interface org.linqs.psl.database.ResultList: Returns a substitution for all Variables.
get(int) - Method in class org.linqs.psl.model.formula.AbstractBranchFormula
get(String) - Static method in class org.linqs.psl.model.predicate.ExternalFunctionalPredicate
get(String, ExternalFunction) - Static method in class org.linqs.psl.model.predicate.ExternalFunctionalPredicate: Get a predicate if one already exists, otherwise create a new one.
get(String) - Static method in class org.linqs.psl.model.predicate.Predicate
get(String) - Static method in class org.linqs.psl.model.predicate.StandardPredicate: The an existing standard predicate (or null if none with this name exists).
get(String, ConstantType...) - Static method in class org.linqs.psl.model.predicate.StandardPredicate: Get a predicate if one already exists, othereise create a new one.
get(int) - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore
get(int) - Method in class org.linqs.psl.reasoner.term.blocker.ConstraintBlockerTermStore
get(int) - Method in class org.linqs.psl.reasoner.term.MemoryTermStore
get(int) - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore
get(int) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
get(int) - Method in interface org.linqs.psl.reasoner.term.TermStore
get(int, int) - Method in class org.linqs.psl.util.FloatMatrix
get() - Static method in class org.linqs.psl.util.Version
getAccessException() - Method in class org.linqs.psl.model.atom.RandomVariableAtom
getAllCachedAtoms() - Method in class org.linqs.psl.database.Database
getAllCachedAtoms() - Method in interface org.linqs.psl.database.ReadableDatabase: Fetch all the GroundAtoms in this database's cache.
getAllCachedRandomVariableAtoms() - Method in class org.linqs.psl.database.Database
getAllCachedRandomVariableAtoms() - Method in interface org.linqs.psl.database.ReadableDatabase: Fetch all the RandomVariableAtoms in this database's cache.
getAllGroundAtoms(StandardPredicate) - Method in class org.linqs.psl.database.Database
getAllGroundAtoms(StandardPredicate, List<Integer>) - Method in class org.linqs.psl.database.Database
getAllGroundAtoms(StandardPredicate, List<Integer>) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase
getAllGroundAtoms(StandardPredicate) - Method in interface org.linqs.psl.database.ReadableDatabase: Fetch all the ground atoms for a predicate.
getAllGroundObservedAtoms(StandardPredicate) - Method in class org.linqs.psl.database.Database
getAllGroundObservedAtoms(StandardPredicate) - Method in interface org.linqs.psl.database.ReadableDatabase: Fetch all the ground ObservedAtoms for a predicate.
getAllGroundRandomVariableAtoms(StandardPredicate) - Method in class org.linqs.psl.database.Database
getAllGroundRandomVariableAtoms(StandardPredicate) - Method in interface org.linqs.psl.database.ReadableDatabase: Fetch all the ground RandomVariableAtoms for a predicate.
getAllPartitions() - Method in class org.linqs.psl.database.rdbms.DataStoreMetadata
getAllStats() - Method in class org.linqs.psl.evaluation.statistics.CategoricalEvaluator
getAllStats() - Method in class org.linqs.psl.evaluation.statistics.ContinuousEvaluator
getAllStats() - Method in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator
getAllStats() - Method in class org.linqs.psl.evaluation.statistics.Evaluator: Get a string that contains the full range of stats that this Evaluator can provide.
getAllStats() - Method in class org.linqs.psl.evaluation.statistics.RankingEvaluator
getAllValuesByType(String, String) - Method in class org.linqs.psl.database.rdbms.DataStoreMetadata
getArguments() - Method in class org.linqs.psl.model.atom.Atom: Returns the arguments associated with this atom.
getArguments() - Method in class org.linqs.psl.model.atom.GroundAtom
getArguments() - Method in class org.linqs.psl.model.rule.arithmetic.expression.SummationAtom: Returns the arguments associated with this SummationAtom.
getArgumentType(int) - Method in class org.linqs.psl.model.predicate.Predicate: Returns the ArgumentType which a Term must have to be a valid argument for a particular argument position of this Predicate.
getArgumentTypes() - Method in interface org.linqs.psl.model.function.ExternalFunction
getArity() - Method in class org.linqs.psl.database.rdbms.RDBMSResultList
getArity() - Method in interface org.linqs.psl.database.ResultList
getArity() - Method in class org.linqs.psl.model.atom.Atom: Returns the number of arguments to the associated predicate.
getArity() - Method in interface org.linqs.psl.model.function.ExternalFunction
getArity() - Method in class org.linqs.psl.model.predicate.Predicate: Returns the number of Terms that are related when using this Predicate.
getArity() - Method in class org.linqs.psl.model.rule.arithmetic.expression.SummationAtom: Returns the number of arguments to the associated Predicate.
getArity() - Method in interface org.linqs.psl.model.rule.arithmetic.expression.SummationAtomOrAtom
getAtom(Predicate, Constant...) - Method in class org.linqs.psl.database.atom.AtomManager: Returns the GroundAtom for the given Predicate and GroundTerms.
getAtom(Predicate, Constant...) - Method in class org.linqs.psl.database.atom.LazyAtomManager
getAtom(Predicate, Constant...) - Method in class org.linqs.psl.database.atom.PersistedAtomManager
getAtom(Predicate, Constant...) - Method in class org.linqs.psl.database.atom.SimpleAtomManager
getAtom(StandardPredicate, boolean, Constant...) - Method in class org.linqs.psl.database.Database
getAtom(Predicate, Constant...) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase
getAtom(StandardPredicate, boolean, Constant...) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase
getAtom(Predicate, Constant...) - Method in interface org.linqs.psl.database.ReadableDatabase: Returns the GroundAtom for the given Predicate and GroundTerms.
getAtom() - Method in class org.linqs.psl.model.rule.misc.GroundValueConstraint
getAtomCoefficients() - Method in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression
getAtomManager() - Method in class org.linqs.psl.application.inference.InferenceApplication
getAtoms(Set<Atom>) - Method in class org.linqs.psl.model.atom.Atom
getAtoms(Set<Atom>) - Method in class org.linqs.psl.model.formula.AbstractBranchFormula
getAtoms(Set<Atom>) - Method in interface org.linqs.psl.model.formula.Formula
getAtoms(Set<Atom>) - Method in class org.linqs.psl.model.formula.Implication
getAtoms(Set<Atom>) - Method in class org.linqs.psl.model.formula.Negation
getAtoms() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule
getAtoms() - Method in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression
getAtoms() - Method in interface org.linqs.psl.model.rule.GroundRule
getAtoms() - Method in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule
getAtoms() - Method in class org.linqs.psl.model.rule.misc.GroundLinearConstraint
getAtoms() - Method in class org.linqs.psl.model.rule.misc.GroundValueConstraint
getAtoms() - Method in class org.linqs.psl.reasoner.term.blocker.ConstraintBlockerTerm
getAtomValues(float[]) - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore: Get the values from the atoms corresponding to global (consensus) variables and put them in the output array.
getAugmentedLagrangianPenalty() - Method in class org.linqs.psl.reasoner.admm.ADMMReasoner
getBigDecimal(String, BigDecimal) - Static method in class org.linqs.psl.config.Config
getBigInteger(String, BigInteger) - Static method in class org.linqs.psl.config.Config
getBlockIndex(RandomVariableAtom) - Method in class org.linqs.psl.reasoner.term.blocker.ConstraintBlockerTermStore: Get the index of the block (term) associated with the given atom.
getBody() - Method in class org.linqs.psl.model.formula.Implication
getBodyPredicates() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule: Get all the predicates used in the body of this rule (no filters).
getBoolean(String, boolean) - Static method in class org.linqs.psl.config.Config
getBoolean(String, Boolean) - Static method in class org.linqs.psl.config.Config
getByte(String, byte) - Static method in class org.linqs.psl.config.Config
getByte(String, Byte) - Static method in class org.linqs.psl.config.Config
getCachedAtom(QueryAtom) - Method in class org.linqs.psl.database.atom.AtomCache: Checks whether a GroundAtom matching a QueryAtom exists in the cache and returns it if so.
getCachedAtoms() - Method in class org.linqs.psl.database.atom.AtomCache
getCachedAtoms(Predicate) - Method in class org.linqs.psl.database.atom.AtomCache: Returns all GroundAtoms in this AtomCache with a given Predicate.
getCachedObservedAtoms() - Method in class org.linqs.psl.database.atom.AtomCache
getCachedRandomVariableAtoms() - Method in class org.linqs.psl.database.atom.AtomCache
getCachedRVACount() - Method in class org.linqs.psl.database.atom.AtomManager: Get the number of RandomVariableAtoms cached by the database.
getCachedRVACount() - Method in class org.linqs.psl.database.Database
getCachedRVACount() - Method in interface org.linqs.psl.database.ReadableDatabase: Get the number of RandomVariableAtoms in the database's cache.
getCacheIterator() - Method in class org.linqs.psl.reasoner.dcd.term.DCDStreamingTermStore
getCacheIterator() - Method in class org.linqs.psl.reasoner.sgd.term.SGDStreamingTermStore
getCacheIterator() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore: Get an iterator that will read and write from disk.
getCardinality(String) - Method in class org.linqs.psl.database.rdbms.TableStats: Get the cardinality (number of unique rows) of a specific column.
getCoefficient(int) - Method in class org.linqs.psl.reasoner.function.GeneralFunction
getCoefficient(int) - Method in class org.linqs.psl.reasoner.term.Hyperplane
getCoefficients() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule
getCoefficients() - Method in class org.linqs.psl.reasoner.term.Hyperplane
getComparator() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule
getComparator() - Method in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression
getComparator() - Method in class org.linqs.psl.reasoner.function.ConstraintTerm
getCompatibilityRules() - Method in interface org.linqs.psl.grounding.GroundRuleStore
getCompatibilityRules() - Method in class org.linqs.psl.grounding.MemoryGroundRuleStore
getConfigs() - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior
getConnection() - Method in interface org.linqs.psl.database.rdbms.driver.DatabaseDriver: Returns a connection to the database.
getConnection() - Method in class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver
getConnection() - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver
getConnection() - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore
getConstant() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule
getConstant(String, ConstantType) - Static method in enum org.linqs.psl.model.term.ConstantType: Convert a general string into the appropriate Constant.
getConstant() - Method in class org.linqs.psl.reasoner.function.GeneralFunction
getConstant() - Method in class org.linqs.psl.reasoner.term.Hyperplane
getConstraintDefinition() - Method in class org.linqs.psl.model.rule.arithmetic.UnweightedGroundArithmeticRule
getConstraintDefinition() - Method in class org.linqs.psl.model.rule.logical.UnweightedGroundLogicalRule
getConstraintDefinition() - Method in class org.linqs.psl.model.rule.misc.GroundLinearConstraint
getConstraintDefinition() - Method in class org.linqs.psl.model.rule.misc.GroundValueConstraint
getConstraintDefinition() - Method in interface org.linqs.psl.model.rule.UnweightedGroundRule
getConstraintRules() - Method in interface org.linqs.psl.grounding.GroundRuleStore
getConstraintRules() - Method in class org.linqs.psl.grounding.MemoryGroundRuleStore
getCount(Connection) - Method in class org.linqs.psl.database.rdbms.PredicateInfo: Get a count of all the rows in the table.
getCount() - Method in class org.linqs.psl.database.rdbms.TableStats
getDatabase() - Method in class org.linqs.psl.database.atom.AtomManager
getDatabase(Partition, Partition...) - Method in interface org.linqs.psl.database.DataStore: Creates a Database that can read from and write to a Partition and optionally read from additional Partitions.
getDatabase(Partition, StandardPredicate[], Partition...) - Method in interface org.linqs.psl.database.DataStore
getDatabase(Partition, Set<StandardPredicate>, Partition...) - Method in interface org.linqs.psl.database.DataStore: Creates a Database that can read from and write to a Partition and optionally read from additional Partitions.
getDatabase(Partition, Partition...) - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore
getDatabase(Partition, StandardPredicate[], Partition...) - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore
getDatabase(Partition, Set<StandardPredicate>, Partition...) - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore
getDataStore() - Method in class org.linqs.psl.database.Database
getDistinct() - Method in class org.linqs.psl.database.DatabaseQuery
getDNF() - Method in class org.linqs.psl.model.atom.Atom
getDNF() - Method in class org.linqs.psl.model.formula.Conjunction
getDNF() - Method in class org.linqs.psl.model.formula.Disjunction
getDNF() - Method in interface org.linqs.psl.model.formula.Formula
getDNF() - Method in class org.linqs.psl.model.formula.Implication
getDNF() - Method in class org.linqs.psl.model.formula.Negation
getDNFClause(int) - Method in class org.linqs.psl.model.formula.FormulaAnalysis: Returns the specified clause of the Formula after it has been converted to Disjunctive Normal Form.
getDouble(String, Double) - Static method in class org.linqs.psl.config.Config
getDouble(String, double) - Static method in class org.linqs.psl.config.Config
getDoubleTypeName() - Method in interface org.linqs.psl.database.rdbms.driver.DatabaseDriver: Get the type name for a double type.
getDoubleTypeName() - Method in class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver
getDoubleTypeName() - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver
getDriver() - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore
getDualIncompatibility(GroundRule, ADMMTermStore, float[]) - Method in class org.linqs.psl.reasoner.admm.ADMMReasoner: Computes the incompatibility of the local variable copies corresponding to GroundRule groundRule.
getEpsilonAbs() - Method in class org.linqs.psl.reasoner.admm.ADMMReasoner
getEpsilonRel() - Method in class org.linqs.psl.reasoner.admm.ADMMReasoner
getExactlyOne() - Method in class org.linqs.psl.reasoner.term.blocker.ConstraintBlockerTerm
getException() - Method in class org.linqs.psl.util.Parallel.Worker
getExpectedTotalWeightedCompatibility(Iterable<WeightedGroundRule>) - Static method in class org.linqs.psl.grounding.GroundRules: Computes the expected weighted compatibility (1 - incompatibility) of a collection of WeightedGroundRules.
getExpectedTotalWeightedIncompatibility(Iterable<WeightedGroundRule>) - Static method in class org.linqs.psl.grounding.GroundRules: Computes the expected total weighted incompatibility of an iterable container of GroundCompatibilityRules from independently rounding each RandomVariableAtom to 1.0 or 0.0 with probability equal to its current truth value.
getExpectedWeightedCompatibility(WeightedGroundRule) - Static method in class org.linqs.psl.grounding.GroundRules: Computes the expected weighted compatibility (1 - incompatibility) of a WeightedGroundRule.
getExpression() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule
getExternalFunction() - Method in class org.linqs.psl.model.predicate.ExternalFunctionalPredicate: Get the ExternalFunction this predicate uses to compute truth values.
getFinalCoefficient() - Method in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression
getFloat(String, float) - Static method in class org.linqs.psl.config.Config
getFloat(String, Float) - Static method in class org.linqs.psl.config.Config
getFormula() - Method in class org.linqs.psl.database.DatabaseQuery
getFormula() - Method in class org.linqs.psl.model.formula.FormulaAnalysis
getFormula() - Method in class org.linqs.psl.model.formula.Negation
getFormula() - Method in class org.linqs.psl.model.rule.logical.AbstractLogicalRule
getFull() - Static method in class org.linqs.psl.util.Version
getFullMap() - Method in class org.linqs.psl.application.learning.weight.TrainingMap: Get the full mapping of target to truth atoms (RVAs and observed).
getFunction() - Method in class org.linqs.psl.reasoner.function.ConstraintTerm
getFunctionalAtoms() - Method in class org.linqs.psl.database.rdbms.Formula2SQL
getFunctionDefinition() - Method in class org.linqs.psl.model.rule.arithmetic.WeightedGroundArithmeticRule
getFunctionDefinition() - Method in class org.linqs.psl.model.rule.logical.WeightedGroundLogicalRule
getFunctionDefinition() - Method in interface org.linqs.psl.model.rule.WeightedGroundRule
getFunctionValue(GaussianProcessPrior.WeightConfig) - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior
getGlobalId() - Method in class org.linqs.psl.reasoner.admm.term.LocalVariable
getGlobalVariables() - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore: Get the RVAs managed by this term store.
getGroundingQuery(AtomManager) - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule
getGroundingQuery(AtomManager) - Method in class org.linqs.psl.model.rule.logical.AbstractLogicalRule
getGroundingQuery(AtomManager) - Method in interface org.linqs.psl.model.rule.Rule: Get the formual that we can use for grounding.
getGroundRule() - Method in class org.linqs.psl.reasoner.admm.term.ADMMObjectiveTerm
getGroundRules() - Method in interface org.linqs.psl.grounding.GroundRuleStore
getGroundRules(Rule) - Method in interface org.linqs.psl.grounding.GroundRuleStore: Returns every GroundRule that was instantiated by a given Rule.
getGroundRules() - Method in class org.linqs.psl.grounding.MemoryGroundRuleStore
getGroundRules(Rule) - Method in class org.linqs.psl.grounding.MemoryGroundRuleStore
getGroundRuleStore() - Method in class org.linqs.psl.application.inference.InferenceApplication
getGroundRuleStore() - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication
getGroundRuleStore() - Method in class org.linqs.psl.reasoner.term.blocker.ConstraintBlockerTermStore: Extremely hacky way to allow methods that require this to get ahold of the GroundRuleStore.
getHead() - Method in class org.linqs.psl.model.formula.Implication
getHistogram(String) - Method in class org.linqs.psl.database.rdbms.TableStats
getHostname() - Static method in class org.linqs.psl.util.SystemUtils
getID() - Method in class org.linqs.psl.database.Partition
getID() - Method in class org.linqs.psl.model.term.UniqueIntID
getID() - Method in class org.linqs.psl.model.term.UniqueStringID
getIgnoreVariables() - Method in class org.linqs.psl.database.DatabaseQuery
getIncidentGRs() - Method in class org.linqs.psl.reasoner.term.blocker.ConstraintBlockerTerm
getIncompatibility() - Method in class org.linqs.psl.model.rule.arithmetic.WeightedGroundArithmeticRule
getIncompatibility(GroundAtom, float) - Method in class org.linqs.psl.model.rule.arithmetic.WeightedGroundArithmeticRule
getIncompatibility() - Method in class org.linqs.psl.model.rule.logical.WeightedGroundLogicalRule
getIncompatibility(GroundAtom, float) - Method in class org.linqs.psl.model.rule.logical.WeightedGroundLogicalRule
getIncompatibility() - Method in interface org.linqs.psl.model.rule.WeightedGroundRule: Returns the incompatibility of the truth values of this GroundRule's GroundAtoms.
getIncompatibility(GroundAtom, float) - Method in interface org.linqs.psl.model.rule.WeightedGroundRule: Returns the incompatibility of the truth values of this GroundRule's GroundAtoms given the replacment of a single atom's value with another value.
getInfeasibility() - Method in class org.linqs.psl.model.rule.arithmetic.UnweightedGroundArithmeticRule
getInfeasibility() - Method in class org.linqs.psl.model.rule.logical.UnweightedGroundLogicalRule
getInfeasibility() - Method in class org.linqs.psl.model.rule.misc.GroundLinearConstraint
getInfeasibility() - Method in class org.linqs.psl.model.rule.misc.GroundValueConstraint
getInfeasibility() - Method in interface org.linqs.psl.model.rule.UnweightedGroundRule: Returns the infeasibility of the truth values of this GroundRule's GroundAtoms.
getInfeasibilityNorm(Iterable<UnweightedGroundRule>) - Static method in class org.linqs.psl.grounding.GroundRules: Computes the Euclidean norm of the infeasibilities of an iterable container of GroundConstraintRules.
getInferenceApplication(String, Model, Database) - Static method in class org.linqs.psl.application.inference.InferenceApplication: Construct an inference application given the data.
getInitialRoundIterator() - Method in class org.linqs.psl.reasoner.dcd.term.DCDStreamingTermStore
getInitialRoundIterator() - Method in class org.linqs.psl.reasoner.sgd.term.SGDStreamingTermStore
getInitialRoundIterator() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore: Get an iterator that will perform grounding queries and write the initial pages to disk.
getInserter(StandardPredicate, Partition) - Method in interface org.linqs.psl.database.DataStore: Creates an Inserter for persisting new GroundAtoms in a Partition.
getInserter(StandardPredicate, Partition) - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore
getInt(String, int) - Static method in class org.linqs.psl.config.Config
getInteger(String, Integer) - Static method in class org.linqs.psl.config.Config
getLagrange() - Method in class org.linqs.psl.reasoner.admm.term.LocalVariable
getLagrange() - Method in class org.linqs.psl.reasoner.dcd.term.DCDObjectiveTerm
getLagrangianPenalty() - Method in class org.linqs.psl.reasoner.admm.ADMMReasoner
getLatentVariables() - Method in class org.linqs.psl.application.learning.weight.TrainingMap: Gets the latent variables seen by this manager.
getLazyAtoms() - Method in class org.linqs.psl.database.atom.LazyAtomManager
getList(String, List<String>, boolean) - Static method in class org.linqs.psl.config.Config: Because list options can be quite large, we allow them to be suppressed on request.
getList(String, List<String>) - Static method in class org.linqs.psl.config.Config
getList(String, boolean) - Static method in class org.linqs.psl.config.Config
getList(String) - Static method in class org.linqs.psl.config.Config
getLocalVariables(int) - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore
getLocalVariableType() - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermGenerator
getLocalVariableType() - Method in class org.linqs.psl.reasoner.dcd.term.DCDTermGenerator
getLocalVariableType() - Method in class org.linqs.psl.reasoner.sgd.term.SGDTermGenerator
getLocalVariableType() - Method in class org.linqs.psl.reasoner.term.HyperplaneTermGenerator: Get the class object for the local vairable type.
getLong(String, long) - Static method in class org.linqs.psl.config.Config
getLong(String, Long) - Static method in class org.linqs.psl.config.Config
getLoss() - Method in class org.linqs.psl.application.learning.weight.VotedPerceptron
getMaxIter() - Method in class org.linqs.psl.reasoner.admm.ADMMReasoner
getMaxIter() - Method in class org.linqs.psl.reasoner.dcd.DCDReasoner
getMaxIter() - Method in class org.linqs.psl.reasoner.sgd.SGDReasoner
getMetadata() - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore
getName() - Method in class org.linqs.psl.database.Partition
getName() - Method in class org.linqs.psl.model.predicate.Predicate: Returns the name of this Predicate.
getName() - Method in class org.linqs.psl.model.rule.AbstractRule
getName() - Method in interface org.linqs.psl.model.rule.Rule
getName() - Method in enum org.linqs.psl.model.term.ConstantType
getName() - Method in class org.linqs.psl.model.term.Variable
getNegatedDNF() - Method in class org.linqs.psl.model.rule.logical.AbstractLogicalRule
getNegativeAtoms() - Method in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule
getNegLiterals() - Method in class org.linqs.psl.model.formula.FormulaAnalysis.DNFClause
getNewObject(String, String) - Static method in class org.linqs.psl.config.Config: Returns a new instance of the class whose name associated with the given configuration key.
getNewPartition() - Method in interface org.linqs.psl.database.DataStore: Requests a new Partition that is assigned an auto-generated name and the next unused ID.
getNewPartition() - Method in class org.linqs.psl.database.rdbms.DataStoreMetadata
getNewPartition() - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore
getNext(int) - Method in class org.linqs.psl.application.learning.weight.maxlikelihood.SimplexSampler: Samples a uniform point on the simplex of dimension d
getNextPoint(List<GaussianProcessPrior.WeightConfig>, int) - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior
getNoWriteIterator() - Method in class org.linqs.psl.reasoner.dcd.term.DCDStreamingTermStore
getNoWriteIterator() - Method in class org.linqs.psl.reasoner.sgd.term.SGDStreamingTermStore
getNoWriteIterator() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore: Get an iterator that will not write to disk.
getNumDNFClauses() - Method in class org.linqs.psl.model.formula.FormulaAnalysis
getNumGlobalVariables() - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore
getNumLocalVariables() - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore
getNumSummationVariables() - Method in class org.linqs.psl.model.rule.arithmetic.expression.SummationAtom
getNumThreads() - Static method in class org.linqs.psl.util.Parallel
getNumVariables() - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore
getNumVariables() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
getNumVariables() - Method in interface org.linqs.psl.reasoner.term.VariableTermStore
getObservedMap() - Method in class org.linqs.psl.application.learning.weight.TrainingMap: Get the mapping of observed to observed atoms.
getOpenDatabases() - Method in interface org.linqs.psl.database.DataStore: Get all the currenly open databases associated with this data store.
getOpenDatabases() - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore
getOpenDataStores() - Static method in class org.linqs.psl.database.rdbms.RDBMSDataStore
getOrderedAtoms() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule
getPartition(String) - Method in interface org.linqs.psl.database.DataStore: Gets a new Partition of the DataStore with the given name.
getPartition(String) - Method in class org.linqs.psl.database.rdbms.DataStoreMetadata
getPartition(String) - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore
getPartitions() - Method in interface org.linqs.psl.database.DataStore
getPartitions() - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore
getPersisted() - Method in class org.linqs.psl.model.atom.RandomVariableAtom
getPersistedCount() - Method in class org.linqs.psl.database.atom.PersistedAtomManager
getPersistedRVAtoms() - Method in class org.linqs.psl.database.atom.PersistedAtomManager
getPos(Variable) - Method in class org.linqs.psl.database.rdbms.RDBMSResultList
getPositiveAtoms() - Method in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule
getPosLiterals() - Method in class org.linqs.psl.model.formula.FormulaAnalysis.DNFClause
getPredicate() - Method in class org.linqs.psl.model.atom.Atom: Returns the predicate associated with this Atom.
getPredicate() - Method in class org.linqs.psl.model.atom.RandomVariableAtom
getPredicate() - Method in class org.linqs.psl.model.rule.arithmetic.expression.SummationAtom: Returns the predicate associated with this SummationAtom.
getPredicateInfo(Predicate) - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore: Helper method for getting a predicate handle
getPredicateRowCount(StandardPredicate) - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore
getProjectionMap() - Method in class org.linqs.psl.database.rdbms.Formula2SQL
getProjectionMap() - Method in class org.linqs.psl.database.rdbms.RawQuery
getProperty(String) - Static method in class org.linqs.psl.config.Config: Get a property from the configuration.
getQuery(Formula) - Method in class org.linqs.psl.database.rdbms.Formula2SQL
getQueryAtom() - Method in class org.linqs.psl.model.rule.arithmetic.expression.SummationAtom
getQueryFormula() - Method in class org.linqs.psl.model.formula.FormulaAnalysis.DNFClause
getQueryFormula() - Method in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression: Get a formula that can be used in a DatabaseQuery to fetch all the possibilites.
getReadPartitions() - Method in class org.linqs.psl.database.Database
getReasoner() - Method in class org.linqs.psl.application.inference.InferenceApplication
getRegisteredGroundRules(GroundAtom) - Method in class org.linqs.psl.grounding.AtomRegisterGroundRuleStore
getRegisteredPredicates() - Method in interface org.linqs.psl.database.DataStore: Returns the set of StandardPredicates registered with this DataStore.
getRegisteredPredicates() - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore
getRepresentativeMetric() - Method in class org.linqs.psl.evaluation.statistics.CategoricalEvaluator
getRepresentativeMetric() - Method in class org.linqs.psl.evaluation.statistics.ContinuousEvaluator
getRepresentativeMetric() - Method in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator
getRepresentativeMetric() - Method in class org.linqs.psl.evaluation.statistics.Evaluator
getRepresentativeMetric() - Method in class org.linqs.psl.evaluation.statistics.RankingEvaluator
getRewritableGroundingFormula(AtomManager) - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule
getRewritableGroundingFormula(AtomManager) - Method in class org.linqs.psl.model.rule.logical.AbstractLogicalRule
getRewritableGroundingFormula(AtomManager) - Method in interface org.linqs.psl.model.rule.Rule: Get a grounding formual that can be rewritten.
getRule() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule
getRule() - Method in class org.linqs.psl.model.rule.arithmetic.UnweightedGroundArithmeticRule
getRule() - Method in class org.linqs.psl.model.rule.arithmetic.WeightedGroundArithmeticRule
getRule() - Method in interface org.linqs.psl.model.rule.GroundRule
getRule() - Method in class org.linqs.psl.model.rule.logical.UnweightedGroundLogicalRule
getRule() - Method in class org.linqs.psl.model.rule.logical.WeightedGroundLogicalRule
getRule() - Method in class org.linqs.psl.model.rule.misc.GroundLinearConstraint
getRule() - Method in class org.linqs.psl.model.rule.misc.GroundValueConstraint
getRule() - Method in interface org.linqs.psl.model.rule.UnweightedGroundRule
getRule() - Method in interface org.linqs.psl.model.rule.WeightedGroundRule
getRules() - Method in class org.linqs.psl.model.Model
getRVACount() - Method in class org.linqs.psl.database.atom.AtomCache
getSelectivity(String) - Method in class org.linqs.psl.database.rdbms.TableStats: Get the selectivity (cardinality / total rows) of a specific column.
getShort(String, short) - Static method in class org.linqs.psl.config.Config
getShort(String, Short) - Static method in class org.linqs.psl.config.Config
getSQL(Formula) - Method in class org.linqs.psl.database.rdbms.Formula2SQL
getSQL() - Method in class org.linqs.psl.database.rdbms.RawQuery
getString(String, String) - Static method in class org.linqs.psl.config.Config
getStringAggregate(String, String, boolean) - Method in interface org.linqs.psl.database.rdbms.driver.DatabaseDriver: Get a string aggregating expression (one that would appear in the SELECT clause of a grouping query.
getStringAggregate(String, String, boolean) - Method in class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver
getStringAggregate(String, String, boolean) - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver
getSummationMapping() - Method in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression
getSummationVariable() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Cardinality
getSummationVariables() - Method in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression
getSurrogateKeyColumnDefinition(String) - Method in interface org.linqs.psl.database.rdbms.driver.DatabaseDriver: Get the SQL definition for a primary, surrogate (auto-increment) key for use in a CREATE TABLE statement.
getSurrogateKeyColumnDefinition(String) - Method in class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver
getSurrogateKeyColumnDefinition(String) - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver
getSystemTempDir() - Static method in class org.linqs.psl.util.SystemUtils
getTableAliases() - Method in class org.linqs.psl.database.rdbms.Formula2SQL
getTableStats(PredicateInfo) - Method in interface org.linqs.psl.database.rdbms.driver.DatabaseDriver: Get some statistics for a table.
getTableStats(PredicateInfo) - Method in class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver
getTableStats(PredicateInfo) - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver
getTableStats(DatabaseDriver) - Method in class org.linqs.psl.database.rdbms.PredicateInfo
getTargetAtoms() - Method in class org.linqs.psl.application.learning.weight.TrainingMap
getTargetAtoms(boolean) - Method in class org.linqs.psl.application.learning.weight.TrainingMap: Get all the target atoms (atoms for the RVA PAM) in one iterable.
getTempDir(String) - Static method in class org.linqs.psl.util.SystemUtils: Get a temp dir (path) that is unique to this user/host/prefix.
getTerm(int) - Method in class org.linqs.psl.reasoner.function.GeneralFunction
getTermPagePath(int) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
getTerms(GroundRule) - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore
getTermStore() - Method in class org.linqs.psl.application.inference.InferenceApplication
getThreadObject(String) - Static method in class org.linqs.psl.util.Parallel
getThreshold() - Method in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator
getThreshold() - Method in class org.linqs.psl.evaluation.statistics.RankingEvaluator
getTotalWeightedCompatibility(Iterable<WeightedGroundRule>) - Static method in class org.linqs.psl.grounding.GroundRules: Sums the total weighted compatibility (1 - incompatibility) of an iterable container of GroundCompatibilityRules.
getTotalWeightedIncompatibility(Iterable<WeightedGroundRule>) - Static method in class org.linqs.psl.grounding.GroundRules: Sums the total weighted incompatibility of an iterable container of GroundCompatibilityRules.
getTrainingMap() - Method in class org.linqs.psl.application.learning.weight.TrainingMap: Get the mapping of random to observed atoms.
getTruthAtoms() - Method in class org.linqs.psl.application.learning.weight.TrainingMap: Get all the truth atoms in one iterable.
getType(Constant) - Static method in enum org.linqs.psl.model.term.ConstantType
getType(Variable) - Method in class org.linqs.psl.model.term.VariableTypeMap: Returns the type of a given variable.
getTypeName(ConstantType) - Method in interface org.linqs.psl.database.rdbms.driver.DatabaseDriver: Get the type name for each argument type.
getTypeName(ConstantType) - Method in class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver
getTypeName(ConstantType) - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver
getUnboundVariables() - Method in class org.linqs.psl.model.formula.FormulaAnalysis.DNFClause: Returns any unbound variables.
getUnloggedProperty(String) - Static method in class org.linqs.psl.config.Config: Get a property, but don't log the access.
getUpsert(String, String[], String[]) - Method in interface org.linqs.psl.database.rdbms.driver.DatabaseDriver: Get the SQL for an upsert (merge) on the specified table and columns.
getUpsert(String, String[], String[]) - Method in class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver
getUpsert(String, String[], String[]) - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver
getUsername() - Static method in class org.linqs.psl.util.SystemUtils
getValue() - Method in class org.linqs.psl.model.atom.GroundAtom
getValue(ReadableDatabase, Constant...) - Method in interface org.linqs.psl.model.function.ExternalFunction
getValue(Map<SummationVariable, Integer>) - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Add
getValue(Map<SummationVariable, Integer>) - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Cardinality
getValue(Map<SummationVariable, Integer>) - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Coefficient: Get the value of a coefficient (which may require a reqursive descent).
getValue(Map<SummationVariable, Integer>) - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.ConstantNumber
getValue(Map<SummationVariable, Integer>) - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Divide
getValue(Map<SummationVariable, Integer>) - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Max
getValue(Map<SummationVariable, Integer>) - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Min
getValue(Map<SummationVariable, Integer>) - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Multiply
getValue(Map<SummationVariable, Integer>) - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Subtract
getValue() - Method in class org.linqs.psl.model.term.Attribute
getValue() - Method in class org.linqs.psl.model.term.DoubleAttribute
getValue() - Method in class org.linqs.psl.model.term.IntegerAttribute
getValue() - Method in class org.linqs.psl.model.term.LongAttribute
getValue() - Method in class org.linqs.psl.model.term.StringAttribute
getValue() - Method in class org.linqs.psl.reasoner.admm.term.LocalVariable
getValue() - Method in class org.linqs.psl.reasoner.function.ConstraintTerm
getValue() - Method in interface org.linqs.psl.reasoner.function.FunctionTerm: Returns the term's value
getValue() - Method in class org.linqs.psl.reasoner.function.GeneralFunction
getValue(float[]) - Method in class org.linqs.psl.reasoner.function.GeneralFunction: Get the value of this sum, but using the values passed in place of non-constants for the term.
getValue(GroundAtom, float) - Method in class org.linqs.psl.reasoner.function.GeneralFunction: Get the value of the sum, but replace the value of a single RVA with the given value.
getVariable() - Method in class org.linqs.psl.model.rule.arithmetic.expression.SummationVariable
getVariable(int) - Method in class org.linqs.psl.reasoner.term.Hyperplane
getVariableIndex(V) - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore
getVariableIndex(RandomVariableAtom) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
getVariableIndex(V) - Method in interface org.linqs.psl.reasoner.term.VariableTermStore: Get the index that matches up to getVariableValues().
getVariableMap() - Method in interface org.linqs.psl.database.QueryResultIterable: Get the mapping between variables and their index in the results.
getVariableMap() - Method in class org.linqs.psl.database.rdbms.RDBMSResultList
getVariables() - Method in class org.linqs.psl.model.atom.Atom: Get all the variables used by this atom.
getVariables() - Method in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression: Get the non-summation variables.
getVariables() - Method in class org.linqs.psl.model.term.VariableTypeMap: Returns all variables in the hashmap.
getVariables() - Method in class org.linqs.psl.reasoner.admm.term.ADMMObjectiveTerm: Get the variables used in this term.
getVariables() - Method in class org.linqs.psl.reasoner.term.Hyperplane
getVariables() - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore
getVariables() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
getVariables() - Method in interface org.linqs.psl.reasoner.term.VariableTermStore
getVariableTypes() - Method in class org.linqs.psl.database.rdbms.RawQuery
getVariableValues() - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore
getVariableValues() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
getVariableValues() - Method in interface org.linqs.psl.reasoner.term.VariableTermStore: Get the truth values for variabe atoms.
getVolatilePagePath(int) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
getWaitTime() - Method in class org.linqs.psl.util.Parallel.Worker
getWeight() - Method in class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule
getWeight() - Method in class org.linqs.psl.model.rule.arithmetic.WeightedGroundArithmeticRule
getWeight() - Method in class org.linqs.psl.model.rule.logical.WeightedGroundLogicalRule
getWeight() - Method in class org.linqs.psl.model.rule.logical.WeightedLogicalRule
getWeight() - Method in interface org.linqs.psl.model.rule.WeightedGroundRule: Returns the Weight of this WeightedGroundRule.
getWeight() - Method in interface org.linqs.psl.model.rule.WeightedRule
getWeights(double[]) - Method in class org.linqs.psl.application.learning.weight.search.grid.BaseGridSearch: Get the weight configuration at the current location.
getWeights(double[]) - Method in class org.linqs.psl.application.learning.weight.search.grid.ContinuousRandomGridSearch
getWeights(double[]) - Method in class org.linqs.psl.application.learning.weight.search.grid.GridSearch
getWeights(double[]) - Method in class org.linqs.psl.application.learning.weight.search.grid.RankSearch
getWLA(String, List<Rule>, Database, Database) - Static method in class org.linqs.psl.application.learning.weight.WeightLearningApplication: Construct a weight learning application given the data.
getWorkTime() - Method in class org.linqs.psl.util.Parallel.Worker
getWritePartition() - Method in class org.linqs.psl.database.Database
GIT_COMMIT_SHORT_DEFAULT - Static variable in class org.linqs.psl.util.Version
GIT_COMMIT_SHORT_KEY - Static variable in class org.linqs.psl.util.Version
GIT_DIRTY_KEY - Static variable in class org.linqs.psl.util.Version
GIT_PROPS - Static variable in class org.linqs.psl.config.Config
GridSearch - Class in org.linqs.psl.application.learning.weight.search.grid: An exhaustive grid search for weights.
GridSearch(Model, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.GridSearch
GridSearch(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.GridSearch
ground(AtomManager, ResultList, int) - Method in class org.linqs.psl.model.atom.QueryAtom
ground(AtomManager, ResultList, int, Constant[]) - Method in class org.linqs.psl.model.atom.QueryAtom: Ground using the passed in buffer.
ground(AtomManager, ResultList, int, Constant[], boolean) - Method in class org.linqs.psl.model.atom.QueryAtom
ground(AtomManager, Constant[], Map<Variable, Integer>) - Method in class org.linqs.psl.model.atom.QueryAtom
ground(AtomManager, Constant[], Map<Variable, Integer>, Constant[]) - Method in class org.linqs.psl.model.atom.QueryAtom
ground(AtomManager, Constant[], Map<Variable, Integer>, Constant[], boolean) - Method in class org.linqs.psl.model.atom.QueryAtom
ground(Constant[], Map<Variable, Integer>, AtomManager, List<GroundRule>) - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule
ground(Constant[], Map<Variable, Integer>, AtomManager, List<GroundRule>) - Method in class org.linqs.psl.model.rule.logical.AbstractLogicalRule
ground(Constant[], Map<Variable, Integer>, AtomManager, List<GroundRule>) - Method in interface org.linqs.psl.model.rule.Rule: Get the formual that we can use for grounding.
GROUND_RULE_STORE_DEFAULT - Static variable in class org.linqs.psl.application.inference.InferenceApplication
GROUND_RULE_STORE_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication
GROUND_RULE_STORE_KEY - Static variable in class org.linqs.psl.application.inference.InferenceApplication: The class to use for ground rule storage.
GROUND_RULE_STORE_KEY - Static variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication: The class to use for ground rule storage.
groundAll(Model, AtomManager, GroundRuleStore) - Static method in class org.linqs.psl.grounding.Grounding: Ground all the given rules.
groundAll(List<Rule>, AtomManager, GroundRuleStore) - Static method in class org.linqs.psl.grounding.Grounding: Ground all the given rules.
groundAll(AtomManager, GroundRuleStore) - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule
groundAll(AtomManager, GroundRuleStore) - Method in class org.linqs.psl.model.rule.logical.AbstractLogicalRule
groundAll(QueryResultIterable, AtomManager, GroundRuleStore) - Method in class org.linqs.psl.model.rule.logical.AbstractLogicalRule
groundAll(AtomManager, GroundRuleStore) - Method in interface org.linqs.psl.model.rule.Rule: Adds all GroundRules to a GroundRuleStore using the AtomManager to instantiate ground atoms.
groundAllSerial(List<Rule>, AtomManager, GroundRuleStore) - Static method in class org.linqs.psl.grounding.Grounding: Ground all the given rules one at a time.
GroundAtom - Class in org.linqs.psl.model.atom: An Atom with only GroundTerms for arguments.
GroundAtom(Predicate, Constant[], float) - Constructor for class org.linqs.psl.model.atom.GroundAtom
groundFormulaInstance(List<GroundAtom>, List<GroundAtom>, short) - Method in class org.linqs.psl.model.rule.logical.AbstractLogicalRule
groundFormulaInstance(List<GroundAtom>, List<GroundAtom>, short) - Method in class org.linqs.psl.model.rule.logical.UnweightedLogicalRule
groundFormulaInstance(List<GroundAtom>, List<GroundAtom>, short) - Method in class org.linqs.psl.model.rule.logical.WeightedLogicalRule
Grounding - Class in org.linqs.psl.grounding: Static utilities for common Model-grounding tasks.
GroundingOnlyPredicate - Class in org.linqs.psl.model.predicate: Commonly used FunctionalPredicates that get special treatment in PSL.
GroundLinearConstraint - Class in org.linqs.psl.model.rule.misc: A linear constraint on the truth values of GroundAtoms
GroundLinearConstraint(GroundAtom[], float[], FunctionComparator, float) - Constructor for class org.linqs.psl.model.rule.misc.GroundLinearConstraint
GroundRule - Interface in org.linqs.psl.model.rule: A function that either constrains or measures the compatibility of the values of GroundAtoms.
groundRule - Variable in class org.linqs.psl.reasoner.admm.term.ADMMObjectiveTerm
GroundRules - Class in org.linqs.psl.grounding: Static utilities for common GroundRule tasks.
GroundRules() - Constructor for class org.linqs.psl.grounding.GroundRules
groundRules - Variable in class org.linqs.psl.grounding.MemoryGroundRuleStore
groundRuleStore - Variable in class org.linqs.psl.application.inference.InferenceApplication
groundRuleStore - Variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication
GroundRuleStore - Interface in org.linqs.psl.grounding: Container for a set of GroundRules.
GroundValueConstraint - Class in org.linqs.psl.model.rule.misc: A simple constraint that fixes the truth value of a RandomVariableAtom
GroundValueConstraint(RandomVariableAtom, float) - Constructor for class org.linqs.psl.model.rule.misc.GroundValueConstraint
GuidedRandomGridSearch - Class in org.linqs.psl.application.learning.weight.search.grid: Randomly search a some locations and then look around those locations.
GuidedRandomGridSearch(Model, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.GuidedRandomGridSearch
GuidedRandomGridSearch(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.GuidedRandomGridSearch

H

H2DatabaseDriver - Class in org.linqs.psl.database.rdbms.driver
H2DatabaseDriver(H2DatabaseDriver.Type, String, boolean) - Constructor for class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver: Constructor for the H2 database driver.
H2DatabaseDriver.Type - Enum in org.linqs.psl.database.rdbms.driver
HardEM - Class in org.linqs.psl.application.learning.weight.em: EM algorithm which fits a point distribution to the single most probable assignment of truth values to the latent variables during the E-step.
HardEM(Model, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.em.HardEM
HardEM(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.em.HardEM
hasAtom(StandardPredicate, Constant...) - Method in class org.linqs.psl.database.Database
hasAtom(StandardPredicate, Constant...) - Method in interface org.linqs.psl.database.ReadableDatabase: Check to see if a ground atom exists in the database.
hasCachedAtom(StandardPredicate, Constant...) - Method in class org.linqs.psl.database.Database
hasCachedAtom(QueryAtom) - Method in class org.linqs.psl.database.Database
Hash - Class in org.linqs.psl.util: Compute hash digests.
HASH_PREFIX - Static variable in class org.linqs.psl.database.rdbms.PredicateInfo
hashCode() - Method in class org.linqs.psl.database.Partition
hashcode - Variable in class org.linqs.psl.model.atom.Atom
hashCode() - Method in class org.linqs.psl.model.atom.Atom
hashCode() - Method in class org.linqs.psl.model.formula.AbstractBranchFormula
hashCode() - Method in class org.linqs.psl.model.formula.Implication
hashCode() - Method in class org.linqs.psl.model.formula.Negation
hashCode() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule
hashCode() - Method in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression
hashCode() - Method in class org.linqs.psl.model.rule.arithmetic.expression.SummationAtom
hashCode() - Method in class org.linqs.psl.model.rule.arithmetic.expression.SummationVariable
hashCode() - Method in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule
hashCode() - Method in class org.linqs.psl.model.rule.logical.AbstractLogicalRule
hashCode() - Method in class org.linqs.psl.model.term.DoubleAttribute
hashCode() - Method in class org.linqs.psl.model.term.IntegerAttribute
hashCode() - Method in class org.linqs.psl.model.term.LongAttribute
hashCode() - Method in class org.linqs.psl.model.term.StringAttribute
hashCode() - Method in interface org.linqs.psl.model.term.Term
hashCode() - Method in class org.linqs.psl.model.term.UniqueIntID
hashCode() - Method in class org.linqs.psl.model.term.UniqueStringID
hashCode() - Method in class org.linqs.psl.model.term.Variable
hashCode() - Method in class org.linqs.psl.reasoner.admm.term.LocalVariable: Hash by global identifier.
HashCode - Class in org.linqs.psl.util: A utility to help build hash codes for objects.
hasNext() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator: Get the next term.
hasNext() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator: Get the next term.
hasSummation() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule
hasThreadObject(String) - Static method in class org.linqs.psl.util.Parallel
hasVariable(Variable) - Method in class org.linqs.psl.model.term.VariableTypeMap: Returns whether the given variable exists in the hashmap.
head - Variable in class org.linqs.psl.model.formula.Implication: The fuzzy singleton that is the head of the rule
HingeLossTerm - Class in org.linqs.psl.reasoner.admm.term: ADMMReasoner objective term of the form
weight * max(coefficients^T * x - constant, 0) All coefficients must be non-zero.
HingeLossTerm(GroundRule, Hyperplane<LocalVariable>) - Constructor for class org.linqs.psl.reasoner.admm.term.HingeLossTerm
Hyperband - Class in org.linqs.psl.application.learning.weight.search: Hyperband.
Hyperband(Model, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.Hyperband
Hyperband(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.Hyperband
Hyperplane<E extends ReasonerLocalVariable> - Class in org.linqs.psl.reasoner.term: Information representing a raw hyperplane.
Hyperplane(Class<E>, int, float) - Constructor for class org.linqs.psl.reasoner.term.Hyperplane
Hyperplane(E[], float[], float, int) - Constructor for class org.linqs.psl.reasoner.term.Hyperplane
HyperplaneTerm - Class in org.linqs.psl.reasoner.admm.term: Objective term for an ADMMReasoner that is based on a hyperplane in some way.
HyperplaneTerm(GroundRule, Hyperplane<LocalVariable>) - Constructor for class org.linqs.psl.reasoner.admm.term.HyperplaneTerm
HyperplaneTermGenerator<T extends ReasonerTerm,V extends ReasonerLocalVariable> - Class in org.linqs.psl.reasoner.term: A base term generator for terms that come from hyperplanes.
HyperplaneTermGenerator() - Constructor for class org.linqs.psl.reasoner.term.HyperplaneTermGenerator

I

id - Variable in class org.linqs.psl.util.Parallel.Worker
Implication - Class in org.linqs.psl.model.formula
Implication(Formula, Formula) - Constructor for class org.linqs.psl.model.formula.Implication
index(Connection, DatabaseDriver) - Method in class org.linqs.psl.database.rdbms.PredicateInfo
indexed() - Method in class org.linqs.psl.database.rdbms.PredicateInfo
indexOf(T[], T) - Static method in class org.linqs.psl.util.ArrayUtils
indexOf(T[], int, T) - Static method in class org.linqs.psl.util.ArrayUtils: Same semantics as List.indexOf().
indexOfReference(T[], T) - Static method in class org.linqs.psl.util.ArrayUtils
indexOfReference(T[], int, T) - Static method in class org.linqs.psl.util.ArrayUtils: Like indexOf(), but only checks for referential equality.
indexOfVariable(E) - Method in class org.linqs.psl.reasoner.term.Hyperplane
indexPredicates() - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore
inertia - Variable in class org.linqs.psl.application.learning.weight.VotedPerceptron
INERTIA_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.VotedPerceptron
INERTIA_KEY - Static variable in class org.linqs.psl.application.learning.weight.VotedPerceptron: The inertia that is used for adaptive step sizes.
inference() - Method in class org.linqs.psl.application.inference.InferenceApplication: Alias for inference() with committing atoms.
inference(boolean) - Method in class org.linqs.psl.application.inference.InferenceApplication: Minimizes the total weighted incompatibility of the GroundAtoms in the Database according to the Model and commits the updated truth values back to the Database.
inference(List<Rule>, Reasoner, GroundRuleStore, TermStore, TermGenerator, LazyAtomManager, int) - Static method in class org.linqs.psl.application.inference.LazyMPEInference: Do the full MPE inference process.
InferenceApplication - Class in org.linqs.psl.application.inference
InferenceApplication(Model, Database) - Constructor for class org.linqs.psl.application.inference.InferenceApplication
init() - Static method in class org.linqs.psl.config.Config: (Re)create and populate the initial config.
init(boolean, boolean, Predicate, Term[]) - Method in class org.linqs.psl.model.atom.Atom
init(GroundRuleStore, RandomVariableAtom[][], WeightedGroundRule[][], boolean[]) - Method in class org.linqs.psl.reasoner.term.blocker.ConstraintBlockerTermStore
init(int) - Method in class org.linqs.psl.util.Parallel.Worker: Called before any work is given.
initGroundModel() - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication: Initialize all the infrastructure dealing with the ground model.
initGroundModel(GroundRuleStore) - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication: Init the ground model using an already populated ground rule store.
initGroundModel(Reasoner, GroundRuleStore, TermStore, TermGenerator, PersistedAtomManager, TrainingMap) - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication: Pass in all the ground model infrastructure.
INITIAL_CONSENSUS_VALUE_DEFAULT - Static variable in class org.linqs.psl.reasoner.admm.ADMMReasoner
INITIAL_CONSENSUS_VALUE_KEY - Static variable in class org.linqs.psl.reasoner.admm.ADMMReasoner: The starting value for consensus variables.
INITIAL_LOCAL_VALUE_DEFAULT - Static variable in class org.linqs.psl.reasoner.admm.ADMMReasoner
INITIAL_LOCAL_VALUE_KEY - Static variable in class org.linqs.psl.reasoner.admm.ADMMReasoner: The starting value for local variables.
INITIAL_PATH_CACHE_SIZE - Static variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
INITIAL_SIZE_DEFAULT - Static variable in class org.linqs.psl.reasoner.term.MemoryTermStore
INITIAL_SIZE_KEY - Static variable in class org.linqs.psl.reasoner.term.MemoryTermStore: Initial size for the memory store.
initialIterationComplete(int, int, ByteBuffer, ByteBuffer) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore: A callback for the initial round iterator.
initialize() - Method in class org.linqs.psl.application.inference.InferenceApplication: Get objects ready for inference.
initialRound - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
InitialWeightGridSearch - Class in org.linqs.psl.application.learning.weight.search.grid: GridSearch over the initial weights and then run weight learning like normal.
InitialWeightGridSearch(Model, WeightLearningApplication, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.InitialWeightGridSearch
InitialWeightGridSearch(List<Rule>, WeightLearningApplication, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.InitialWeightGridSearch: The WeightLearningApplication should not have had initGroundModel() called yet.
InitialWeightHyperband - Class in org.linqs.psl.application.learning.weight.search: Hyperband, but the weights chosen are used as initial weights for further weight learning.
InitialWeightHyperband(Model, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.InitialWeightHyperband
InitialWeightHyperband(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.InitialWeightHyperband
InitialWeightRandomGridSearch - Class in org.linqs.psl.application.learning.weight.search.grid: Like InitialWeightGridSearch, but use random grid search instead of exhaustive.
InitialWeightRandomGridSearch(Model, WeightLearningApplication, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.InitialWeightRandomGridSearch
InitialWeightRandomGridSearch(List<Rule>, WeightLearningApplication, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.InitialWeightRandomGridSearch
InitialWeightRankSearch - Class in org.linqs.psl.application.learning.weight.search.grid: RankSearch over the initial weights and then run weight learning like normal.
InitialWeightRankSearch(Model, WeightLearningApplication, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.InitialWeightRankSearch
InitialWeightRankSearch(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.InitialWeightRankSearch
InitialWeightRankSearch(List<Rule>, WeightLearningApplication, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.InitialWeightRankSearch: The WeightLearningApplication should not have had initGroundModel() called yet.
initLatentGroundModel() - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication: The same as initGroundModel, but for latent variables.
inLatentMPEState - Variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication
inMPEState - Variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication: Flags to track if the current variable configuration is an MPE state.
insert(Object...) - Method in class org.linqs.psl.database.loading.Inserter: Insert a single object using the default truth value.
insertAll(List<List<Object>>) - Method in class org.linqs.psl.database.loading.Inserter: Insert several objects using the default truth value.
insertAll(List<List<Object>>) - Method in class org.linqs.psl.database.rdbms.RDBMSInserter
insertAllValues(List<Double>, List<List<Object>>) - Method in class org.linqs.psl.database.loading.Inserter: Insert several objects using the specified truth values.
insertAllValues(List<Double>, List<List<Object>>) - Method in class org.linqs.psl.database.rdbms.RDBMSInserter
Inserter - Class in org.linqs.psl.database.loading
Inserter(int) - Constructor for class org.linqs.psl.database.loading.Inserter
insertValue(double, Object...) - Method in class org.linqs.psl.database.loading.Inserter: Insert a single object using the specified truth value.
inspectLocation(double[]) - Method in class org.linqs.psl.application.learning.weight.search.grid.BaseGridSearch: Inspect the location defined by the given weights and give back its score (lower is better).
inspectLocation(double[]) - Method in class org.linqs.psl.application.learning.weight.search.grid.InitialWeightGridSearch
inspectLocation(double[]) - Method in class org.linqs.psl.application.learning.weight.search.grid.InitialWeightRandomGridSearch
inspectLocation(double[]) - Method in class org.linqs.psl.application.learning.weight.search.grid.InitialWeightRankSearch
instantiateNegatedGroundRule(Formula, List<GroundAtom>, List<GroundAtom>, String) - Method in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule
instantiateNegatedGroundRule(Formula, List<GroundAtom>, List<GroundAtom>, String) - Method in class org.linqs.psl.model.rule.logical.UnweightedGroundLogicalRule
instantiateNegatedGroundRule(Formula, List<GroundAtom>, List<GroundAtom>, String) - Method in class org.linqs.psl.model.rule.logical.WeightedGroundLogicalRule
instantiateObservedAtom(Predicate, Constant[], float) - Method in class org.linqs.psl.database.atom.AtomCache: Instantiates an ObservedAtom and stores it in this AtomCache.
instantiateRandomVariableAtom(StandardPredicate, Constant[], float) - Method in class org.linqs.psl.database.atom.AtomCache: Instantiates a RandomVariableAtom and stores it in this AtomCache.
IntegerAttribute - Class in org.linqs.psl.model.term: An Attribute that encapsulates an Integer.
IntegerAttribute(Integer) - Constructor for class org.linqs.psl.model.term.IntegerAttribute: Constructs an Integer attribute from an Integer
INTERNAL_STORE_DEFAULT - Static variable in class org.linqs.psl.reasoner.admm.term.ADMMTermStore
INTERNAL_STORE_KEY - Static variable in class org.linqs.psl.reasoner.admm.term.ADMMTermStore: Initial size for the memory store.
INTERNAL_WLA_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.search.InitialWeightHyperband
INTERNAL_WLA_KEY - Static variable in class org.linqs.psl.application.learning.weight.search.InitialWeightHyperband: The internal weight learning application (WLA) to use.
internalInference() - Method in class org.linqs.psl.application.inference.InferenceApplication: The implementation of the full inference by each class.
internalInference() - Method in class org.linqs.psl.application.inference.LazyMPEInference
inverse() - Method in class org.linqs.psl.util.FloatMatrix: Compute the inversion of this matrix.
INVERT_NEGATIVE_WEIGHTS_DEFAULT - Static variable in class org.linqs.psl.reasoner.term.HyperplaneTermGenerator
INVERT_NEGATIVE_WEIGHTS_KEY - Static variable in class org.linqs.psl.reasoner.term.HyperplaneTermGenerator: If true, then invert negative weight rules into their positive weight counterparts (negate the weight and expression).
isBlock() - Method in class org.linqs.psl.model.predicate.StandardPredicate
isClosed(StandardPredicate) - Method in class org.linqs.psl.database.atom.AtomManager: Calls ReadableDatabase.isClosed(StandardPredicate) on the encapsulated Database.
isClosed(StandardPredicate) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase
isClosed(StandardPredicate) - Method in interface org.linqs.psl.database.ReadableDatabase: Returns whether a StandardPredicate is closed in this Database.
isConstant() - Method in class org.linqs.psl.model.atom.ObservedAtom
isConstant() - Method in class org.linqs.psl.model.atom.RandomVariableAtom
isConstant() - Method in interface org.linqs.psl.reasoner.function.FunctionTerm: Returns whether the term is constant.
isConstant() - Method in class org.linqs.psl.reasoner.function.GeneralFunction
isGround() - Method in class org.linqs.psl.model.formula.FormulaAnalysis.DNFClause
isHigherRepresentativeBetter() - Method in class org.linqs.psl.evaluation.statistics.CategoricalEvaluator
isHigherRepresentativeBetter() - Method in class org.linqs.psl.evaluation.statistics.ContinuousEvaluator
isHigherRepresentativeBetter() - Method in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator
isHigherRepresentativeBetter() - Method in class org.linqs.psl.evaluation.statistics.Evaluator
isHigherRepresentativeBetter() - Method in class org.linqs.psl.evaluation.statistics.RankingEvaluator
isInstance(Constant) - Method in enum org.linqs.psl.model.term.ConstantType: Returns whether a GroundTerm is of the type identified by this ArgumentType
isLinear() - Method in class org.linqs.psl.model.atom.GroundAtom
isLinear() - Method in interface org.linqs.psl.reasoner.function.FunctionTerm: Returns whether the term is linear.
isLinear() - Method in class org.linqs.psl.reasoner.function.GeneralFunction
isLoaded() - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore
isLoaded() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
isLoaded() - Method in interface org.linqs.psl.reasoner.term.VariableTermStore: Is the term store loaded, and can it give an accurate term and variable count.
isNonNegative() - Method in class org.linqs.psl.reasoner.function.GeneralFunction
isQueriable() - Method in class org.linqs.psl.model.formula.FormulaAnalysis.DNFClause
isSquared() - Method in class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule
isSquared() - Method in class org.linqs.psl.model.rule.arithmetic.WeightedGroundArithmeticRule
isSquared() - Method in class org.linqs.psl.model.rule.logical.WeightedGroundLogicalRule
isSquared() - Method in class org.linqs.psl.model.rule.logical.WeightedLogicalRule
isSquared() - Method in interface org.linqs.psl.model.rule.WeightedGroundRule
isSquared() - Method in interface org.linqs.psl.model.rule.WeightedRule
isSquared() - Method in class org.linqs.psl.reasoner.function.GeneralFunction
isValid() - Method in class org.linqs.psl.database.rdbms.SelectivityHistogram: A histogram is not valid until either addHistogramBounds() or addHistogramExact() is called.
isWeighted() - Method in class org.linqs.psl.model.rule.arithmetic.UnweightedArithmeticRule
isWeighted() - Method in class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule
isWeighted() - Method in class org.linqs.psl.model.rule.logical.UnweightedLogicalRule
isWeighted() - Method in class org.linqs.psl.model.rule.logical.WeightedLogicalRule
isWeighted() - Method in interface org.linqs.psl.model.rule.Rule
isZero(double) - Static method in class org.linqs.psl.util.MathUtils
isZero(double, double) - Static method in class org.linqs.psl.util.MathUtils
isZero(float) - Static method in class org.linqs.psl.util.MathUtils
isZero(float, float) - Static method in class org.linqs.psl.util.MathUtils
ITER_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.em.ExpectationMaximization
ITER_KEY - Static variable in class org.linqs.psl.application.learning.weight.em.ExpectationMaximization: Key for positive int property for the number of iterations of expectation maximization to perform
iterations - Variable in class org.linqs.psl.application.learning.weight.em.ExpectationMaximization
iterations - Variable in class org.linqs.psl.util.Parallel.RunTimings
iterator() - Method in class org.linqs.psl.database.rdbms.RDBMSResultList
iterator() - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore
iterator() - Method in class org.linqs.psl.reasoner.term.blocker.ConstraintBlockerTermStore
iterator() - Method in class org.linqs.psl.reasoner.term.MemoryTermStore
iterator() - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore
iterator() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
IteratorUtils - Class in org.linqs.psl.util: Various static iterator/iterable utilities.
IteratorUtils.FilterFunction<T> - Interface in org.linqs.psl.util
IteratorUtils.MapFunction<T,S> - Interface in org.linqs.psl.util

J

join(SelectivityHistogram<T>) - Method in class org.linqs.psl.database.rdbms.SelectivityHistogram: Get a new histogram that represents the join of this histogram with another.
join(Iterable<? extends T>...) - Static method in class org.linqs.psl.util.IteratorUtils: Get an iterator that iterates over all the given iterables in whatever iteration order each provides.
join(char, List<? extends Object>) - Static method in class org.linqs.psl.util.ListUtils
join(String, List<? extends Object>) - Static method in class org.linqs.psl.util.ListUtils
join(char, Object...) - Static method in class org.linqs.psl.util.StringUtils
join(String, Object...) - Static method in class org.linqs.psl.util.StringUtils
join(char, int...) - Static method in class org.linqs.psl.util.StringUtils
join(String, int...) - Static method in class org.linqs.psl.util.StringUtils
join(char, long...) - Static method in class org.linqs.psl.util.StringUtils
join(String, long...) - Static method in class org.linqs.psl.util.StringUtils
join(char, float...) - Static method in class org.linqs.psl.util.StringUtils
join(String, float...) - Static method in class org.linqs.psl.util.StringUtils
join(char, double...) - Static method in class org.linqs.psl.util.StringUtils
join(String, double...) - Static method in class org.linqs.psl.util.StringUtils

K

keep(T) - Method in interface org.linqs.psl.util.IteratorUtils.FilterFunction
kernel(FloatMatrix, FloatMatrix) - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel: The actual kernel computation.
kernel(float[], float[], float[], float[], FloatMatrix, FloatMatrix) - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel: Compute the kernel, but use buffers provided by the caller.
kernel(float[], float[]) - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel: Compute the kernels, but allocate new buffer for the computation.
kernel(FloatMatrix, FloatMatrix) - Method in class org.linqs.psl.application.learning.weight.bayesian.SquaredExpKernel
KERNEL_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior
KERNEL_KEY - Static variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior
KEY_STATS_PERCENTAGE - Static variable in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver

L

L1_REGULARIZATION_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.VotedPerceptron
L1_REGULARIZATION_KEY - Static variable in class org.linqs.psl.application.learning.weight.VotedPerceptron: Key for positive double property scaling the L1 regularization \gamma * |w|
l1Regularization - Variable in class org.linqs.psl.application.learning.weight.VotedPerceptron
L2_REGULARIZATION_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.VotedPerceptron
L2_REGULARIZATION_KEY - Static variable in class org.linqs.psl.application.learning.weight.VotedPerceptron: Key for positive double property scaling the L2 regularization (\lambda / 2) * ||w||^2
l2Regularization - Variable in class org.linqs.psl.application.learning.weight.VotedPerceptron
lapack_sgesv(FloatMatrix) - Method in class org.linqs.psl.util.FloatMatrix: Call sgesv from LAPACK.
lapack_spotrf(boolean) - Method in class org.linqs.psl.util.FloatMatrix: Call spotrf from LAPACK.
latentGroundRuleStore - Variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication
latentTermStore - Variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication
LAZY_PARTITION_ID - Static variable in class org.linqs.psl.database.Partition: When grounding with lazy atoms, we will initially set their partition value to this so that we can tell them apart.
LazyAtomManager - Class in org.linqs.psl.database.atom: A persisted atom manager that will keep track of atoms that it returns, but that don't actually exist (lazy atoms).
LazyAtomManager(Database) - Constructor for class org.linqs.psl.database.atom.LazyAtomManager
LazyMaxLikelihoodMPE - Class in org.linqs.psl.application.learning.weight.maxlikelihood: Voted perception algorithm that does not require a ground model of pre-specified dimensionality.
LazyMaxLikelihoodMPE(Model, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.maxlikelihood.LazyMaxLikelihoodMPE
LazyMaxLikelihoodMPE(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.maxlikelihood.LazyMaxLikelihoodMPE
LazyMPEInference - Class in org.linqs.psl.application.inference: Performs MPE inference (see MPEInference), but does not require all ground atoms to be specified ahead of time.
LazyMPEInference(Model, Database) - Constructor for class org.linqs.psl.application.inference.LazyMPEInference
learn() - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication: Learns new weights.
LEARNING_RATE_DEFAULT - Static variable in class org.linqs.psl.reasoner.sgd.SGDReasoner
LEARNING_RATE_KEY - Static variable in class org.linqs.psl.reasoner.sgd.SGDReasoner
length() - Method in class org.linqs.psl.model.formula.AbstractBranchFormula
LinearConstraintTerm - Class in org.linqs.psl.reasoner.admm.term: ADMMReasoner objective term of the form: (0 if coefficients^T * x OP constant) or (infinity otherwise).
LinearConstraintTerm(GroundRule, Hyperplane<LocalVariable>, FunctionComparator) - Constructor for class org.linqs.psl.reasoner.admm.term.LinearConstraintTerm
LinearLossTerm - Class in org.linqs.psl.reasoner.admm.term: ADMMReasoner objective term of the form
weight * coefficients^T * x
ListUtils - Class in org.linqs.psl.util: Various static List utilities.
loadDelimitedData(String) - Method in class org.linqs.psl.database.loading.Inserter: Load data without a truth value from a file.
loadDelimitedData(String, String) - Method in class org.linqs.psl.database.loading.Inserter
loadDelimitedDataAutomatic(String) - Method in class org.linqs.psl.database.loading.Inserter: Peek at the first line and then choose loadDelimitedData() or loadDelimitedDataTruth().
loadDelimitedDataAutomatic(String, String) - Method in class org.linqs.psl.database.loading.Inserter
loadDelimitedDataTruth(String) - Method in class org.linqs.psl.database.loading.Inserter: Load data with a truth value from a file.
loadDelimitedDataTruth(String, String) - Method in class org.linqs.psl.database.loading.Inserter
loadResource(InputStream, String) - Static method in class org.linqs.psl.config.Config
loadResource(String) - Static method in class org.linqs.psl.config.Config
LocalVariable - Class in org.linqs.psl.reasoner.admm.term: The local context of a variable.
LocalVariable(int, float) - Constructor for class org.linqs.psl.reasoner.admm.term.LocalVariable: In the context of ADMM, local variables should be initialized with the initial value of the global variable they are tracking.
logDiskRead(long) - Static method in class org.linqs.psl.util.RuntimeStats: Tell the RuntimeStats about an io operation.
logDiskWrite(long) - Static method in class org.linqs.psl.util.RuntimeStats: Tell the RuntimeStats about an io operation.
LongAttribute - Class in org.linqs.psl.model.term: An Attribute that encapsulates a Double.
LongAttribute(Long) - Constructor for class org.linqs.psl.model.term.LongAttribute: Constructs a Double attribute from a Double
looksLikeNegativePrior() - Method in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression

M

mae() - Method in class org.linqs.psl.evaluation.statistics.ContinuousEvaluator
main(String[]) - Static method in class org.linqs.psl.application.learning.weight.maxlikelihood.SimplexSampler
makeGroundRule(float[], GroundAtom[], FunctionComparator, float) - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule
makeGroundRule(List<Float>, List<GroundAtom>, FunctionComparator, float) - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule
makeGroundRule(float[], GroundAtom[], FunctionComparator, float) - Method in class org.linqs.psl.model.rule.arithmetic.UnweightedArithmeticRule
makeGroundRule(List<Float>, List<GroundAtom>, FunctionComparator, float) - Method in class org.linqs.psl.model.rule.arithmetic.UnweightedArithmeticRule
makeGroundRule(float[], GroundAtom[], FunctionComparator, float) - Method in class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule
makeGroundRule(List<Float>, List<GroundAtom>, FunctionComparator, float) - Method in class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule
makeKernel(GaussianProcessKernel.KernelType, GaussianProcessPrior) - Static method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel
map(Iterable<T>, IteratorUtils.MapFunction<T, S>) - Static method in class org.linqs.psl.util.IteratorUtils: Given an Iterable, return a new Iterable that invokes the function once on each item.
map(T) - Method in interface org.linqs.psl.util.IteratorUtils.MapFunction
MathUtils - Class in org.linqs.psl.util: Various static math utilities.
Max - Class in org.linqs.psl.model.rule.arithmetic.expression.coefficient
Max(Coefficient, Coefficient) - Constructor for class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Max
MAX_CONFIGS_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior
MAX_CONFIGS_KEY - Static variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior
MAX_FLIPS_DEFAULT - Static variable in class org.linqs.psl.reasoner.bool.BooleanMaxWalkSat: Default value for MAX_FLIPS_KEY
MAX_FLIPS_KEY - Static variable in class org.linqs.psl.reasoner.bool.BooleanMaxWalkSat: Key for positive integer property that is the maximum number of flips to try during optimization
MAX_ITER_DEFAULT - Static variable in class org.linqs.psl.reasoner.admm.ADMMReasoner
MAX_ITER_DEFAULT - Static variable in class org.linqs.psl.reasoner.dcd.DCDReasoner
MAX_ITER_DEFAULT - Static variable in class org.linqs.psl.reasoner.sgd.SGDReasoner
MAX_ITER_KEY - Static variable in class org.linqs.psl.reasoner.admm.ADMMReasoner: The maximum number of iterations of ADMM to perform in a round of inference.
MAX_ITER_KEY - Static variable in class org.linqs.psl.reasoner.dcd.DCDReasoner: The maximum number of iterations of SGD to perform in a round of inference.
MAX_ITER_KEY - Static variable in class org.linqs.psl.reasoner.sgd.SGDReasoner: The maximum number of iterations of SGD to perform in a round of inference.
MAX_ITERATIONS_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior
MAX_ITERATIONS_KEY - Static variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior
MAX_LOCATIONS_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.search.grid.ContinuousRandomGridSearch
MAX_LOCATIONS_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.search.grid.RandomGridSearch
MAX_LOCATIONS_KEY - Static variable in class org.linqs.psl.application.learning.weight.search.grid.ContinuousRandomGridSearch: The max number of locations to search.
MAX_LOCATIONS_KEY - Static variable in class org.linqs.psl.application.learning.weight.search.grid.RandomGridSearch: The max number of locations to search.
MAX_RAND_INT_VAL - Static variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior
MAX_RANDOM_WEIGHT - Static variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication
MAX_ROUNDS_DEFAULT - Static variable in class org.linqs.psl.application.inference.LazyMPEInference
MAX_ROUNDS_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.maxlikelihood.LazyMaxLikelihoodMPE
MAX_ROUNDS_KEY - Static variable in class org.linqs.psl.application.inference.LazyMPEInference: Key for int property for the maximum number of rounds of inference.
MAX_ROUNDS_KEY - Static variable in class org.linqs.psl.application.learning.weight.maxlikelihood.LazyMaxLikelihoodMPE: Key for int property for the maximum number of rounds of lazy growing.
MAX_TABLE_NAME_LENGTH - Static variable in class org.linqs.psl.database.rdbms.PredicateInfo
MaxLikelihoodMPE - Class in org.linqs.psl.application.learning.weight.maxlikelihood: Learns weights by optimizing the log likelihood of the data using the voted perceptron algorithm.
MaxLikelihoodMPE(Model, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.maxlikelihood.MaxLikelihoodMPE
MaxLikelihoodMPE(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.maxlikelihood.MaxLikelihoodMPE
maxNumLocations - Variable in class org.linqs.psl.application.learning.weight.search.grid.BaseGridSearch: The number of actual possible locations.
maxNumSteps - Variable in class org.linqs.psl.application.learning.weight.VotedPerceptron
MaxPiecewisePseudoLikelihood - Class in org.linqs.psl.application.learning.weight.maxlikelihood: Learns weights by optimizing the piecewise-pseudo-log-likelihood of the data using the voted perceptron algorithm.
MaxPiecewisePseudoLikelihood(Model, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPiecewisePseudoLikelihood
MaxPiecewisePseudoLikelihood(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPiecewisePseudoLikelihood
MaxPseudoLikelihood - Class in org.linqs.psl.application.learning.weight.maxlikelihood: Learns weights by optimizing the pseudo-log-likelihood of the data using the voted perceptron algorithm.
MaxPseudoLikelihood(Model, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPseudoLikelihood
MaxPseudoLikelihood(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPseudoLikelihood
maxRounds - Variable in class org.linqs.psl.application.inference.LazyMPEInference
md5(String) - Static method in class org.linqs.psl.util.Hash
md5(byte[]) - Static method in class org.linqs.psl.util.Hash
MEAN - Static variable in class org.linqs.psl.application.learning.weight.search.Hyperband
MemoryGroundRuleStore - Class in org.linqs.psl.grounding: A simple GroundRuleStore that just stores each GroundRule in memory.
MemoryGroundRuleStore() - Constructor for class org.linqs.psl.grounding.MemoryGroundRuleStore
MemoryTermStore<T extends ReasonerTerm> - Class in org.linqs.psl.reasoner.term
MemoryTermStore() - Constructor for class org.linqs.psl.reasoner.term.MemoryTermStore
MemoryTermStore(int) - Constructor for class org.linqs.psl.reasoner.term.MemoryTermStore
MemoryVariableTermStore<T extends ReasonerTerm,V extends ReasonerLocalVariable> - Class in org.linqs.psl.reasoner.term: A general TermStore that handles terms and variables all in memory.
MemoryVariableTermStore() - Constructor for class org.linqs.psl.reasoner.term.MemoryVariableTermStore
METADATA_TABLENAME - Static variable in class org.linqs.psl.database.rdbms.DataStoreMetadata
Min - Class in org.linqs.psl.model.rule.arithmetic.expression.coefficient
Min(Coefficient, Coefficient) - Constructor for class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Min
MIN_ADMM_STEPS - Static variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication
MIN_BRACKET_SIZE - Static variable in class org.linqs.psl.application.learning.weight.search.Hyperband
MIN_BUDGET_PROPORTION - Static variable in class org.linqs.psl.application.learning.weight.search.Hyperband
MIN_SCALING_FACTOR - Static variable in class org.linqs.psl.application.learning.weight.em.HardEM
MIN_WIDTH_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPseudoLikelihood
MIN_WIDTH_KEY - Static variable in class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPseudoLikelihood: Key for positive double property.
minimize(float, float[]) - Method in class org.linqs.psl.reasoner.admm.term.ADMMObjectiveTerm: Updates x to the solution of
argmin f(x) + stepSize / 2 * \|x - z + y / stepSize \|_2^2
for the objective term f(x)
minimize(float, float[]) - Method in class org.linqs.psl.reasoner.admm.term.HingeLossTerm
minimize(float, float[]) - Method in class org.linqs.psl.reasoner.admm.term.LinearConstraintTerm
minimize(float, float[]) - Method in class org.linqs.psl.reasoner.admm.term.LinearLossTerm
minimize(float, float[]) - Method in class org.linqs.psl.reasoner.admm.term.SquaredHingeLossTerm
minimize(float, float[]) - Method in class org.linqs.psl.reasoner.admm.term.SquaredLinearLossTerm
minimize(boolean, float[]) - Method in class org.linqs.psl.reasoner.dcd.term.DCDObjectiveTerm
minimize(int, float[]) - Method in class org.linqs.psl.reasoner.sgd.term.SGDObjectiveTerm
minWeightedSquaredHyperplane(float, float[]) - Method in class org.linqs.psl.reasoner.admm.term.SquaredHyperplaneTerm: Minimizes the weighted, squared hyperplane
argmin weight * (coefficients^T * x - constant)^2 + stepSize/2 * \|x - z + y / stepSize \|_2^2
model - Variable in class org.linqs.psl.application.inference.InferenceApplication
Model - Class in org.linqs.psl.model: A probabilistic soft logic model.
Model() - Constructor for class org.linqs.psl.model.Model
ModelApplication - Interface in org.linqs.psl.application
moveToWritePartition(StandardPredicate, int) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase
moveToWritePartition(StandardPredicate, int) - Method in interface org.linqs.psl.database.WritableDatabase: Move all ground atoms of a predicate/partition combination into the write partition.
MPEInference - Class in org.linqs.psl.application.inference: Infers the most-probable explanation (MPE) state of the RandomVariableAtoms persisted in a Database, according to a Model, given the Database's ObservedAtoms.
MPEInference(Model, Database) - Constructor for class org.linqs.psl.application.inference.MPEInference
mse() - Method in class org.linqs.psl.evaluation.statistics.ContinuousEvaluator
mStep() - Method in class org.linqs.psl.application.learning.weight.em.ExpectationMaximization: The Maximization step in the EM algorithm.
mul(float) - Method in class org.linqs.psl.util.FloatMatrix: Scalar multiplication (not in-place).
mul(float, boolean) - Method in class org.linqs.psl.util.FloatMatrix: Scalar multiplication.
mul(FloatMatrix) - Method in class org.linqs.psl.util.FloatMatrix: Matrix multiplication without transposition or scaling.
mul(FloatMatrix, boolean, boolean, float) - Method in class org.linqs.psl.util.FloatMatrix: Matrix multiplication.
mul(FloatMatrix, FloatMatrix, boolean, boolean, float, float) - Method in class org.linqs.psl.util.FloatMatrix: Matrix multiplication.
Multiply - Class in org.linqs.psl.model.rule.arithmetic.expression.coefficient
Multiply(Coefficient, Coefficient) - Constructor for class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Multiply
mutableRules - Variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication

N

name - Variable in class org.linqs.psl.model.rule.AbstractRule
NAME_KEY - Static variable in class org.linqs.psl.database.rdbms.DataStoreMetadata
negate() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule
negate() - Method in interface org.linqs.psl.model.rule.GroundRule: Negate this ground rule and get the corresponding ground rule(s).
negate() - Method in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule: Negating logical rules (a disjunction) will generate multiple other rules.
negate() - Method in class org.linqs.psl.model.rule.misc.GroundLinearConstraint
negate() - Method in class org.linqs.psl.model.rule.misc.GroundValueConstraint
negatedDNF - Variable in class org.linqs.psl.model.rule.logical.AbstractLogicalRule
Negation - Class in org.linqs.psl.model.formula: This class implements fuzzy negation.
Negation(Formula) - Constructor for class org.linqs.psl.model.formula.Negation
negativeAUPRC() - Method in class org.linqs.psl.evaluation.statistics.RankingEvaluator: Returns area under the precision recall curve for the negative class.
negativePrecision() - Method in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator
negativeRecall() - Method in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator
negLiterals - Variable in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule
newIterable(Iterator<T>) - Static method in class org.linqs.psl.util.IteratorUtils: Make an Iterable from and Interator.
newObject(String) - Static method in class org.linqs.psl.util.Reflection
newObject(Class<?>) - Static method in class org.linqs.psl.util.Reflection
next() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator
next() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator
nextBoolean() - Static method in class org.linqs.psl.util.RandUtils
nextCachedTermIndex - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator
nextDouble() - Static method in class org.linqs.psl.util.RandUtils
nextFloat() - Static method in class org.linqs.psl.util.RandUtils
nextFloat(float, float) - Static method in class org.linqs.psl.util.RandUtils
nextGaussian() - Static method in class org.linqs.psl.util.RandUtils
nextInt() - Static method in class org.linqs.psl.util.RandUtils: Get an int in the range of a signed int.
nextInt(int) - Static method in class org.linqs.psl.util.RandUtils: Get an int in the range [0, max).
nextLong() - Static method in class org.linqs.psl.util.RandUtils
nextTerm - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator
nextTerm - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator
NOISE_DEFAULT - Static variable in class org.linqs.psl.reasoner.bool.BooleanMaxWalkSat: Default value for NOISE_KEY
NOISE_KEY - Static variable in class org.linqs.psl.reasoner.bool.BooleanMaxWalkSat: Key for double property in [0,1] that is the probability of randomly perturbing an atom in a randomly chosen potential
NonSymmetric - Static variable in class org.linqs.psl.model.predicate.GroundingOnlyPredicate: True if the first argument is less than the second.
norm1() - Method in class org.linqs.psl.util.FloatMatrix: Get the 1-norm (sum of absolute values).
norm2() - Method in class org.linqs.psl.util.FloatMatrix: Get the 2-norm (Euclidean norm) (square root of sum of squared values).
NotEqual - Static variable in class org.linqs.psl.model.predicate.GroundingOnlyPredicate: True if arguments are not equal.
noWriteIterator() - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore
noWriteIterator() - Method in class org.linqs.psl.reasoner.term.blocker.ConstraintBlockerTermStore
noWriteIterator() - Method in class org.linqs.psl.reasoner.term.MemoryTermStore
noWriteIterator() - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore
noWriteIterator() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore: Get an iterator that goes over all the terms for only reading.
noWriteIterator() - Method in interface org.linqs.psl.reasoner.term.TermStore: Get an iterator over the terms in the store that does not write to disk.
NUM_BRACKETS_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.search.Hyperband
NUM_BRACKETS_KEY - Static variable in class org.linqs.psl.application.learning.weight.search.Hyperband: The number of brackets to consider.
NUM_BURN_IN_DEFAULT - Static variable in class org.linqs.psl.reasoner.bool.BooleanMCSat: Default value for NUM_BURN_IN_KEY
NUM_BURN_IN_KEY - Static variable in class org.linqs.psl.reasoner.bool.BooleanMCSat: Number of burn-in samples
NUM_SAMPLES_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPiecewisePseudoLikelihood
NUM_SAMPLES_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPseudoLikelihood
NUM_SAMPLES_DEFAULT - Static variable in class org.linqs.psl.reasoner.bool.BooleanMCSat: Default value for NUM_SAMPLES_KEY
NUM_SAMPLES_KEY - Static variable in class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPiecewisePseudoLikelihood: Key for positive integer property.
NUM_SAMPLES_KEY - Static variable in class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPseudoLikelihood: Key for positive integer property.
NUM_SAMPLES_KEY - Static variable in class org.linqs.psl.reasoner.bool.BooleanMCSat: Key for length of Markov chain
NUM_STEPS_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.VotedPerceptron
NUM_STEPS_KEY - Static variable in class org.linqs.psl.application.learning.weight.VotedPerceptron: Key for positive integer property.
NUM_THREADS_DEFAULT - Static variable in class org.linqs.psl.util.Parallel
NUM_THREADS_KEY - Static variable in class org.linqs.psl.util.Parallel
numCols() - Method in class org.linqs.psl.util.FloatMatrix
numLocations - Variable in class org.linqs.psl.application.learning.weight.search.grid.BaseGridSearch: The number of locations we will search.
numPages - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator
numPages - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator
numPages - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
numRows() - Method in class org.linqs.psl.util.FloatMatrix
numSteps - Variable in class org.linqs.psl.application.learning.weight.VotedPerceptron

O

OBJ_TOL_DEFAULT - Static variable in class org.linqs.psl.reasoner.dcd.DCDReasoner
OBJ_TOL_DEFAULT - Static variable in class org.linqs.psl.reasoner.sgd.SGDReasoner
OBJ_TOL_KEY - Static variable in class org.linqs.psl.reasoner.dcd.DCDReasoner: The maximum number of iterations of SGD to perform in a round of inference.
OBJ_TOL_KEY - Static variable in class org.linqs.psl.reasoner.sgd.SGDReasoner: The maximum number of iterations of SGD to perform in a round of inference.
OBJECTIVE_BREAK_DEFAULT - Static variable in class org.linqs.psl.reasoner.admm.ADMMReasoner
OBJECTIVE_BREAK_DEFAULT - Static variable in class org.linqs.psl.reasoner.dcd.DCDReasoner
OBJECTIVE_BREAK_DEFAULT - Static variable in class org.linqs.psl.reasoner.sgd.SGDReasoner
OBJECTIVE_BREAK_KEY - Static variable in class org.linqs.psl.reasoner.admm.ADMMReasoner: Stop if the objective has not changed since the last logging period (see LOG_PERIOD_KEY).
OBJECTIVE_BREAK_KEY - Static variable in class org.linqs.psl.reasoner.dcd.DCDReasoner: Stop if the objective has not changed since the last logging period (see LOG_PERIOD).
OBJECTIVE_BREAK_KEY - Static variable in class org.linqs.psl.reasoner.sgd.SGDReasoner: Stop if the objective has not changed since the last logging period (see LOG_PERIOD).
objectives - Variable in class org.linqs.psl.application.learning.weight.search.grid.BaseGridSearch: The objectives at each location.
ObservedAtom - Class in org.linqs.psl.model.atom: A GroundAtom with a fixed truth value.
ObservedAtom(Predicate, Constant[], float) - Constructor for class org.linqs.psl.model.atom.ObservedAtom: Instantiation of GrondAtoms should typically be left to the Database so it can maintain a cache.
observedDB - Variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication
observedIncompatibility - Variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication: Corresponds 1-1 with mutableRules.
ones(int, int) - Static method in class org.linqs.psl.util.FloatMatrix: Make a ones matrix.
optimize(TermStore) - Method in class org.linqs.psl.reasoner.admm.ADMMReasoner
optimize(TermStore, ADMMReasoner.InitialValue, ADMMReasoner.InitialValue) - Method in class org.linqs.psl.reasoner.admm.ADMMReasoner
optimize(TermStore) - Method in class org.linqs.psl.reasoner.bool.BooleanMaxWalkSat
optimize(TermStore) - Method in class org.linqs.psl.reasoner.bool.BooleanMCSat
optimize(TermStore) - Method in class org.linqs.psl.reasoner.dcd.DCDReasoner
optimize(TermStore) - Method in class org.linqs.psl.reasoner.ExecutableReasoner
optimize(TermStore) - Method in interface org.linqs.psl.reasoner.Reasoner: Minimizes the total weighted incompatibility of the terms in the provided TermStore.
optimize(TermStore) - Method in class org.linqs.psl.reasoner.sgd.SGDReasoner
org.linqs.psl.application - package org.linqs.psl.application
org.linqs.psl.application.inference - package org.linqs.psl.application.inference
org.linqs.psl.application.learning.weight - package org.linqs.psl.application.learning.weight
org.linqs.psl.application.learning.weight.bayesian - package org.linqs.psl.application.learning.weight.bayesian
org.linqs.psl.application.learning.weight.em - package org.linqs.psl.application.learning.weight.em
org.linqs.psl.application.learning.weight.maxlikelihood - package org.linqs.psl.application.learning.weight.maxlikelihood
org.linqs.psl.application.learning.weight.search - package org.linqs.psl.application.learning.weight.search
org.linqs.psl.application.learning.weight.search.grid - package org.linqs.psl.application.learning.weight.search.grid
org.linqs.psl.config - package org.linqs.psl.config
org.linqs.psl.database - package org.linqs.psl.database
org.linqs.psl.database.atom - package org.linqs.psl.database.atom
org.linqs.psl.database.loading - package org.linqs.psl.database.loading
org.linqs.psl.database.rdbms - package org.linqs.psl.database.rdbms
org.linqs.psl.database.rdbms.driver - package org.linqs.psl.database.rdbms.driver
org.linqs.psl.evaluation.statistics - package org.linqs.psl.evaluation.statistics
org.linqs.psl.grounding - package org.linqs.psl.grounding
org.linqs.psl.model - package org.linqs.psl.model
org.linqs.psl.model.atom - package org.linqs.psl.model.atom
org.linqs.psl.model.formula - package org.linqs.psl.model.formula
org.linqs.psl.model.function - package org.linqs.psl.model.function
org.linqs.psl.model.predicate - package org.linqs.psl.model.predicate
org.linqs.psl.model.rule - package org.linqs.psl.model.rule
org.linqs.psl.model.rule.arithmetic - package org.linqs.psl.model.rule.arithmetic
org.linqs.psl.model.rule.arithmetic.expression - package org.linqs.psl.model.rule.arithmetic.expression
org.linqs.psl.model.rule.arithmetic.expression.coefficient - package org.linqs.psl.model.rule.arithmetic.expression.coefficient
org.linqs.psl.model.rule.logical - package org.linqs.psl.model.rule.logical
org.linqs.psl.model.rule.misc - package org.linqs.psl.model.rule.misc
org.linqs.psl.model.term - package org.linqs.psl.model.term
org.linqs.psl.reasoner - package org.linqs.psl.reasoner
org.linqs.psl.reasoner.admm - package org.linqs.psl.reasoner.admm
org.linqs.psl.reasoner.admm.term - package org.linqs.psl.reasoner.admm.term
org.linqs.psl.reasoner.bool - package org.linqs.psl.reasoner.bool
org.linqs.psl.reasoner.dcd - package org.linqs.psl.reasoner.dcd
org.linqs.psl.reasoner.dcd.term - package org.linqs.psl.reasoner.dcd.term
org.linqs.psl.reasoner.function - package org.linqs.psl.reasoner.function
org.linqs.psl.reasoner.sgd - package org.linqs.psl.reasoner.sgd
org.linqs.psl.reasoner.sgd.term - package org.linqs.psl.reasoner.sgd.term
org.linqs.psl.reasoner.term - package org.linqs.psl.reasoner.term
org.linqs.psl.reasoner.term.blocker - package org.linqs.psl.reasoner.term.blocker
org.linqs.psl.reasoner.term.streaming - package org.linqs.psl.reasoner.term.streaming
org.linqs.psl.util - package org.linqs.psl.util
outputStats() - Static method in class org.linqs.psl.util.RuntimeStats: Ouput collected stats.
OVERALLOCATION_RATIO - Static variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator

P

PAGE_LOCATION_DEFAULT - Static variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
PAGE_LOCATION_KEY - Static variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore: Where on disk to write term pages.
PAGE_SIZE_DEFAULT - Static variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
PAGE_SIZE_KEY - Static variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore: The number of terms in a single page.
pageAccessOrder - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator
pageDir - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
pageSize - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator
pageSize - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
PairedDualLearner - Class in org.linqs.psl.application.learning.weight.em: Learns the parameters of a HL-MRF with latent variables, using a maximum-likelihood technique that interleaves updates of the parameters and inference steps for fast training.
PairedDualLearner(Model, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.em.PairedDualLearner
PairedDualLearner(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.em.PairedDualLearner
pairedShuffle(List...) - Static method in class org.linqs.psl.util.RandUtils: Shuffle multiple lists, but keep the elements that share indexes together.
pairedShuffleIndexes(List<T>, int[]) - Static method in class org.linqs.psl.util.RandUtils: A version of pairedShuffle() optimized for very specific list types.
Parallel - Class in org.linqs.psl.util: Utilities to run operations in parallel.
Parallel.RunTimings - Class in org.linqs.psl.util
Parallel.Worker<T> - Class in org.linqs.psl.util: Extend this class for any work.
parentDataStore - Variable in class org.linqs.psl.database.Database: The backing data store that created this database.
parentStore - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator
parentStore - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator
parentWaitTimeMS - Variable in class org.linqs.psl.util.Parallel.RunTimings
Partition - Class in org.linqs.psl.database
Partition(int, String) - Constructor for class org.linqs.psl.database.Partition: Sole constructor.
PARTITION_COLUMN_NAME - Static variable in class org.linqs.psl.database.rdbms.PredicateInfo
PARTITION_NAMESPACE - Static variable in class org.linqs.psl.database.rdbms.DataStoreMetadata
pendingGroundRules - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator
permutations(int) - Static method in class org.linqs.psl.util.IteratorUtils: Get an iterator that gives all the permutations of the numbers 0 - size.
PersistedAccessException(RandomVariableAtom) - Constructor for exception org.linqs.psl.database.atom.PersistedAtomManager.PersistedAccessException
PersistedAtomManager - Class in org.linqs.psl.database.atom: Implements the AtomManager with a twist: this AtomManager will only return RandomVariableAtoms that were persisted in the Database at instantiation.
PersistedAtomManager(Database) - Constructor for class org.linqs.psl.database.atom.PersistedAtomManager
PersistedAtomManager(Database, boolean) - Constructor for class org.linqs.psl.database.atom.PersistedAtomManager: Constructs a PersistedAtomManager with a built-in set of all the database's persisted RandomVariableAtoms.
PersistedAtomManager.PersistedAccessException - Exception in org.linqs.psl.database.atom
point - Variable in class org.linqs.psl.reasoner.admm.term.HyperplaneTerm
positiveAUPRC() - Method in class org.linqs.psl.evaluation.statistics.RankingEvaluator: Returns area under the precision recall curve.
positivePrecision() - Method in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator
positiveRecall() - Method in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator
posLiterals - Variable in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule
POSSIBLE_WEIGHTS_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.search.grid.GridSearch
POSSIBLE_WEIGHTS_KEY - Static variable in class org.linqs.psl.application.learning.weight.search.grid.GridSearch: A comma-separated list of possible weights.
possibleWeights - Variable in class org.linqs.psl.application.learning.weight.search.grid.GridSearch
PostgreSQLDriver - Class in org.linqs.psl.database.rdbms.driver: PostgreSQL Connection Wrapper.
PostgreSQLDriver(String, boolean) - Constructor for class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver
PostgreSQLDriver(String, String, String, boolean) - Constructor for class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver
PostgreSQLDriver(String, String, boolean) - Constructor for class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver
postInitGroundModel() - Method in class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPiecewisePseudoLikelihood
postInitGroundModel() - Method in class org.linqs.psl.application.learning.weight.search.grid.ContinuousRandomGridSearch
postInitGroundModel() - Method in class org.linqs.psl.application.learning.weight.search.grid.InitialWeightGridSearch
postInitGroundModel() - Method in class org.linqs.psl.application.learning.weight.search.grid.InitialWeightRandomGridSearch
postInitGroundModel() - Method in class org.linqs.psl.application.learning.weight.search.grid.InitialWeightRankSearch
postInitGroundModel() - Method in class org.linqs.psl.application.learning.weight.search.InitialWeightHyperband
postInitGroundModel() - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication: A convenient place for children to do additional ground model initialization.
powerset(int) - Static method in class org.linqs.psl.util.IteratorUtils: Get an iterator that will go through the powerset of the specified size.
predicate() - Method in class org.linqs.psl.database.rdbms.PredicateInfo
predicate - Variable in class org.linqs.psl.model.atom.Atom
Predicate - Class in org.linqs.psl.model.predicate: A relation that can be applied to Terms to form Atoms.
Predicate(String, ConstantType[]) - Constructor for class org.linqs.psl.model.predicate.Predicate
Predicate(String, ConstantType[], boolean) - Constructor for class org.linqs.psl.model.predicate.Predicate
predicate - Variable in class org.linqs.psl.model.rule.arithmetic.expression.SummationAtom
PREDICATE_TABLE_SUFFIX - Static variable in class org.linqs.psl.database.rdbms.PredicateInfo
PredicateInfo - Class in org.linqs.psl.database.rdbms
PredicateInfo(Predicate) - Constructor for class org.linqs.psl.database.rdbms.PredicateInfo
predictFnValAndStd(float[], List<GaussianProcessPrior.WeightConfig>) - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior: predictFnValAndStd, but no memory sharing.
predictFnValAndStd(float[], List<GaussianProcessPrior.WeightConfig>, float[], float[], float[], FloatMatrix, FloatMatrix, FloatMatrix, FloatMatrix) - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior: Do the prediction.
PRINT_INITIAL_OBJECTIVE_DEFAULT - Static variable in class org.linqs.psl.reasoner.dcd.DCDReasoner
PRINT_INITIAL_OBJECTIVE_DEFAULT - Static variable in class org.linqs.psl.reasoner.sgd.SGDReasoner
PRINT_INITIAL_OBJECTIVE_KEY - Static variable in class org.linqs.psl.reasoner.dcd.DCDReasoner: Print the objective before any optimization.
PRINT_INITIAL_OBJECTIVE_KEY - Static variable in class org.linqs.psl.reasoner.sgd.SGDReasoner: Print the objective before any optimization.
PRINT_OBJECTIVE - Static variable in class org.linqs.psl.reasoner.sgd.SGDReasoner
PRINT_OBJECTIVE_DEFAULT - Static variable in class org.linqs.psl.reasoner.dcd.DCDReasoner
PRINT_OBJECTIVE_DEFAULT - Static variable in class org.linqs.psl.reasoner.sgd.SGDReasoner
PRINT_OBJECTIVE_KEY - Static variable in class org.linqs.psl.reasoner.dcd.DCDReasoner
project(float, float[]) - Method in class org.linqs.psl.reasoner.admm.term.HyperplaneTerm: Finds the orthogonal projection onto the hyperplane
argmin stepSize/2 * \|x - z + y / stepSize \|_2^2
such that coefficients^T * x = constant.
PROJECT_PROPS - Static variable in class org.linqs.psl.config.Config
PSL_CONFIG - Static variable in class org.linqs.psl.config.Config
PSL_CONFIG_DEFAULT - Static variable in class org.linqs.psl.config.Config
putThreadObject(String, Object) - Static method in class org.linqs.psl.util.Parallel

Q

QueryAtom - Class in org.linqs.psl.model.atom: An Atom that can be used in a query, but does not have a truth value.
QueryAtom(Predicate, Term...) - Constructor for class org.linqs.psl.model.atom.QueryAtom
queryIterable - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator
QueryResultIterable - Interface in org.linqs.psl.database
queryResults - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator
QueryRewriter - Class in org.linqs.psl.database.rdbms: Try to rewrite a grounding query to make it more efficient.
QueryRewriter() - Constructor for class org.linqs.psl.database.rdbms.QueryRewriter
QueryRewriter.CostEstimator - Enum in org.linqs.psl.database.rdbms: The different methods for estimating the join cost.

R

RANDOM_CONFIGS_ONLY_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior
RANDOM_CONFIGS_ONLY_KEY - Static variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior
RANDOM_WEIGHTS_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication
RANDOM_WEIGHTS_KEY - Static variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication: Randomize weights before running.
randomConfiguration() - Method in class org.linqs.psl.application.learning.weight.search.grid.RandomGridSearch
RandomGridSearch - Class in org.linqs.psl.application.learning.weight.search.grid: A random grid search that searches a finite number of locations.
RandomGridSearch(Model, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.RandomGridSearch
RandomGridSearch(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.RandomGridSearch
RANDOMIZE_PAGE_ACCESS_DEFAULT - Static variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
RANDOMIZE_PAGE_ACCESS_KEY - Static variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore: Whether to pick up pages in a random order.
randomizePageAccess - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
randomlyInitialize() - Method in class org.linqs.psl.reasoner.term.blocker.ConstraintBlockerTerm: Randomly initializes the RandomVariableAtoms to a feasible state.
randomlyInitialize() - Method in class org.linqs.psl.reasoner.term.blocker.ConstraintBlockerTermStore: Randomly initializes the RandomVariableAtoms to a feasible state.
RandomVariableAtom - Class in org.linqs.psl.model.atom: A GroundAtom with a truth value which can be modified.
RandomVariableAtom(StandardPredicate, Constant[], float) - Constructor for class org.linqs.psl.model.atom.RandomVariableAtom: Instantiation of GrondAtoms should typically be left to the Database so it can maintain a cache.
RandUtils - Class in org.linqs.psl.util: The canonical source of randomness for all PSL core code.
RankingEvaluator - Class in org.linqs.psl.evaluation.statistics: Compute various ranking statistics.
RankingEvaluator() - Constructor for class org.linqs.psl.evaluation.statistics.RankingEvaluator
RankingEvaluator(double) - Constructor for class org.linqs.psl.evaluation.statistics.RankingEvaluator
RankingEvaluator(double, String) - Constructor for class org.linqs.psl.evaluation.statistics.RankingEvaluator
RankingEvaluator(double, RankingEvaluator.RepresentativeMetric) - Constructor for class org.linqs.psl.evaluation.statistics.RankingEvaluator
RankingEvaluator.RepresentativeMetric - Enum in org.linqs.psl.evaluation.statistics
RankSearch - Class in org.linqs.psl.application.learning.weight.search.grid: A grid seach-like method that searchs over the possible rankings of rules.
RankSearch(Model, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.RankSearch
RankSearch(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.RankSearch
RawQuery - Class in org.linqs.psl.database.rdbms: A container for the information necessary to perform a raw SQL query.
RawQuery(RDBMSDatabase, Formula) - Constructor for class org.linqs.psl.database.rdbms.RawQuery
RawQuery(RDBMSDatabase, Formula, boolean) - Constructor for class org.linqs.psl.database.rdbms.RawQuery
RawQuery(RDBMSDatabase, DatabaseQuery) - Constructor for class org.linqs.psl.database.rdbms.RawQuery
RawQuery(String, Map<Variable, Integer>, VariableTypeMap) - Constructor for class org.linqs.psl.database.rdbms.RawQuery
rawToString() - Method in class org.linqs.psl.model.term.Constant: Get a string representation of the internal constant value.
rawToString() - Method in class org.linqs.psl.model.term.DoubleAttribute
rawToString() - Method in class org.linqs.psl.model.term.IntegerAttribute
rawToString() - Method in class org.linqs.psl.model.term.LongAttribute
rawToString() - Method in class org.linqs.psl.model.term.StringAttribute
rawToString() - Method in class org.linqs.psl.model.term.UniqueIntID
rawToString() - Method in class org.linqs.psl.model.term.UniqueStringID
RDBMSDatabase - Class in org.linqs.psl.database.rdbms: A view on the datastore with specific partitions activated.
RDBMSDatabase(RDBMSDataStore, Partition, Partition[], Set<StandardPredicate>) - Constructor for class org.linqs.psl.database.rdbms.RDBMSDatabase
RDBMSDataStore - Class in org.linqs.psl.database.rdbms: The RDMBSDataStore is an RDBMS implementation of the DataStore interface.
RDBMSDataStore(DatabaseDriver) - Constructor for class org.linqs.psl.database.rdbms.RDBMSDataStore: Returns an RDBMSDataStore that utilizes the connections returned by the DatabaseDriver.
RDBMSInserter - Class in org.linqs.psl.database.rdbms: An inserter that is aware of what predicate and partition it is inserting into.
RDBMSInserter(RDBMSDataStore, PredicateInfo, Partition) - Constructor for class org.linqs.psl.database.rdbms.RDBMSInserter
RDBMSResultList - Class in org.linqs.psl.database.rdbms
RDBMSResultList(int) - Constructor for class org.linqs.psl.database.rdbms.RDBMSResultList
read(ByteBuffer, ByteBuffer) - Method in class org.linqs.psl.reasoner.dcd.term.DCDObjectiveTerm: Assume the term that will be next read from the buffers.
read(ByteBuffer, ByteBuffer) - Method in class org.linqs.psl.reasoner.sgd.term.SGDObjectiveTerm: Assume the term that will be next read from the buffers.
ReadableDatabase - Interface in org.linqs.psl.database: A database for retrieving GroundAtoms.
readIDs - Variable in class org.linqs.psl.database.Database
readonly - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator
readPage(String, String) - Method in class org.linqs.psl.reasoner.dcd.term.DCDStreamingCacheIterator
readPage(String, String) - Method in class org.linqs.psl.reasoner.sgd.term.SGDStreamingCacheIterator
readPage(String, String) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator: Read a page and fill the termCache using freed terms from the termPool.
readPartitions - Variable in class org.linqs.psl.database.Database: The partition IDs that this database only reads from.
readResults(BufferedReader, TermStore) - Method in class org.linqs.psl.reasoner.ExecutableReasoner
reasoner - Variable in class org.linqs.psl.application.inference.InferenceApplication
reasoner - Variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication
Reasoner - Interface in org.linqs.psl.reasoner: An oprimizer to minimize the total weighted incompatibility of the terms provided by a TermStore.
REASONER_DEFAULT - Static variable in class org.linqs.psl.application.inference.InferenceApplication
REASONER_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication
REASONER_KEY - Static variable in class org.linqs.psl.application.inference.InferenceApplication: The class to use for a reasoner.
REASONER_KEY - Static variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication: The class to use for inference.
ReasonerLocalVariable - Interface in org.linqs.psl.reasoner.term: Local variables are the variables in reasoner terms.
ReasonerTerm - Interface in org.linqs.psl.reasoner.term
recursiveDelete(String) - Static method in class org.linqs.psl.util.SystemUtils
recursiveDelete(File) - Static method in class org.linqs.psl.util.SystemUtils
Reflection - Class in org.linqs.psl.util: Various utilties around objects and reflection.
registerPredicate(StandardPredicate) - Method in interface org.linqs.psl.database.DataStore: Registers a StandardPredicate so that GroundAtoms of that StandardPredicate can be persisted in this DataStore.
registerPredicate(StandardPredicate) - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore
REL_DEP_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel
REL_DEP_KEY - Static variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel
RELAXED_EPSILON - Static variable in class org.linqs.psl.util.MathUtils
RELAXED_EPSILON_FLOAT - Static variable in class org.linqs.psl.util.MathUtils
relDep - Variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel
releasePartitions(RDBMSDatabase) - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore
remove() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator
remove() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator
removeCachedAtom(QueryAtom) - Method in class org.linqs.psl.database.atom.AtomCache: Removes an atom from the AtomCache
removeGroundRule(GroundRule) - Method in class org.linqs.psl.grounding.AtomRegisterGroundRuleStore
removeGroundRule(GroundRule) - Method in interface org.linqs.psl.grounding.GroundRuleStore: Removes a GroundRule from this store.
removeGroundRule(GroundRule) - Method in class org.linqs.psl.grounding.MemoryGroundRuleStore: O(n).
removeGroundRules(Rule) - Method in class org.linqs.psl.grounding.AtomRegisterGroundRuleStore
removeGroundRules(Rule) - Method in interface org.linqs.psl.grounding.GroundRuleStore: Removes all GroundRules that was instantiated by a given rule.
removeGroundRules(Rule) - Method in class org.linqs.psl.grounding.MemoryGroundRuleStore: O(n).
removePartition(Partition) - Method in class org.linqs.psl.database.rdbms.DataStoreMetadata
removeRule(Rule) - Method in class org.linqs.psl.model.Model: Removes a Rule from this Model.
repeat(String, int) - Static method in class org.linqs.psl.util.StringUtils
repeat(String, String, int) - Static method in class org.linqs.psl.util.StringUtils
reportAccessException(RuntimeException, GroundAtom) - Method in class org.linqs.psl.database.atom.AtomManager: Decide whether or not to throw an access exception.
reportAccessException(RuntimeException, GroundAtom) - Method in class org.linqs.psl.database.atom.LazyAtomManager
reportAccessException(RuntimeException, GroundAtom) - Method in class org.linqs.psl.database.atom.PersistedAtomManager
reportAccessException(RuntimeException, GroundAtom) - Method in class org.linqs.psl.database.atom.SimpleAtomManager
REPRESENTATIVE_KEY - Static variable in class org.linqs.psl.evaluation.statistics.CategoricalEvaluator: The representative metric.
REPRESENTATIVE_KEY - Static variable in class org.linqs.psl.evaluation.statistics.ContinuousEvaluator: The representative metric.
REPRESENTATIVE_KEY - Static variable in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator: The representative metric.
REPRESENTATIVE_KEY - Static variable in class org.linqs.psl.evaluation.statistics.RankingEvaluator: The representative metric.
requiresSplit() - Method in class org.linqs.psl.model.rule.AbstractRule
requiresSplit() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule
requiresSplit() - Method in interface org.linqs.psl.model.rule.Rule: Check if this rule needs to be broken up into multiple rules.
resetLocalVairables() - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore
resetLocalVairables(ADMMReasoner.InitialValue) - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore
resolveClassName(String) - Static method in class org.linqs.psl.util.Reflection: Given a class's name (full or simple), resolve it to its full name.
ResultList - Interface in org.linqs.psl.database: List of substitutions for Variables in a Formula.
rewrite(Formula, RDBMSDataStore) - Method in class org.linqs.psl.database.rdbms.QueryRewriter: Rewrite the query to minimize the execution time while trading off query size.
REWRITE_QUERY_DEFAULT - Static variable in class org.linqs.psl.grounding.Grounding
REWRITE_QUERY_KEY - Static variable in class org.linqs.psl.grounding.Grounding: Potentially rewrite the grounding queries.
rowVector(float[]) - Static method in class org.linqs.psl.util.FloatMatrix
rowVector(float[], boolean) - Static method in class org.linqs.psl.util.FloatMatrix
rule - Variable in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule
rule - Variable in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule
Rule - Interface in org.linqs.psl.model.rule: A template for functions that either constrain or measure the compatibility of the values of GroundAtom.
rules - Variable in class org.linqs.psl.model.Model
rules - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator
rules - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
run(double[]) - Method in class org.linqs.psl.application.learning.weight.search.Hyperband: Run and eval on the given weights using the given budget (ratio of max resources) and give back its score (lower is better).
run(double[]) - Method in class org.linqs.psl.application.learning.weight.search.InitialWeightHyperband
run() - Method in class org.linqs.psl.util.Parallel.Worker
RuntimeStats - Class in org.linqs.psl.util: A static class that collects runtime stats in the background.
RunTimings(long, long, long, long) - Constructor for class org.linqs.psl.util.Parallel.RunTimings
rvDB - Variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication

S

scale - Variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel
SCALE_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel
SCALE_FACTOR - Static variable in class org.linqs.psl.application.learning.weight.search.grid.ContinuousRandomGridSearch
SCALE_GRADIENT_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.VotedPerceptron
SCALE_GRADIENT_KEY - Static variable in class org.linqs.psl.application.learning.weight.VotedPerceptron: Key for Boolean property that indicates whether to scale gradient by number of groundings
SCALE_KEY - Static variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel
SCALE_ORDERS_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.search.grid.ContinuousRandomGridSearch
SCALE_ORDERS_KEY - Static variable in class org.linqs.psl.application.learning.weight.search.grid.ContinuousRandomGridSearch: If greater than 0, then various different scaled versions of the weights will be tested.
SCALE_STEP_SIZE_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.VotedPerceptron
SCALE_STEP_SIZE_KEY - Static variable in class org.linqs.psl.application.learning.weight.VotedPerceptron: If true, then scale the step size down by the iteration.
scaleGradient - Variable in class org.linqs.psl.application.learning.weight.VotedPerceptron
scaleStepSize - Variable in class org.linqs.psl.application.learning.weight.VotedPerceptron
SCALING_FACTORS_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.search.grid.RankSearch
SCALING_FACTORS_KEY - Static variable in class org.linqs.psl.application.learning.weight.search.grid.RankSearch: A comma-separated list of scaling factors.
scalingWeights - Variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel
seed(int) - Static method in class org.linqs.psl.util.RandUtils
SEED_DEFAULT - Static variable in class org.linqs.psl.util.RandUtils
SEED_KEY - Static variable in class org.linqs.psl.util.RandUtils
SEED_LOCATIONS_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.search.grid.GuidedRandomGridSearch
SEED_LOCATIONS_KEY - Static variable in class org.linqs.psl.application.learning.weight.search.grid.GuidedRandomGridSearch: The number of locations to initially search.
seenTermCount - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
SelectivityHistogram<T extends Comparable<? super T>> - Class in org.linqs.psl.database.rdbms: A histrogram that represents the distribution of values in a column.
SelectivityHistogram() - Constructor for class org.linqs.psl.database.rdbms.SelectivityHistogram
separatorString() - Method in class org.linqs.psl.model.formula.AbstractBranchFormula
separatorString() - Method in class org.linqs.psl.model.formula.Conjunction
separatorString() - Method in class org.linqs.psl.model.formula.Disjunction
SERIAL_DEFAULT - Static variable in class org.linqs.psl.grounding.Grounding
SERIAL_KEY - Static variable in class org.linqs.psl.grounding.Grounding: Whether or not queries are being rewritten, perform the grounding queries one at a time.
set(int, int, float) - Method in class org.linqs.psl.util.FloatMatrix
setAccessException(boolean) - Method in class org.linqs.psl.model.atom.RandomVariableAtom
setBlasYKnownForTest(FloatMatrix) - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior: Only for testing.
setBlock(boolean) - Method in class org.linqs.psl.model.predicate.StandardPredicate
setBudget(double) - Method in class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPiecewisePseudoLikelihood
setBudget(double) - Method in class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPseudoLikelihood
setBudget(double) - Method in class org.linqs.psl.application.learning.weight.search.grid.GuidedRandomGridSearch
setBudget(double) - Method in class org.linqs.psl.application.learning.weight.search.grid.RandomGridSearch
setBudget(double) - Method in class org.linqs.psl.application.learning.weight.search.InitialWeightHyperband
setBudget(double) - Method in class org.linqs.psl.application.learning.weight.VotedPerceptron
setBudget(double) - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication: Set a budget (give as a proportion of the max budget).
setCategoryIndexes(int...) - Method in class org.linqs.psl.evaluation.statistics.CategoricalEvaluator
setColumnDefault(String, String, String) - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver: Set a default value for a column.
setConstant(float) - Method in class org.linqs.psl.reasoner.term.Hyperplane
setDefaultRandomVariables() - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication: Set RandomVariableAtoms with training labels to their default values.
setEpsilonAbs(float) - Method in class org.linqs.psl.reasoner.admm.ADMMReasoner
setEpsilonRel(float) - Method in class org.linqs.psl.reasoner.admm.ADMMReasoner
setKernelForTest(GaussianProcessKernel) - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior: Only for testing.
setKnownDataStdInvForTest(FloatMatrix) - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior: Only for testing.
setLabeledRandomVariables() - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication: Set RandomVariableAtoms with training labels to their observed values.
setLagrange(float) - Method in class org.linqs.psl.reasoner.admm.term.LocalVariable
setMaxIter(int) - Method in class org.linqs.psl.reasoner.admm.ADMMReasoner
setMaxIter(int) - Method in class org.linqs.psl.reasoner.dcd.DCDReasoner
setMaxIter(int) - Method in class org.linqs.psl.reasoner.sgd.SGDReasoner
setNonNegative(boolean) - Method in class org.linqs.psl.reasoner.function.GeneralFunction
setPersisted(boolean) - Method in class org.linqs.psl.model.atom.RandomVariableAtom
setProperty(String, Object) - Static method in class org.linqs.psl.config.Config: Set a property, this will replace any previously set values.
setSquared(boolean) - Method in class org.linqs.psl.reasoner.function.GeneralFunction
setupTable(Connection, DatabaseDriver) - Method in class org.linqs.psl.database.rdbms.PredicateInfo
setValue(float) - Method in class org.linqs.psl.model.atom.RandomVariableAtom: Sets the truth value of this Atom.
setValue(float) - Method in class org.linqs.psl.reasoner.admm.term.LocalVariable
setVariable(Variable, int) - Method in class org.linqs.psl.database.rdbms.RDBMSResultList
setWeight(double) - Method in class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule
setWeight(double) - Method in class org.linqs.psl.model.rule.arithmetic.WeightedGroundArithmeticRule
setWeight(double) - Method in class org.linqs.psl.model.rule.logical.WeightedGroundLogicalRule
setWeight(double) - Method in class org.linqs.psl.model.rule.logical.WeightedLogicalRule
setWeight(double) - Method in interface org.linqs.psl.model.rule.WeightedGroundRule: Sets a weight for this WeightedGroundRule.
setWeight(double) - Method in interface org.linqs.psl.model.rule.WeightedRule
setWork(int, T) - Method in class org.linqs.psl.util.Parallel.Worker
SGDMemoryTermStore - Class in org.linqs.psl.reasoner.sgd.term: An in-memory TermStore specifically for SDG terms.
SGDMemoryTermStore() - Constructor for class org.linqs.psl.reasoner.sgd.term.SGDMemoryTermStore
SGDObjectiveTerm - Class in org.linqs.psl.reasoner.sgd.term: A term in the objective to be optimized by a SGDReasoner.
SGDObjectiveTerm(VariableTermStore<SGDObjectiveTerm, RandomVariableAtom>, boolean, boolean, Hyperplane<RandomVariableAtom>, float, float) - Constructor for class org.linqs.psl.reasoner.sgd.term.SGDObjectiveTerm
SGDReasoner - Class in org.linqs.psl.reasoner.sgd: Uses an SGD optimization method to optimize its GroundRules.
SGDReasoner() - Constructor for class org.linqs.psl.reasoner.sgd.SGDReasoner
SGDStreamingCacheIterator - Class in org.linqs.psl.reasoner.sgd.term
SGDStreamingCacheIterator(SGDStreamingTermStore, boolean, List<SGDObjectiveTerm>, List<SGDObjectiveTerm>, ByteBuffer, ByteBuffer, boolean, int[], boolean, int) - Constructor for class org.linqs.psl.reasoner.sgd.term.SGDStreamingCacheIterator
SGDStreamingInference - Class in org.linqs.psl.application.inference
SGDStreamingInference(Model, Database) - Constructor for class org.linqs.psl.application.inference.SGDStreamingInference
SGDStreamingInitialRoundIterator - Class in org.linqs.psl.reasoner.sgd.term: Iterate over all the terms that come up from grounding.
SGDStreamingInitialRoundIterator(SGDStreamingTermStore, List<WeightedRule>, AtomManager, HyperplaneTermGenerator<SGDObjectiveTerm, RandomVariableAtom>, List<SGDObjectiveTerm>, List<SGDObjectiveTerm>, ByteBuffer, ByteBuffer, int) - Constructor for class org.linqs.psl.reasoner.sgd.term.SGDStreamingInitialRoundIterator
SGDStreamingTermStore - Class in org.linqs.psl.reasoner.sgd.term: A term store that iterates over ground queries directly (obviating the GroundRuleStore).
SGDStreamingTermStore(List<Rule>, AtomManager) - Constructor for class org.linqs.psl.reasoner.sgd.term.SGDStreamingTermStore
SGDTermGenerator - Class in org.linqs.psl.reasoner.sgd.term: A TermGenerator for SGD objective terms.
SGDTermGenerator() - Constructor for class org.linqs.psl.reasoner.sgd.term.SGDTermGenerator
sha(String) - Static method in class org.linqs.psl.util.Hash
sha(byte[]) - Static method in class org.linqs.psl.util.Hash
sha256(String) - Static method in class org.linqs.psl.util.Hash
sha256(byte[]) - Static method in class org.linqs.psl.util.Hash
shuffle() - Method in class org.linqs.psl.reasoner.term.MemoryTermStore
shuffle(List<?>) - Static method in class org.linqs.psl.util.RandUtils
SHUFFLE_DEFAULT - Static variable in class org.linqs.psl.reasoner.term.MemoryVariableTermStore
SHUFFLE_KEY - Static variable in class org.linqs.psl.reasoner.term.MemoryVariableTermStore: Shuffle the terms before each return of iterator().
SHUFFLE_PAGE_DEFAULT - Static variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
SHUFFLE_PAGE_KEY - Static variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore: Whether to shuffle within a page when it is picked up.
shuffleMap - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator
shuffleMap - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore: When we shuffle pages, we need to know how they were shuffled so the volatile cache can be writtten in the same order.
shufflePage - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator
shufflePage - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
signsMatch(int, int) - Static method in class org.linqs.psl.util.MathUtils
signsMatch(float, float) - Static method in class org.linqs.psl.util.MathUtils
signsMatch(double, double) - Static method in class org.linqs.psl.util.MathUtils
SimpleAtomManager - Class in org.linqs.psl.database.atom: AtomManager that does not provide any functionality beyond passing calls to underlying components.
SimpleAtomManager(Database) - Constructor for class org.linqs.psl.database.atom.SimpleAtomManager
SimplexSampler - Class in org.linqs.psl.application.learning.weight.maxlikelihood
SimplexSampler() - Constructor for class org.linqs.psl.application.learning.weight.maxlikelihood.SimplexSampler
simplify() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Add
simplify() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Cardinality
simplify() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Coefficient: Get a simplified version of this Coefficient, the Coefficient itself if it cannot be simplified further.
simplify() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.ConstantNumber
simplify() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Divide
simplify() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Max
simplify() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Min
simplify() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Multiply
simplify() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Subtract
size() - Method in class org.linqs.psl.database.rdbms.RDBMSResultList
size() - Method in class org.linqs.psl.database.rdbms.SelectivityHistogram: Get the number of rows represented by this histogram.
size() - Method in interface org.linqs.psl.database.ResultList
size() - Method in interface org.linqs.psl.grounding.GroundRuleStore
size() - Method in class org.linqs.psl.grounding.MemoryGroundRuleStore
size() - Method in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule
size - Variable in class org.linqs.psl.reasoner.admm.term.ADMMObjectiveTerm
size() - Method in class org.linqs.psl.reasoner.admm.term.ADMMObjectiveTerm: Get the number of variables in this term.
size() - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore
size() - Method in class org.linqs.psl.reasoner.dcd.term.DCDObjectiveTerm
size() - Method in class org.linqs.psl.reasoner.function.GeneralFunction
size() - Method in class org.linqs.psl.reasoner.sgd.term.SGDObjectiveTerm
size() - Method in class org.linqs.psl.reasoner.term.blocker.ConstraintBlockerTerm
size() - Method in class org.linqs.psl.reasoner.term.blocker.ConstraintBlockerTermStore
size() - Method in class org.linqs.psl.reasoner.term.Hyperplane
size() - Method in class org.linqs.psl.reasoner.term.MemoryTermStore
size() - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore
size() - Method in interface org.linqs.psl.reasoner.term.ReasonerTerm
size() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
size() - Method in interface org.linqs.psl.reasoner.term.TermStore
size() - Method in class org.linqs.psl.util.FloatMatrix
SMALL_VALUE - Static variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior
smallFactorial(int) - Static method in class org.linqs.psl.util.MathUtils
sort(String) - Static method in class org.linqs.psl.util.StringUtils
space - Variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel
SPACE_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel
SPACE_KEY - Static variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel
split() - Method in class org.linqs.psl.model.rule.AbstractRule
split() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule
split() - Method in interface org.linqs.psl.model.rule.Rule: Split this rule into multiple rules.
splitDouble(String, char) - Static method in class org.linqs.psl.util.StringUtils
splitDouble(String, String) - Static method in class org.linqs.psl.util.StringUtils
splitFloat(String, char) - Static method in class org.linqs.psl.util.StringUtils
splitFloat(String, String) - Static method in class org.linqs.psl.util.StringUtils
splitInt(String, char) - Static method in class org.linqs.psl.util.StringUtils
splitInt(String, String) - Static method in class org.linqs.psl.util.StringUtils
splitLong(String, char) - Static method in class org.linqs.psl.util.StringUtils
splitLong(String, String) - Static method in class org.linqs.psl.util.StringUtils
squared - Variable in class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule
squared - Variable in class org.linqs.psl.model.rule.logical.WeightedLogicalRule
SquaredExpKernel - Class in org.linqs.psl.application.learning.weight.bayesian
SquaredExpKernel() - Constructor for class org.linqs.psl.application.learning.weight.bayesian.SquaredExpKernel
SquaredExpKernel(float[]) - Constructor for class org.linqs.psl.application.learning.weight.bayesian.SquaredExpKernel
SquaredHingeLossTerm - Class in org.linqs.psl.reasoner.admm.term: ADMMReasoner objective term of the form
weight * [max(coefficients^T * x - constant, 0)]^2
SquaredHingeLossTerm(GroundRule, Hyperplane<LocalVariable>) - Constructor for class org.linqs.psl.reasoner.admm.term.SquaredHingeLossTerm
SquaredHyperplaneTerm - Class in org.linqs.psl.reasoner.admm.term: Objective term for an ADMMReasoner that is based on a squared hyperplane in some way.
SquaredHyperplaneTerm(GroundRule, Hyperplane<LocalVariable>) - Constructor for class org.linqs.psl.reasoner.admm.term.SquaredHyperplaneTerm
SquaredLinearLossTerm - Class in org.linqs.psl.reasoner.admm.term: ADMMReasoner objective term of the form
weight * (coeffs^T * x - constant)^2
SquaredLinearLossTerm(GroundRule, Hyperplane<LocalVariable>) - Constructor for class org.linqs.psl.reasoner.admm.term.SquaredLinearLossTerm
StandardPredicate - Class in org.linqs.psl.model.predicate: Predicate of GroundAtoms that can be persisted.
STEP_SIZE_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.VotedPerceptron
STEP_SIZE_DEFAULT - Static variable in class org.linqs.psl.reasoner.admm.ADMMReasoner
STEP_SIZE_KEY - Static variable in class org.linqs.psl.application.learning.weight.VotedPerceptron: Key for positive double property which will be multiplied with the objective gradient to compute a step.
STEP_SIZE_KEY - Static variable in class org.linqs.psl.reasoner.admm.ADMMReasoner: Step size.
stopCollection() - Static method in class org.linqs.psl.util.RuntimeStats
StreamingCacheIterator<T extends ReasonerTerm> - Class in org.linqs.psl.reasoner.term.streaming: Iterate over all the terms from the disk cache.
StreamingCacheIterator(StreamingTermStore<T>, boolean, List<T>, List<T>, ByteBuffer, ByteBuffer, boolean, int[], boolean, int) - Constructor for class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator
StreamingInitialRoundIterator<T extends ReasonerTerm> - Class in org.linqs.psl.reasoner.term.streaming: Iterate over all the terms that come up from grounding.
StreamingInitialRoundIterator(StreamingTermStore<T>, List<WeightedRule>, AtomManager, HyperplaneTermGenerator<T, RandomVariableAtom>, List<T>, List<T>, ByteBuffer, ByteBuffer, int) - Constructor for class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator
StreamingIterator<T extends ReasonerTerm> - Interface in org.linqs.psl.reasoner.term.streaming: Iterate over all the terms from grounding/cache.
StreamingTermStore<T extends ReasonerTerm> - Class in org.linqs.psl.reasoner.term.streaming
StreamingTermStore(List<Rule>, AtomManager, HyperplaneTermGenerator<T, RandomVariableAtom>) - Constructor for class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
STRICT_EPSILON - Static variable in class org.linqs.psl.util.MathUtils
STRICT_EPSILON_FLOAT - Static variable in class org.linqs.psl.util.MathUtils
StringAttribute - Class in org.linqs.psl.model.term: An Attribute that encapsulates a String.
StringAttribute(String) - Constructor for class org.linqs.psl.model.term.StringAttribute: Constructs a StringAttribute from a String
StringUtils - Class in org.linqs.psl.util: Various static String utilities.
sub(float) - Method in class org.linqs.psl.util.FloatMatrix: Scalar difference (not in-place).
sub(float, boolean) - Method in class org.linqs.psl.util.FloatMatrix: Scalar difference.
Subtract - Class in org.linqs.psl.model.rule.arithmetic.expression.coefficient
Subtract(Coefficient, Coefficient) - Constructor for class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Subtract
SummationAtom - Class in org.linqs.psl.model.rule.arithmetic.expression: A variant of an Atom that can additionally take SummationVariables as arguments.
SummationAtom(Predicate, SummationVariableOrTerm[]) - Constructor for class org.linqs.psl.model.rule.arithmetic.expression.SummationAtom
SummationAtomOrAtom - Interface in org.linqs.psl.model.rule.arithmetic.expression: Either a SummationAtom or Atom.
summationMapping - Variable in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression
SummationVariable - Class in org.linqs.psl.model.rule.arithmetic.expression: Special argument to a Predicate in an SummationAtom.
SummationVariable(String) - Constructor for class org.linqs.psl.model.rule.arithmetic.expression.SummationVariable
SummationVariableOrTerm - Interface in org.linqs.psl.model.rule.arithmetic.expression: Either a SummationVariable or Term.
supportsBulkCopy() - Method in class org.linqs.psl.database.loading.Inserter: Some inserters backed with specific databases can do bulk copy operations.
supportsBulkCopy() - Method in interface org.linqs.psl.database.rdbms.driver.DatabaseDriver: Returns whether the underline database supports bulk copying operations.
supportsBulkCopy() - Method in class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver
supportsBulkCopy() - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver
supportsBulkCopy() - Method in class org.linqs.psl.database.rdbms.RDBMSInserter
supportsGroundingQueryRewriting() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule
supportsGroundingQueryRewriting() - Method in class org.linqs.psl.model.rule.logical.AbstractLogicalRule
supportsGroundingQueryRewriting() - Method in interface org.linqs.psl.model.rule.Rule: Does this rule support rewriting the grounding formual.
supportsIndividualGrounding() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule
supportsIndividualGrounding() - Method in class org.linqs.psl.model.rule.logical.AbstractLogicalRule
supportsIndividualGrounding() - Method in interface org.linqs.psl.model.rule.Rule: Does this rule support grounding out single instances at a time.
supportsLatentVariables - Variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication
supportsRule(Rule) - Method in class org.linqs.psl.reasoner.dcd.term.DCDStreamingTermStore
supportsRule(Rule) - Method in class org.linqs.psl.reasoner.sgd.term.SGDStreamingTermStore
supportsRule(Rule) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore: Check if this term store supports this rule.
SURVIVAL_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.search.Hyperband
SURVIVAL_KEY - Static variable in class org.linqs.psl.application.learning.weight.search.Hyperband: The proportion of configs that survive each round in a brancket.
syncAtoms() - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore
syncAtoms() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
syncAtoms() - Method in interface org.linqs.psl.reasoner.term.VariableTermStore: Ensure that all the variable atoms have the same value as the array returned by getVariableValues().
SystemUtils - Class in org.linqs.psl.util: Utilities for interfacing with a filesystem.

T

tableName() - Method in class org.linqs.psl.database.rdbms.PredicateInfo
TableStats - Class in org.linqs.psl.database.rdbms: A container for statistics about a table.
TableStats(int) - Constructor for class org.linqs.psl.database.rdbms.TableStats
Term - Interface in org.linqs.psl.model.term: An argument to a Predicate.
TERM_GENERATOR_DEFAULT - Static variable in class org.linqs.psl.application.inference.InferenceApplication
TERM_GENERATOR_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication
TERM_GENERATOR_KEY - Static variable in class org.linqs.psl.application.inference.InferenceApplication: The class to use for term generator.
TERM_GENERATOR_KEY - Static variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication: The class to use for term generator.
TERM_STORE_DEFAULT - Static variable in class org.linqs.psl.application.inference.InferenceApplication
TERM_STORE_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication
TERM_STORE_KEY - Static variable in class org.linqs.psl.application.inference.InferenceApplication: The class to use for term storage.
TERM_STORE_KEY - Static variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication: The class to use for term storage.
termBuffer - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator
termBuffer - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator
termBuffer - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore: The IO buffer for terms.
termCache - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator
termCache - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator
termCache - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore: Terms in the current page.
termCount - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator
termGenerator - Variable in class org.linqs.psl.application.inference.InferenceApplication
termGenerator - Variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication
termGenerator - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator
termGenerator - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
TermGenerator<T extends ReasonerTerm,V extends ReasonerLocalVariable> - Interface in org.linqs.psl.reasoner.term
termPagePaths - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
termPool - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator
termPool - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator
termPool - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore: Terms that we will reuse when we start pulling from the cache.
termStore - Variable in class org.linqs.psl.application.inference.InferenceApplication
termStore - Variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication
TermStore<T extends ReasonerTerm,V extends ReasonerLocalVariable> - Interface in org.linqs.psl.reasoner.term: A place to store terms that are to be optimized.
THRESHOLD_KEY - Static variable in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator: The truth threshold.
THRESHOLD_KEY - Static variable in class org.linqs.psl.evaluation.statistics.RankingEvaluator: The truth threshold.
THROW_ACCESS_EXCEPTION_DEFAULT - Static variable in class org.linqs.psl.database.atom.PersistedAtomManager
THROW_ACCESS_EXCEPTION_KEY - Static variable in class org.linqs.psl.database.atom.PersistedAtomManager: Whether or not to throw an exception on illegal access.
tolerance - Variable in class org.linqs.psl.application.learning.weight.em.ExpectationMaximization
TOLERANCE_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.em.ExpectationMaximization
TOLERANCE_KEY - Static variable in class org.linqs.psl.application.learning.weight.em.ExpectationMaximization: Key for positive double property for the minimum absolute change in weights such that EM is considered converged
toPrimitiveDoubleArray(List<? extends Double>) - Static method in class org.linqs.psl.util.ListUtils
toPrimitiveFloatArray(List<? extends Float>) - Static method in class org.linqs.psl.util.ListUtils
toPrimitiveIntArray(List<? extends Integer>) - Static method in class org.linqs.psl.util.ListUtils
toPrimitiveLongArray(List<? extends Long>) - Static method in class org.linqs.psl.util.ListUtils
toString() - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior.WeightConfig
toString() - Method in class org.linqs.psl.database.Partition
toString() - Method in class org.linqs.psl.database.rdbms.RDBMSResultList
toString() - Method in class org.linqs.psl.database.rdbms.SelectivityHistogram
toString() - Method in class org.linqs.psl.model.atom.Atom
toString() - Method in class org.linqs.psl.model.formula.AbstractBranchFormula
toString() - Method in class org.linqs.psl.model.formula.FormulaAnalysis.DNFClause
toString() - Method in class org.linqs.psl.model.formula.Implication
toString() - Method in class org.linqs.psl.model.formula.Negation
toString() - Method in class org.linqs.psl.model.Model
toString() - Method in class org.linqs.psl.model.predicate.Predicate
toString() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule
toString() - Method in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression
toString() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Add
toString() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Cardinality
toString() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.ConstantNumber
toString() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Divide
toString() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Max
toString() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Min
toString() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Multiply
toString() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Subtract
toString() - Method in class org.linqs.psl.model.rule.arithmetic.expression.SummationAtom
toString() - Method in class org.linqs.psl.model.rule.arithmetic.expression.SummationVariable
toString() - Method in class org.linqs.psl.model.rule.arithmetic.UnweightedArithmeticRule
toString() - Method in class org.linqs.psl.model.rule.arithmetic.UnweightedGroundArithmeticRule
toString() - Method in class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule
toString() - Method in class org.linqs.psl.model.rule.arithmetic.WeightedGroundArithmeticRule
toString() - Method in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule
toString() - Method in class org.linqs.psl.model.rule.logical.UnweightedGroundLogicalRule
toString() - Method in class org.linqs.psl.model.rule.logical.UnweightedLogicalRule
toString() - Method in class org.linqs.psl.model.rule.logical.WeightedGroundLogicalRule
toString() - Method in class org.linqs.psl.model.rule.logical.WeightedLogicalRule
toString() - Method in class org.linqs.psl.model.term.Constant
toString() - Method in interface org.linqs.psl.model.term.Term
toString() - Method in class org.linqs.psl.model.term.Variable
toString() - Method in class org.linqs.psl.reasoner.admm.term.LocalVariable
toString() - Method in class org.linqs.psl.reasoner.dcd.term.DCDObjectiveTerm
toString() - Method in class org.linqs.psl.reasoner.function.ConstraintTerm
toString() - Method in enum org.linqs.psl.reasoner.function.FunctionComparator
toString() - Method in class org.linqs.psl.reasoner.function.GeneralFunction
toString() - Method in class org.linqs.psl.reasoner.sgd.term.SGDObjectiveTerm
toString() - Method in class org.linqs.psl.util.FloatMatrix
toString() - Method in class org.linqs.psl.util.Parallel.RunTimings
toStringWithValue() - Method in class org.linqs.psl.model.atom.GroundAtom
TrainingMap - Class in org.linqs.psl.application.learning.weight: A class that keeps tracks of the mapping between a random variable atom in one database (atom manager) and an observed atom in another (as well as unmapped (latent) variables).
TrainingMap(PersistedAtomManager, Database, boolean) - Constructor for class org.linqs.psl.application.learning.weight.TrainingMap: Initializes the training map of RandomVariableAtoms ObservedAtoms.
trainingMap - Variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication
transpose() - Method in class org.linqs.psl.util.FloatMatrix: Transpose.
TRUNCATE_EVERY_STEP_DEFAULT - Static variable in class org.linqs.psl.reasoner.dcd.DCDReasoner
TRUNCATE_EVERY_STEP_KEY - Static variable in class org.linqs.psl.reasoner.dcd.DCDReasoner

U

UNIFORM_BASE_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.search.grid.ContinuousRandomGridSearch
UNIFORM_BASE_KEY - Static variable in class org.linqs.psl.application.learning.weight.search.grid.ContinuousRandomGridSearch: If true, then use the same base weight as the Gaussian's mean when sampling the weight.
UniqueIntID - Class in org.linqs.psl.model.term
UniqueIntID(int) - Constructor for class org.linqs.psl.model.term.UniqueIntID
UniqueStringID - Class in org.linqs.psl.model.term
UniqueStringID(String) - Constructor for class org.linqs.psl.model.term.UniqueStringID
unitNormal - Variable in class org.linqs.psl.reasoner.admm.term.HyperplaneTerm
UnweightedArithmeticRule - Class in org.linqs.psl.model.rule.arithmetic: A template for UnweightedGroundArithmeticRules.
UnweightedArithmeticRule(ArithmeticRuleExpression) - Constructor for class org.linqs.psl.model.rule.arithmetic.UnweightedArithmeticRule
UnweightedArithmeticRule(ArithmeticRuleExpression, String) - Constructor for class org.linqs.psl.model.rule.arithmetic.UnweightedArithmeticRule
UnweightedArithmeticRule(ArithmeticRuleExpression, Map<SummationVariable, Formula>) - Constructor for class org.linqs.psl.model.rule.arithmetic.UnweightedArithmeticRule
UnweightedArithmeticRule(ArithmeticRuleExpression, Map<SummationVariable, Formula>, String) - Constructor for class org.linqs.psl.model.rule.arithmetic.UnweightedArithmeticRule
UnweightedGroundArithmeticRule - Class in org.linqs.psl.model.rule.arithmetic: An AbstractGroundArithmeticRule that is unweighted, i.e., it is a hard constraint that must always hold.
UnweightedGroundArithmeticRule(UnweightedArithmeticRule, List<Float>, List<GroundAtom>, FunctionComparator, float) - Constructor for class org.linqs.psl.model.rule.arithmetic.UnweightedGroundArithmeticRule
UnweightedGroundArithmeticRule(UnweightedArithmeticRule, float[], GroundAtom[], FunctionComparator, float) - Constructor for class org.linqs.psl.model.rule.arithmetic.UnweightedGroundArithmeticRule
UnweightedGroundLogicalRule - Class in org.linqs.psl.model.rule.logical
UnweightedGroundLogicalRule(UnweightedLogicalRule, List<GroundAtom>, List<GroundAtom>, short) - Constructor for class org.linqs.psl.model.rule.logical.UnweightedGroundLogicalRule
UnweightedGroundRule - Interface in org.linqs.psl.model.rule
UnweightedLogicalRule - Class in org.linqs.psl.model.rule.logical
UnweightedLogicalRule(Formula) - Constructor for class org.linqs.psl.model.rule.logical.UnweightedLogicalRule
UnweightedLogicalRule(Formula, String) - Constructor for class org.linqs.psl.model.rule.logical.UnweightedLogicalRule
UnweightedRule - Interface in org.linqs.psl.model.rule: A template for UnweightedGroundRules, which constrain the values that GroundAtoms can take.
updateDBStats() - Method in interface org.linqs.psl.database.rdbms.driver.DatabaseDriver: Make sure that all the database-level stats are up-to-date.
updateDBStats() - Method in class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver
updateDBStats() - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver
updateLagrange(float, float[]) - Method in class org.linqs.psl.reasoner.admm.term.ADMMObjectiveTerm
updateTableStats(PredicateInfo) - Method in interface org.linqs.psl.database.rdbms.driver.DatabaseDriver: Make sure that all the table statistics are up-to-date.
updateTableStats(PredicateInfo) - Method in class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver
updateTableStats(PredicateInfo) - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver
updateVariables(float[]) - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore: Update the global variables (RVAs).
USE_STRING_ID_DEFAULT - Static variable in class org.linqs.psl.database.rdbms.RDBMSDataStore: Default value for the USE_STRING_ID_KEY property.

V

v - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Cardinality
validate(Formula) - Static method in class org.linqs.psl.database.DatabaseQuery
value - Variable in class org.linqs.psl.model.atom.GroundAtom
value - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.ConstantNumber
VALUE_COLUMN_NAME - Static variable in class org.linqs.psl.database.rdbms.PredicateInfo
valueAndStd - Variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior.WeightConfig
valueOf(String) - Static method in enum org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel.KernelType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel.Space: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.linqs.psl.database.rdbms.driver.H2DatabaseDriver.Type: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.linqs.psl.database.rdbms.QueryRewriter.CostEstimator: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.linqs.psl.evaluation.statistics.CategoricalEvaluator.RepresentativeMetric: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.linqs.psl.evaluation.statistics.ContinuousEvaluator.RepresentativeMetric: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.linqs.psl.evaluation.statistics.DiscreteEvaluator.RepresentativeMetric: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.linqs.psl.evaluation.statistics.RankingEvaluator.RepresentativeMetric: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.linqs.psl.model.term.ConstantType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.linqs.psl.reasoner.admm.ADMMReasoner.InitialValue: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.linqs.psl.reasoner.function.FunctionComparator: Returns the enum constant of this type with the specified name.
values() - Static method in enum org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel.KernelType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel.Space: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.linqs.psl.database.rdbms.driver.H2DatabaseDriver.Type: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.linqs.psl.database.rdbms.QueryRewriter.CostEstimator: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.linqs.psl.evaluation.statistics.CategoricalEvaluator.RepresentativeMetric: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.linqs.psl.evaluation.statistics.ContinuousEvaluator.RepresentativeMetric: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.linqs.psl.evaluation.statistics.DiscreteEvaluator.RepresentativeMetric: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.linqs.psl.evaluation.statistics.RankingEvaluator.RepresentativeMetric: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.linqs.psl.model.term.ConstantType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.linqs.psl.reasoner.admm.ADMMReasoner.InitialValue: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.linqs.psl.reasoner.function.FunctionComparator: Returns an array containing the constants of this enum type, in the order they are declared.
Variable - Class in org.linqs.psl.model.term: A variable Term.
Variable(String) - Constructor for class org.linqs.psl.model.term.Variable: Constructs a Variable, given a name.
variables - Variable in class org.linqs.psl.reasoner.admm.term.ADMMObjectiveTerm
variables - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
VariableTermStore<T extends ReasonerTerm,V extends ReasonerLocalVariable> - Interface in org.linqs.psl.reasoner.term: An interface for term stores that can handle some variable operations.
VariableTypeMap - Class in org.linqs.psl.model.term: A hashed storage class for arguments, keyed on their associated variables.
VariableTypeMap() - Constructor for class org.linqs.psl.model.term.VariableTypeMap
VARIANCE - Static variable in class org.linqs.psl.application.learning.weight.search.Hyperband
VARIANCE_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.search.grid.ContinuousRandomGridSearch
VARIANCE_KEY - Static variable in class org.linqs.psl.application.learning.weight.search.grid.ContinuousRandomGridSearch: The variance used when sampling the weights from a Gaussian.
vars - Variable in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression
Version - Class in org.linqs.psl.util: Get versioning information about the project.
VERSION_DEFAULT - Static variable in class org.linqs.psl.util.Version
VERSION_KEY - Static variable in class org.linqs.psl.util.Version
volatileBuffer - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator
volatileBuffer - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator
volatileBuffer - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore: The IO buffer for volatile values.
volatilePagePaths - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
VotedPerceptron - Class in org.linqs.psl.application.learning.weight: Learns new weights for the weighted rules in a model using the voted perceptron algorithm.
VotedPerceptron(List<Rule>, Database, Database, boolean) - Constructor for class org.linqs.psl.application.learning.weight.VotedPerceptron

W

WARMUP_ROUNDS_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.em.PairedDualLearner
WARMUP_ROUNDS_KEY - Static variable in class org.linqs.psl.application.learning.weight.em.PairedDualLearner: Key for Integer property that indicates how many rounds of paired-dual learning to run before beginning to update the weights (parameter K in the ICML paper)
WARN_RULES_DEFAULT - Static variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
WARN_RULES_KEY - Static variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore: Warn on rules the streaming term store can't handle.
warnRules - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore
weight - Variable in class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule
weight - Variable in class org.linqs.psl.model.rule.logical.WeightedLogicalRule
WeightConfig(float[]) - Constructor for class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior.WeightConfig
WeightConfig(GaussianProcessPrior.WeightConfig) - Constructor for class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior.WeightConfig
WeightConfig(float[], float, float) - Constructor for class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior.WeightConfig
weighted - Variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel
WeightedArithmeticRule - Class in org.linqs.psl.model.rule.arithmetic
WeightedArithmeticRule(ArithmeticRuleExpression, double, boolean) - Constructor for class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule
WeightedArithmeticRule(ArithmeticRuleExpression, double, boolean, String) - Constructor for class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule
WeightedArithmeticRule(ArithmeticRuleExpression, Map<SummationVariable, Formula>, double, boolean) - Constructor for class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule
WeightedArithmeticRule(ArithmeticRuleExpression, Map<SummationVariable, Formula>, double, boolean, String) - Constructor for class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule
WeightedGroundArithmeticRule - Class in org.linqs.psl.model.rule.arithmetic
WeightedGroundArithmeticRule(WeightedArithmeticRule, List<Float>, List<GroundAtom>, FunctionComparator, float) - Constructor for class org.linqs.psl.model.rule.arithmetic.WeightedGroundArithmeticRule
WeightedGroundArithmeticRule(WeightedArithmeticRule, float[], GroundAtom[], FunctionComparator, float) - Constructor for class org.linqs.psl.model.rule.arithmetic.WeightedGroundArithmeticRule
WeightedGroundLogicalRule - Class in org.linqs.psl.model.rule.logical
WeightedGroundLogicalRule(WeightedLogicalRule, List<GroundAtom>, List<GroundAtom>, short) - Constructor for class org.linqs.psl.model.rule.logical.WeightedGroundLogicalRule
WeightedGroundRule - Interface in org.linqs.psl.model.rule
WeightedLogicalRule - Class in org.linqs.psl.model.rule.logical
WeightedLogicalRule(Formula, double, boolean) - Constructor for class org.linqs.psl.model.rule.logical.WeightedLogicalRule
WeightedLogicalRule(Formula, double, boolean, String) - Constructor for class org.linqs.psl.model.rule.logical.WeightedLogicalRule
WeightedRule - Interface in org.linqs.psl.model.rule
WeightLearningApplication - Class in org.linqs.psl.application.learning.weight: Abstract class for learning the weights of weighted mutableRules from data for a model.
WeightLearningApplication(List<Rule>, Database, Database, boolean) - Constructor for class org.linqs.psl.application.learning.weight.WeightLearningApplication
work(int, T) - Method in class org.linqs.psl.util.Parallel.Worker: Do the actual work.
Worker() - Constructor for class org.linqs.psl.util.Parallel.Worker
workerWaitTimeMS - Variable in class org.linqs.psl.util.Parallel.RunTimings
workerWorkTimeMS - Variable in class org.linqs.psl.util.Parallel.RunTimings
WritableDatabase - Interface in org.linqs.psl.database: A database for persisting GroundAtoms.
writeFixedValues(ByteBuffer) - Method in class org.linqs.psl.reasoner.dcd.term.DCDObjectiveTerm: Write a binary representation of the fixed values of this term to a buffer.
writeFixedValues(ByteBuffer) - Method in class org.linqs.psl.reasoner.sgd.term.SGDObjectiveTerm: Write a binary representation of the fixed values of this term to a buffer.
writeFullPage(String, String) - Method in class org.linqs.psl.reasoner.dcd.term.DCDStreamingInitialRoundIterator
writeFullPage(String, String) - Method in class org.linqs.psl.reasoner.sgd.term.SGDStreamingInitialRoundIterator
writeFullPage(String, String) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator: Write a full page (including any volatile page that the child may use).
writeID - Variable in class org.linqs.psl.database.Database
writeModel(BufferedWriter, TermStore) - Method in class org.linqs.psl.reasoner.ExecutableReasoner
writePartition - Variable in class org.linqs.psl.database.Database: The partition ID in which this database writes.
writeVolatilePage(String) - Method in class org.linqs.psl.reasoner.dcd.term.DCDStreamingCacheIterator
writeVolatilePage(String) - Method in class org.linqs.psl.reasoner.sgd.term.SGDStreamingCacheIterator
writeVolatilePage(String) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator: Write a cache page to disk.

Z

ZERO_INITIAL_WEIGHTS_DEFAULT - Static variable in class org.linqs.psl.application.learning.weight.VotedPerceptron
ZERO_INITIAL_WEIGHTS_KEY - Static variable in class org.linqs.psl.application.learning.weight.VotedPerceptron: If true, then start all weights at zero for learning.
zeroes(int, int) - Static method in class org.linqs.psl.util.FloatMatrix: Make a zero matrix.
zeroInitialWeights - Variable in class org.linqs.psl.application.learning.weight.VotedPerceptron

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