A B C D E F G H I J K L M N O P Q R S T U V W Z

A

AbstractArithmeticRule - Class in org.linqs.psl.model.rule.arithmetic

Base class for all (first order, i.e., not ground) arithmetic rules.

AbstractArithmeticRule(ArithmeticRuleExpression, Map<SummationVariable, Formula>, String) - Constructor for class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule

AbstractBranchFormula<T extends AbstractBranchFormula<T>> - Class in org.linqs.psl.model.formula

An abstract branching formula.

AbstractBranchFormula(Formula...) - Constructor for class org.linqs.psl.model.formula.AbstractBranchFormula

AbstractGroundArithmeticRule - Class in org.linqs.psl.model.rule.arithmetic

Base class for all ground arithmetic rules.

AbstractGroundArithmeticRule(AbstractArithmeticRule, List<Float>, List<GroundAtom>, FunctionComparator, float) - Constructor for class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule

AbstractGroundArithmeticRule(AbstractArithmeticRule, float[], GroundAtom[], FunctionComparator, float) - Constructor for class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule

AbstractGroundArithmeticRule(AbstractArithmeticRule, float[], GroundAtom[], FunctionComparator, float, boolean) - Constructor for class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule

AbstractGroundLogicalRule - Class in org.linqs.psl.model.rule.logical

Base class for all ground logical rules.

AbstractGroundLogicalRule(AbstractLogicalRule, List<GroundAtom>, List<GroundAtom>, short) - Constructor for class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule

AbstractLogicalRule - Class in org.linqs.psl.model.rule.logical

Base class for all (first order, i.e., not ground) logical rules.

AbstractLogicalRule(Formula, String) - Constructor for class org.linqs.psl.model.rule.logical.AbstractLogicalRule

AbstractRule - Class in org.linqs.psl.model.rule

Base class for all (first order, i.e., not ground) rules.

AbstractRule(String) - Constructor for class org.linqs.psl.model.rule.AbstractRule

accuracy() - Method in class org.linqs.psl.evaluation.statistics.CategoricalEvaluator

accuracy() - Method in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator

activateAtoms(List<Rule>, GroundRuleStore) - Method in class org.linqs.psl.database.atom.LazyAtomManager

Activate any lazy atoms above the threshold.

activateAtoms(Set<RandomVariableAtom>, List<Rule>, GroundRuleStore) - Method in class org.linqs.psl.database.atom.LazyAtomManager

Activate a specific set of lazy atoms.

activeIterator - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

Add - Class in org.linqs.psl.model.rule.arithmetic.expression.coefficient

Add(Coefficient, Coefficient) - Constructor for class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Add

add(GroundRule, ADMMObjectiveTerm) - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore

add(float) - Method in class org.linqs.psl.reasoner.function.GeneralFunction

Add a constant to the sum.

add(float, FunctionTerm) - Method in class org.linqs.psl.reasoner.function.GeneralFunction

Add a general term to the sum.

add(GroundRule, T) - Method in class org.linqs.psl.reasoner.term.MemoryTermStore

add(GroundRule, T) - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore

add(GroundRule, T) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

add(GroundRule, T) - Method in interface org.linqs.psl.reasoner.term.TermStore

Add a term to the store that was generated from the given ground rule.

add(float) - Method in class org.linqs.psl.util.FloatMatrix

Scalar addition (not in-place).

add(float, boolean) - Method in class org.linqs.psl.util.FloatMatrix

Scalar addition.

addAll(VariableTypeMap) - Method in class org.linqs.psl.model.term.VariableTypeMap

Performs a shallow copy of all variable-type pairs from another VariableTypeMap to this one.

addColumnHistogram(String, SelectivityHistogram) - Method in class org.linqs.psl.database.rdbms.TableStats

addColumnSelectivity(String, double) - Method in class org.linqs.psl.database.rdbms.TableStats

addGroundRule(GroundRule) - Method in interface org.linqs.psl.grounding.GroundRuleStore

Adds a GroundRule to this store.

addGroundRule(GroundRule) - Method in class org.linqs.psl.grounding.MemoryGroundRuleStore

addHistogramBounds(List<T>, List<? extends Number>) - Method in class org.linqs.psl.database.rdbms.SelectivityHistogram

addHistogramExact(Map<T, ? extends Number>) - Method in class org.linqs.psl.database.rdbms.SelectivityHistogram

addProperty(String, Object) - Static method in class org.linqs.psl.config.Config

Add a property to the configuration.

addResult(Constant[]) - Method in class org.linqs.psl.database.rdbms.RDBMSResultList

addRule(Rule) - Method in class org.linqs.psl.model.Model

Adds a Rule to this Model.

addTerm(E, float) - Method in class org.linqs.psl.reasoner.term.Hyperplane

addToPersistedCache(Set<RandomVariableAtom>) - Method in class org.linqs.psl.database.atom.PersistedAtomManager

addVariable(Variable, ConstantType) - Method in class org.linqs.psl.model.term.VariableTypeMap

addVariable(Variable, ConstantType, boolean) - Method in class org.linqs.psl.model.term.VariableTypeMap

Adds a variable-type pair to the hashmap.

ADMM_COMPUTE_PERIOD - Static variable in class org.linqs.psl.config.Options

ADMM_EPSILON_ABS - Static variable in class org.linqs.psl.config.Options

ADMM_EPSILON_REL - Static variable in class org.linqs.psl.config.Options

ADMM_MAX_ITER - Static variable in class org.linqs.psl.config.Options

ADMM_STEP_SIZE - Static variable in class org.linqs.psl.config.Options

ADMMInference - Class in org.linqs.psl.application.inference.mpe

Use an ADMM reasoner to perform MPE inference.

ADMMInference(List<Rule>, Database) - Constructor for class org.linqs.psl.application.inference.mpe.ADMMInference

ADMMObjectiveTerm - Class in org.linqs.psl.reasoner.admm.term

A term in the objective to be optimized by an ADMMReasoner.

ADMMObjectiveTerm(Hyperplane<LocalVariable>, GroundRule) - Constructor for class org.linqs.psl.reasoner.admm.term.ADMMObjectiveTerm

Caller releases control of the hyperplane and all members of it.

ADMMReasoner - Class in org.linqs.psl.reasoner.admm

Uses an ADMM optimization method to optimize its GroundRules.

ADMMReasoner() - Constructor for class org.linqs.psl.reasoner.admm.ADMMReasoner

ADMMTermGenerator - Class in org.linqs.psl.reasoner.admm.term

A TermGenerator for ADMM objective terms.

ADMMTermGenerator() - Constructor for class org.linqs.psl.reasoner.admm.term.ADMMTermGenerator

ADMMTermStore - Class in org.linqs.psl.reasoner.admm.term

A TermStore specifically for ADMM terms.

ADMMTermStore() - Constructor for class org.linqs.psl.reasoner.admm.term.ADMMTermStore

ADMMTermStore(TermStore<ADMMObjectiveTerm, ?>) - Constructor for class org.linqs.psl.reasoner.admm.term.ADMMTermStore

allPartitionIDs - Variable in class org.linqs.psl.database.Database

allRules - Variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication

ANONYMOUS_PARTITION_PREFIX - Static variable in class org.linqs.psl.database.rdbms.DataStoreMetadata

appendCoefficient(int, float) - Method in class org.linqs.psl.reasoner.term.Hyperplane

args - Variable in class org.linqs.psl.model.rule.arithmetic.expression.SummationAtom

args - Variable in class org.linqs.psl.reasoner.ExecutableReasoner

argumentColumns() - Method in class org.linqs.psl.database.rdbms.PredicateInfo

arguments - Variable in class org.linqs.psl.model.atom.Atom

ArithmeticRuleExpression - Class in org.linqs.psl.model.rule.arithmetic.expression

Container for components of an arithmetic rule formula.

ArithmeticRuleExpression(List<Coefficient>, List<SummationAtomOrAtom>, FunctionComparator, Coefficient) - Constructor for class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression

ArithmeticRuleExpression(List<Coefficient>, List<SummationAtomOrAtom>, FunctionComparator, Coefficient, boolean) - Constructor for class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression

ArrayUtils - Class in org.linqs.psl.util

Various static array utilities.

asColumnArray() - Method in class org.linqs.psl.util.FloatMatrix

Get a copy of this matrix's data as a 1D column-major array.

asGrid() - Method in class org.linqs.psl.util.FloatMatrix

Get a copy of this matrix's data as a 2D-array.

asRowArray() - Method in class org.linqs.psl.util.FloatMatrix

Get a copy of this matrix's data as a 1D row-major array.

asString() - Static method in class org.linqs.psl.config.Config

asString() - Method in class org.linqs.psl.model.Model

Create a model string that can be directly interpreted by the parser.

assume(Predicate, Term...) - Method in class org.linqs.psl.model.atom.QueryAtom

Have this QueryAtom assume new values.

assume(float[], int, int) - Method in class org.linqs.psl.util.FloatMatrix

Take on all the given information.

atom - Variable in exception org.linqs.psl.database.atom.PersistedAtomManager.PersistedAccessException

Atom - Class in org.linqs.psl.model.atom

A Predicate combined with the correct number of Terms as arguments.

Atom(Predicate, Term[]) - Constructor for class org.linqs.psl.model.atom.Atom

Type mismatches will throw an exception unless the types are trivially convertable like UniqueIntID and IntegerAttribute.

AtomCache - Class in org.linqs.psl.database.atom

Storage for GroundAtoms so that a Database always returns the same object for a GroundAtom.

AtomCache(Database) - Constructor for class org.linqs.psl.database.atom.AtomCache

Constructs a new AtomCache for a Database.

AtomIndexes(int, int) - Constructor for class org.linqs.psl.model.predicate.model.SupportingModel.AtomIndexes

atomManager - Variable in class org.linqs.psl.application.inference.InferenceApplication

AtomManager - Class in org.linqs.psl.database.atom

Provides centralization and hooks for managing the GroundAtoms that are instantiated from a Database.

AtomManager(Database) - Constructor for class org.linqs.psl.database.atom.AtomManager

atomManager - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator

atomManager - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

atoms - Variable in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule

atoms - Variable in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression

Attribute - Class in org.linqs.psl.model.term

A Constant that is a value, as opposed to a unique identifier.

Attribute() - Constructor for class org.linqs.psl.model.term.Attribute

auroc() - Method in class org.linqs.psl.evaluation.statistics.RankingEvaluator

Returns area under ROC curve.

averageSteps - Variable in class org.linqs.psl.application.learning.weight.VotedPerceptron

B

BaseGridSearch - Class in org.linqs.psl.application.learning.weight.search.grid

The base for grid search-like method.

BaseGridSearch(Model, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.BaseGridSearch

BaseGridSearch(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.BaseGridSearch

baseStepSize - Variable in class org.linqs.psl.application.learning.weight.VotedPerceptron

baseToString() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule

baseToString() - Method in interface org.linqs.psl.model.rule.GroundRule

Get a to string for the base of the rule without weight or square.

baseToString() - Method in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule

blas_sdot(FloatMatrix) - Method in class org.linqs.psl.util.FloatMatrix

Call sdot from BLAS.

blas_sgemm(FloatMatrix, FloatMatrix, boolean, boolean, float, float) - Method in class org.linqs.psl.util.FloatMatrix

Call sgemm from BLAS.

body - Variable in class org.linqs.psl.model.formula.Implication

The fuzzy singletons that constitute the body of the rule

BOOLEAN_MAXWALKSAT_MAX_FLIPS - Static variable in class org.linqs.psl.config.Options

BOOLEAN_MAXWALKSAT_NOISE - Static variable in class org.linqs.psl.config.Options

BOOLEAN_MCSAT_NUM_BURNIN - Static variable in class org.linqs.psl.config.Options

BOOLEAN_MCSAT_NUM_SAMPLES - Static variable in class org.linqs.psl.config.Options

BUCKET_USAGE_GUESS - Static variable in class org.linqs.psl.database.rdbms.SelectivityHistogram

A guess about how much of a bucket is in use when there is some overlap.

budget - Variable in class org.linqs.psl.reasoner.Reasoner

build(Object) - Static method in class org.linqs.psl.util.HashCode

build(int, Object) - Static method in class org.linqs.psl.util.HashCode

build(int, int, Object) - Static method in class org.linqs.psl.util.HashCode

build(Object[]) - Static method in class org.linqs.psl.util.HashCode

build(int, Object[]) - Static method in class org.linqs.psl.util.HashCode

build(int, int, Object[]) - Static method in class org.linqs.psl.util.HashCode

bulkCopy(String, String, boolean) - Method in class org.linqs.psl.database.loading.Inserter

Import the file directly into the database.

bulkCopy(String, String, boolean, PredicateInfo, Partition) - Method in interface org.linqs.psl.database.rdbms.driver.DatabaseDriver

Perform a bulk copy operation to load the file directly into the database.

bulkCopy(String, String, boolean, PredicateInfo, Partition) - Method in class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver

bulkCopy(String, String, boolean, PredicateInfo, Partition) - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver

bulkCopy(String, String, boolean) - Method in class org.linqs.psl.database.rdbms.RDBMSInserter

bytesToHex(byte[]) - Static method in class org.linqs.psl.util.Hash

C

c1 - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Add

c1 - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Divide

c1 - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Max

c1 - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Min

c1 - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Multiply

c1 - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Subtract

c2 - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Add

c2 - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Divide

c2 - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Max

c2 - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Min

c2 - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Multiply

c2 - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Subtract

cache - Variable in class org.linqs.psl.database.atom.AtomCache

cache - Variable in class org.linqs.psl.database.Database

The atom cache for this database.

cacheIterationComplete() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

A callback for the non-initial round iterator.

callReasoner() - Method in class org.linqs.psl.reasoner.ExecutableReasoner

Cardinality - Class in org.linqs.psl.model.rule.arithmetic.expression.coefficient

The number of substitutions made for a SummationVariable in a grounding.

Cardinality(SummationVariable) - Constructor for class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Cardinality

CategoricalEvaluator - Class in org.linqs.psl.evaluation.statistics

Compute various statistics on data known to be categorical.

CategoricalEvaluator() - Constructor for class org.linqs.psl.evaluation.statistics.CategoricalEvaluator

CategoricalEvaluator(int...) - Constructor for class org.linqs.psl.evaluation.statistics.CategoricalEvaluator

CategoricalEvaluator(String, int...) - Constructor for class org.linqs.psl.evaluation.statistics.CategoricalEvaluator

CategoricalEvaluator(CategoricalEvaluator.RepresentativeMetric, int...) - Constructor for class org.linqs.psl.evaluation.statistics.CategoricalEvaluator

CategoricalEvaluator.RepresentativeMetric - Enum in org.linqs.psl.evaluation.statistics

checkSchema() - Method in class org.linqs.psl.model.rule.arithmetic.expression.SummationAtom

Verifies that this atom has valid arguments.

choleskyDecomposition() - Method in class org.linqs.psl.util.FloatMatrix

Cholesky factorization (not in-place).

choleskyDecomposition(boolean) - Method in class org.linqs.psl.util.FloatMatrix

Compute the Cholesky factorization of this real symmetric positive definite matrix.

chooseNextLocation() - Method in class org.linqs.psl.application.learning.weight.search.grid.BaseGridSearch

Choose the next location we will search.

chooseNextLocation() - Method in class org.linqs.psl.application.learning.weight.search.grid.ContinuousRandomGridSearch

chooseNextLocation() - Method in class org.linqs.psl.application.learning.weight.search.grid.GridSearch

chooseNextLocation() - Method in class org.linqs.psl.application.learning.weight.search.grid.GuidedRandomGridSearch

chooseNextLocation() - Method in class org.linqs.psl.application.learning.weight.search.grid.RandomGridSearch

chooseNextLocation() - Method in class org.linqs.psl.application.learning.weight.search.grid.RankSearch

CLASS_LIST_KEY - Static variable in class org.linqs.psl.config.Config

CLASS_LIST_PROPS - Static variable in class org.linqs.psl.config.Config

cleanupInput - Variable in class org.linqs.psl.reasoner.ExecutableReasoner

cleanupOutput - Variable in class org.linqs.psl.reasoner.ExecutableReasoner

clear() - Static method in class org.linqs.psl.config.Config

Remove all properties from the configuration.

clear() - Method in class org.linqs.psl.model.Model

clear() - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore

clear() - Method in class org.linqs.psl.reasoner.term.MemoryTermStore

clear() - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore

clear() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

clear() - Method in interface org.linqs.psl.reasoner.term.TermStore

Remove any existing terms and prepare for a new set.

clearException() - Method in class org.linqs.psl.util.Parallel.Worker

clearForTesting() - Static method in class org.linqs.psl.model.predicate.Predicate

Clear out all active predicates.

clearProperty(String) - Static method in class org.linqs.psl.config.Config

Remove a property from the configuration.

clipNegativeWeights - Variable in class org.linqs.psl.application.learning.weight.VotedPerceptron

close() - Method in class org.linqs.psl.application.inference.InferenceApplication

close() - Method in class org.linqs.psl.application.inference.mpe.DCDStreamingInference

close() - Method in class org.linqs.psl.application.inference.mpe.SGDStreamingInference

close() - Method in class org.linqs.psl.application.learning.weight.search.grid.InitialWeightGridSearch

close() - Method in class org.linqs.psl.application.learning.weight.search.grid.InitialWeightRandomGridSearch

close() - Method in class org.linqs.psl.application.learning.weight.search.grid.InitialWeightRankSearch

close() - Method in class org.linqs.psl.application.learning.weight.search.InitialWeightHyperband

close() - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication

close() - Method in interface org.linqs.psl.application.ModelApplication

Releases all resources used by this ModelApplication.

close() - Method in interface org.linqs.psl.database.DataStore

Releases all resources and locks obtained by this DataStore.

close() - Method in interface org.linqs.psl.database.QueryResultIterable

Close the associated iterator and any open queries.

close() - Method in interface org.linqs.psl.database.rdbms.driver.DatabaseDriver

Close out any outstanding connections and cleanup.

close() - Method in class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver

close() - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver

close() - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase

close() - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore

close() - Method in class org.linqs.psl.database.rdbms.RDBMSResultList

close() - Method in interface org.linqs.psl.database.WritableDatabase

Releases the Partitions used by this Database.

close() - Method in interface org.linqs.psl.grounding.GroundRuleStore

Release any memory held by the store.

close() - Method in class org.linqs.psl.grounding.MemoryGroundRuleStore

close() - Method in class org.linqs.psl.reasoner.admm.ADMMReasoner

close() - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore

close() - Method in class org.linqs.psl.reasoner.dcd.DCDReasoner

close() - Method in class org.linqs.psl.reasoner.ExecutableReasoner

close() - Method in class org.linqs.psl.reasoner.Reasoner

Releases all resources acquired by this Reasoner.

close() - Method in class org.linqs.psl.reasoner.sgd.SGDReasoner

close() - Method in class org.linqs.psl.reasoner.term.MemoryTermStore

close() - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore

close() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator

close() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator

close() - Method in interface org.linqs.psl.reasoner.term.streaming.StreamingIterator

close() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

close() - Method in interface org.linqs.psl.reasoner.term.TermStore

Close down the term store, it will not be used any more.

close() - Method in class org.linqs.psl.util.Parallel.Worker

Cleanup anything.

closed - Variable in class org.linqs.psl.database.Database

Keeps track of the open / closed status of this database.

closed - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator

closed - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator

Coefficient - Class in org.linqs.psl.model.rule.arithmetic.expression.coefficient

Numeric coefficient in a ArithmeticRuleExpression.

Coefficient() - Constructor for class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Coefficient

coefficients - Variable in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule

coefficients - Variable in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression

coefficients - Variable in class org.linqs.psl.reasoner.admm.term.HyperplaneTerm

coefficients - Variable in class org.linqs.psl.reasoner.admm.term.SquaredHyperplaneTerm

collect() - Static method in class org.linqs.psl.util.RuntimeStats

Begin the process of collecting stats.

collectVariables(VariableTypeMap) - Method in class org.linqs.psl.model.atom.GroundAtom

collectVariables(VariableTypeMap) - Method in class org.linqs.psl.model.atom.QueryAtom

collectVariables(VariableTypeMap) - Method in class org.linqs.psl.model.formula.AbstractBranchFormula

collectVariables(VariableTypeMap) - Method in interface org.linqs.psl.model.formula.Formula

Adds the Variables

collectVariables(VariableTypeMap) - Method in class org.linqs.psl.model.formula.Implication

collectVariables(VariableTypeMap) - Method in class org.linqs.psl.model.formula.Negation

columnVector(float[]) - Static method in class org.linqs.psl.util.FloatMatrix

columnVector(float[], boolean) - Static method in class org.linqs.psl.util.FloatMatrix

commit() - Method in class org.linqs.psl.application.inference.InferenceApplication

Commit the results of inference to the database.

commit(RandomVariableAtom) - Method in class org.linqs.psl.database.Database

commit(Iterable<RandomVariableAtom>) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase

commit(Iterable<RandomVariableAtom>, int) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase

commit(RandomVariableAtom) - Method in interface org.linqs.psl.database.WritableDatabase

Persists a RandomVariableAtom in this Database's write Partition.

commit(Iterable<RandomVariableAtom>) - Method in interface org.linqs.psl.database.WritableDatabase

A batch form or commit().

commit(Iterable<RandomVariableAtom>, int) - Method in interface org.linqs.psl.database.WritableDatabase

A form of commit() that allows the caller to choose the specific partition the atoms are comitted to.

commitCachedAtoms() - Method in class org.linqs.psl.database.Database

commitCachedAtoms(boolean) - Method in class org.linqs.psl.database.Database

commitCachedAtoms() - Method in interface org.linqs.psl.database.WritableDatabase

Commit all RandomVariableAtoms in the database's cache.

commitCachedAtoms(boolean) - Method in interface org.linqs.psl.database.WritableDatabase

Commit all RandomVariableAtoms in the database's cache.

commitPersistedAtoms() - Method in class org.linqs.psl.database.atom.PersistedAtomManager

Commit all the atoms in this manager's persisted cache.

comparator - Variable in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule

comparator - Variable in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression

compare(double, double) - Static method in class org.linqs.psl.util.MathUtils

compare(double, double, double) - Static method in class org.linqs.psl.util.MathUtils

A comparison method with the Comparator integer return semantics.

compare(float, float) - Static method in class org.linqs.psl.util.MathUtils

compare(float, float, float) - Static method in class org.linqs.psl.util.MathUtils

A comparison method with the Comparator integer return semantics.

compareTo(GroundAtom) - Method in class org.linqs.psl.model.atom.GroundAtom

First order by value (descending), the predicate name (natural), and then the arguments (in order).

compareTo(Term) - Method in class org.linqs.psl.model.term.DoubleAttribute

compareTo(Term) - Method in class org.linqs.psl.model.term.IntegerAttribute

compareTo(Term) - Method in class org.linqs.psl.model.term.LongAttribute

compareTo(Term) - Method in class org.linqs.psl.model.term.StringAttribute

compareTo(Term) - Method in class org.linqs.psl.model.term.UniqueIntID

compareTo(Term) - Method in class org.linqs.psl.model.term.UniqueStringID

compareTo(Term) - Method in class org.linqs.psl.model.term.Variable

Just use the name for comparison.

completeInitialize() - Method in class org.linqs.psl.application.inference.InferenceApplication

Complete the initialization process.

completeInitialize() - Method in class org.linqs.psl.application.inference.mpe.DCDStreamingInference

completeInitialize() - Method in class org.linqs.psl.application.inference.mpe.LazyMPEInference

completeInitialize() - Method in class org.linqs.psl.application.inference.mpe.SGDStreamingInference

compute(TrainingMap) - Method in class org.linqs.psl.evaluation.statistics.CategoricalEvaluator

compute(TrainingMap, StandardPredicate) - Method in class org.linqs.psl.evaluation.statistics.CategoricalEvaluator

compute(TrainingMap) - Method in class org.linqs.psl.evaluation.statistics.ContinuousEvaluator

compute(TrainingMap, StandardPredicate) - Method in class org.linqs.psl.evaluation.statistics.ContinuousEvaluator

compute(TrainingMap) - Method in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator

compute(TrainingMap, StandardPredicate) - Method in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator

compute(TrainingMap) - Method in class org.linqs.psl.evaluation.statistics.Evaluator

One of the main computation method.

compute(TrainingMap, StandardPredicate) - Method in class org.linqs.psl.evaluation.statistics.Evaluator

One of the main computation method.

compute(Database, Database, StandardPredicate, boolean) - Method in class org.linqs.psl.evaluation.statistics.Evaluator

A convenience call for those who don't want to create a training map directly.

compute(Database, Database, StandardPredicate) - Method in class org.linqs.psl.evaluation.statistics.Evaluator

compute(TrainingMap) - Method in class org.linqs.psl.evaluation.statistics.RankingEvaluator

compute(TrainingMap, StandardPredicate) - Method in class org.linqs.psl.evaluation.statistics.RankingEvaluator

compute(String, String) - Static method in class org.linqs.psl.util.Hash

compute(byte[], String) - Static method in class org.linqs.psl.util.Hash

computeExpectedIncompatibility() - Method in class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPiecewisePseudoLikelihood

Compute the expected incompatibility using the piecewisepseudolikelihood.

computeExpectedIncompatibility() - Method in class org.linqs.psl.application.learning.weight.VotedPerceptron

Compute the incompatibility in the model.

computeLoss() - Method in class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPiecewisePseudoLikelihood

computeLoss() - Method in class org.linqs.psl.application.learning.weight.VotedPerceptron

Internal method for computing the loss at the current point before taking a step.

computeMPEState() - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication

Run inference.

computeObjective(VariableTermStore<SGDObjectiveTerm, RandomVariableAtom>) - Method in class org.linqs.psl.reasoner.sgd.SGDReasoner

computeObservedIncompatibility() - Method in class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPiecewisePseudoLikelihood

computeObservedIncompatibility() - Method in class org.linqs.psl.application.learning.weight.VotedPerceptron

Compute the incompatibility in the model using the labels (truth values) from the observed (truth) database.

computeRegularizer() - Method in class org.linqs.psl.application.learning.weight.VotedPerceptron

computeScalingFactor() - Method in class org.linqs.psl.application.learning.weight.VotedPerceptron

Computes the amount to scale gradient for each rule.

computeValue(ReadableDatabase, Constant...) - Method in class org.linqs.psl.model.predicate.ExternalFunctionalPredicate

computeValue(ReadableDatabase, Constant...) - Method in class org.linqs.psl.model.predicate.FunctionalPredicate

Computes the truth value of this Predicate with the given arguments.

config - Variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior.WeightConfig

Config - Class in org.linqs.psl.config

The storage for all configuration values used in PSL.

Config() - Constructor for class org.linqs.psl.config.Config

CONFIG_FEATURES - Static variable in class org.linqs.psl.model.predicate.model.SupportingModel

CONFIG_LABELS - Static variable in class org.linqs.psl.model.predicate.model.SupportingModel

CONFIG_MODEL - Static variable in class org.linqs.psl.model.predicate.model.SupportingModel

Conjunction - Class in org.linqs.psl.model.formula

Conjunction(Formula...) - Constructor for class org.linqs.psl.model.formula.Conjunction

constant - Variable in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule

constant - Variable in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression

Constant - Class in org.linqs.psl.model.term

An element in the universe over which a PSL program is grounded.

Constant() - Constructor for class org.linqs.psl.model.term.Constant

constant - Variable in class org.linqs.psl.reasoner.admm.term.HyperplaneTerm

constant - Variable in class org.linqs.psl.reasoner.admm.term.SquaredHyperplaneTerm

ConstantNumber - Class in org.linqs.psl.model.rule.arithmetic.expression.coefficient

ConstantNumber(float) - Constructor for class org.linqs.psl.model.rule.arithmetic.expression.coefficient.ConstantNumber

ConstantType - Enum in org.linqs.psl.model.term

A type of Constant.

ConstraintTerm - Class in org.linqs.psl.reasoner.function

A numeric constraint.

ConstraintTerm(GeneralFunction, FunctionComparator, float) - Constructor for class org.linqs.psl.reasoner.function.ConstraintTerm

containsGroundRule(GroundRule) - Method in interface org.linqs.psl.grounding.GroundRuleStore

Checks whether a GroundRule is in this store.

containsGroundRule(GroundRule) - Method in class org.linqs.psl.grounding.MemoryGroundRuleStore

O(n) check for a ground rule.

ContinuousEvaluator - Class in org.linqs.psl.evaluation.statistics

Compute various continuous statistics using a threshold.

ContinuousEvaluator() - Constructor for class org.linqs.psl.evaluation.statistics.ContinuousEvaluator

ContinuousEvaluator(String) - Constructor for class org.linqs.psl.evaluation.statistics.ContinuousEvaluator

ContinuousEvaluator(ContinuousEvaluator.RepresentativeMetric) - Constructor for class org.linqs.psl.evaluation.statistics.ContinuousEvaluator

ContinuousEvaluator.RepresentativeMetric - Enum in org.linqs.psl.evaluation.statistics

ContinuousRandomGridSearch - Class in org.linqs.psl.application.learning.weight.search.grid

A grid search that just randomly samples from a continuous grid [0, 1).

ContinuousRandomGridSearch(Model, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.ContinuousRandomGridSearch

ContinuousRandomGridSearch(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.ContinuousRandomGridSearch

convertAtomToVariable(RandomVariableAtom) - Method in class org.linqs.psl.reasoner.dcd.term.DCDMemoryTermStore

convertAtomToVariable(RandomVariableAtom) - Method in class org.linqs.psl.reasoner.sgd.term.SGDMemoryTermStore

convertAtomToVariable(RandomVariableAtom) - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore

copy() - Method in class org.linqs.psl.util.FloatMatrix

Get a copy of this matrix.

copy() - Method in class org.linqs.psl.util.Parallel.Worker

Make a deep copy of this worker.

count(Rule) - Method in interface org.linqs.psl.grounding.GroundRuleStore

count(Rule) - Method in class org.linqs.psl.grounding.MemoryGroundRuleStore

O(n).

count(int) - Static method in class org.linqs.psl.util.IteratorUtils

count(int, int) - Static method in class org.linqs.psl.util.IteratorUtils

count(int, int, int, Parallel.Worker<Integer>) - Static method in class org.linqs.psl.util.Parallel

Count and call a worker with each number in [start, end).

count(int, int, Parallel.Worker<Integer>) - Static method in class org.linqs.psl.util.Parallel

Convenience count() that increments by 1.

count(int, Parallel.Worker<Integer>) - Static method in class org.linqs.psl.util.Parallel

Convenience count() that starts at 0 and increments by 1.

countActivatableAtoms() - Method in class org.linqs.psl.database.atom.LazyAtomManager

Compute the number of lazy atoms that can be activated at this moment.

countAllGroundAtoms(StandardPredicate) - Method in class org.linqs.psl.database.Database

countAllGroundAtoms(StandardPredicate, List<Integer>) - Method in class org.linqs.psl.database.Database

countAllGroundAtoms(StandardPredicate, List<Integer>) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase

countAllGroundAtoms(StandardPredicate) - Method in interface org.linqs.psl.database.ReadableDatabase

Get a count of all the ground atoms for a predicate.

countAllGroundRandomVariableAtoms(StandardPredicate) - Method in class org.linqs.psl.database.Database

countAllGroundRandomVariableAtoms(StandardPredicate) - Method in interface org.linqs.psl.database.ReadableDatabase

Get a count of all the ground RandomVariableAtoms for a predicate.

createAtomManager(Database) - Method in class org.linqs.psl.application.inference.InferenceApplication

createAtomManager(Database) - Method in class org.linqs.psl.application.inference.mpe.LazyMPEInference

createCountAllStatement(Connection, List<Integer>) - Method in class org.linqs.psl.database.rdbms.PredicateInfo

Create a prepared statement to count all the ground atoms for this predicate (within the specified partitions).

createDeleteStatement(Connection, int) - Method in class org.linqs.psl.database.rdbms.PredicateInfo

Create a prepared statement that deletes ground atoms that match all the arguments.

createGroundRuleStore() - Method in class org.linqs.psl.application.inference.InferenceApplication

createGroundRuleStore() - Method in class org.linqs.psl.application.inference.mpe.ADMMInference

createGroundRuleStore() - Method in class org.linqs.psl.application.inference.mpe.DCDInference

createGroundRuleStore() - Method in class org.linqs.psl.application.inference.mpe.DCDStreamingInference

createGroundRuleStore() - Method in class org.linqs.psl.application.inference.mpe.SGDInference

createGroundRuleStore() - Method in class org.linqs.psl.application.inference.mpe.SGDStreamingInference

createLinearConstraintTerm(TermStore<ADMMObjectiveTerm, LocalVariable>, GroundRule, Hyperplane<LocalVariable>, FunctionComparator) - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermGenerator

createLinearConstraintTerm(TermStore<DCDObjectiveTerm, RandomVariableAtom>, GroundRule, Hyperplane<RandomVariableAtom>, FunctionComparator) - Method in class org.linqs.psl.reasoner.dcd.term.DCDTermGenerator

createLinearConstraintTerm(TermStore<SGDObjectiveTerm, RandomVariableAtom>, GroundRule, Hyperplane<RandomVariableAtom>, FunctionComparator) - Method in class org.linqs.psl.reasoner.sgd.term.SGDTermGenerator

createLinearConstraintTerm(TermStore<T, V>, GroundRule, Hyperplane<V>, FunctionComparator) - Method in class org.linqs.psl.reasoner.term.HyperplaneTermGenerator

Create a hard constraint term,

createLocalVariable(RandomVariableAtom) - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore

Create a local variable and ensure that a global copy is registered.

createLocalVariable(RandomVariableAtom) - Method in class org.linqs.psl.reasoner.term.MemoryTermStore

createLocalVariable(RandomVariableAtom) - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore

createLocalVariable(RandomVariableAtom) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

createLocalVariable(RandomVariableAtom) - Method in interface org.linqs.psl.reasoner.term.TermStore

Create a variable local to a specific term.

createLossTerm(TermStore<ADMMObjectiveTerm, LocalVariable>, boolean, boolean, GroundRule, Hyperplane<LocalVariable>) - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermGenerator

createLossTerm(TermStore<DCDObjectiveTerm, RandomVariableAtom>, boolean, boolean, GroundRule, Hyperplane<RandomVariableAtom>) - Method in class org.linqs.psl.reasoner.dcd.term.DCDTermGenerator

createLossTerm(TermStore<SGDObjectiveTerm, RandomVariableAtom>, boolean, boolean, GroundRule, Hyperplane<RandomVariableAtom>) - Method in class org.linqs.psl.reasoner.sgd.term.SGDTermGenerator

createLossTerm(TermStore<T, V>, boolean, boolean, GroundRule, Hyperplane<V>) - Method in class org.linqs.psl.reasoner.term.HyperplaneTermGenerator

Create a term from a ground rule and hyperplane.

createPartitionMoveStatement(Connection, int, int) - Method in class org.linqs.psl.database.rdbms.PredicateInfo

Create a prepared statement that changes moves atoms from one partition to another.

createQueryAllStatement(Connection, List<Integer>) - Method in class org.linqs.psl.database.rdbms.PredicateInfo

Create a prepared statement to query all the atoms for this predicate (within the specified partitions).

createQueryAllWriteStatement(Connection, int) - Method in class org.linqs.psl.database.rdbms.PredicateInfo

Create a prepared statement that queries for all random variable atoms (atoms in the write partition) of this predicate.

createQueryStatement(Connection, List<Integer>) - Method in class org.linqs.psl.database.rdbms.PredicateInfo

Create a prepared statement that queries for one specific atom.

createReasoner() - Method in class org.linqs.psl.application.inference.InferenceApplication

createReasoner() - Method in class org.linqs.psl.application.inference.mpe.ADMMInference

createReasoner() - Method in class org.linqs.psl.application.inference.mpe.DCDInference

createReasoner() - Method in class org.linqs.psl.application.inference.mpe.DCDStreamingInference

createReasoner() - Method in class org.linqs.psl.application.inference.mpe.SGDInference

createReasoner() - Method in class org.linqs.psl.application.inference.mpe.SGDStreamingInference

createTerm(GroundRule, TermStore<T, V>) - Method in class org.linqs.psl.reasoner.term.HyperplaneTermGenerator

Create a ReasonerTerm from the ground rule.

createTermGenerator() - Method in class org.linqs.psl.application.inference.InferenceApplication

createTermGenerator() - Method in class org.linqs.psl.application.inference.mpe.ADMMInference

createTermGenerator() - Method in class org.linqs.psl.application.inference.mpe.DCDInference

createTermGenerator() - Method in class org.linqs.psl.application.inference.mpe.DCDStreamingInference

createTermGenerator() - Method in class org.linqs.psl.application.inference.mpe.SGDInference

createTermGenerator() - Method in class org.linqs.psl.application.inference.mpe.SGDStreamingInference

createTermStore() - Method in class org.linqs.psl.application.inference.InferenceApplication

createTermStore() - Method in class org.linqs.psl.application.inference.mpe.ADMMInference

createTermStore() - Method in class org.linqs.psl.application.inference.mpe.DCDInference

createTermStore() - Method in class org.linqs.psl.application.inference.mpe.DCDStreamingInference

createTermStore() - Method in class org.linqs.psl.application.inference.mpe.SGDInference

createTermStore() - Method in class org.linqs.psl.application.inference.mpe.SGDStreamingInference

createUpsertStatement(Connection, DatabaseDriver) - Method in class org.linqs.psl.database.rdbms.PredicateInfo

Create a prepared statement that upserts.

currentLocation - Variable in class org.linqs.psl.application.learning.weight.search.grid.BaseGridSearch

The current location we are investigating.

currentPage - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator

currentRule - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator

cutObjective - Variable in class org.linqs.psl.application.learning.weight.VotedPerceptron

D

Database - Class in org.linqs.psl.database

A data model for retrieving and persisting GroundAtoms.

Database(DataStore, Partition, Partition[]) - Constructor for class org.linqs.psl.database.Database

DatabaseDriver - Interface in org.linqs.psl.database.rdbms.driver

An interface to a specific RDBMS backend.

DatabaseQuery - Class in org.linqs.psl.database

A query to select groundings from a Database.

DatabaseQuery(Formula) - Constructor for class org.linqs.psl.database.DatabaseQuery

DatabaseQuery(Formula, boolean) - Constructor for class org.linqs.psl.database.DatabaseQuery

DatabaseQuery(Formula, boolean, Set<Variable>) - Constructor for class org.linqs.psl.database.DatabaseQuery

DataStore - Interface in org.linqs.psl.database

Makes GroundAtoms available via Databases.

DataStoreMetadata - Class in org.linqs.psl.database.rdbms

DataStoreMetadata(RDBMSDataStore) - Constructor for class org.linqs.psl.database.rdbms.DataStoreMetadata

db - Variable in class org.linqs.psl.application.inference.InferenceApplication

db - Variable in class org.linqs.psl.database.atom.AtomCache

db - Variable in class org.linqs.psl.database.atom.AtomManager

DCD_C - Static variable in class org.linqs.psl.config.Options

DCD_MAX_ITER - Static variable in class org.linqs.psl.config.Options

DCD_TRUNCATE_EVERY_STEP - Static variable in class org.linqs.psl.config.Options

DCDInference - Class in org.linqs.psl.application.inference.mpe

Use an DCD reasoner to perform MPE inference.

DCDInference(List<Rule>, Database) - Constructor for class org.linqs.psl.application.inference.mpe.DCDInference

DCDMemoryTermStore - Class in org.linqs.psl.reasoner.dcd.term

An in-memory TermStore specifically for DCD terms.

DCDMemoryTermStore() - Constructor for class org.linqs.psl.reasoner.dcd.term.DCDMemoryTermStore

DCDObjectiveTerm - Class in org.linqs.psl.reasoner.dcd.term

A term in the objective to be optimized by a DCDReasoner.

DCDObjectiveTerm(VariableTermStore<DCDObjectiveTerm, RandomVariableAtom>, boolean, Hyperplane<RandomVariableAtom>, float, float) - Constructor for class org.linqs.psl.reasoner.dcd.term.DCDObjectiveTerm

DCDReasoner - Class in org.linqs.psl.reasoner.dcd

Uses an SGD optimization method to optimize its GroundRules.

DCDReasoner() - Constructor for class org.linqs.psl.reasoner.dcd.DCDReasoner

DCDStreamingCacheIterator - Class in org.linqs.psl.reasoner.dcd.term

DCDStreamingCacheIterator(DCDStreamingTermStore, boolean, List<DCDObjectiveTerm>, List<DCDObjectiveTerm>, ByteBuffer, ByteBuffer, boolean, int[], boolean, int) - Constructor for class org.linqs.psl.reasoner.dcd.term.DCDStreamingCacheIterator

DCDStreamingInference - Class in org.linqs.psl.application.inference.mpe

Use streaming grounding and inference with a DCD reasoner.

DCDStreamingInference(List<Rule>, Database) - Constructor for class org.linqs.psl.application.inference.mpe.DCDStreamingInference

DCDStreamingInitialRoundIterator - Class in org.linqs.psl.reasoner.dcd.term

Iterate over all the terms that come up from grounding.

DCDStreamingInitialRoundIterator(DCDStreamingTermStore, List<WeightedRule>, AtomManager, HyperplaneTermGenerator<DCDObjectiveTerm, RandomVariableAtom>, List<DCDObjectiveTerm>, List<DCDObjectiveTerm>, ByteBuffer, ByteBuffer, int) - Constructor for class org.linqs.psl.reasoner.dcd.term.DCDStreamingInitialRoundIterator

DCDStreamingTermStore - Class in org.linqs.psl.reasoner.dcd.term

A term store that iterates over ground queries directly (obviating the GroundRuleStore).

DCDStreamingTermStore(List<Rule>, AtomManager) - Constructor for class org.linqs.psl.reasoner.dcd.term.DCDStreamingTermStore

DCDTermGenerator - Class in org.linqs.psl.reasoner.dcd.term

A TermGenerator for DCD objective terms.

DCDTermGenerator() - Constructor for class org.linqs.psl.reasoner.dcd.term.DCDTermGenerator

DEFAULT_DELIMITER - Static variable in class org.linqs.psl.database.loading.Inserter

DEFAULT_EVIDENCE_VALUE - Static variable in class org.linqs.psl.database.rdbms.RDBMSInserter

DEFAULT_INITIAL_NUMBER - Static variable in class org.linqs.psl.util.HashCode

DEFAULT_MULTIPLIER - Static variable in class org.linqs.psl.util.HashCode

DEFAULT_MULTIROW_COUNT - Static variable in class org.linqs.psl.database.rdbms.RDBMSInserter

The number of records in each multi-row insert.

DEFAULT_PAGE_SIZE - Static variable in class org.linqs.psl.database.rdbms.RDBMSInserter

The number of inserts in each batch.

defaultValue() - Method in class org.linqs.psl.config.Option

deleteAtom(GroundAtom) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase

deleteAtom(GroundAtom) - Method in interface org.linqs.psl.database.WritableDatabase

Removes the GroundAtom from the Database, if it exists.

deletePartition(Partition) - Method in interface org.linqs.psl.database.DataStore

Deletes all GroundAtoms persisted in a Partition.

deletePartition(Partition) - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore

DELIM - Static variable in class org.linqs.psl.application.learning.weight.search.grid.GridSearch

The delimiter to separate rule weights (and lication ids).

DELIM - Static variable in class org.linqs.psl.application.learning.weight.search.grid.RankSearch

The delimiter to separate rule weights (and lication ids).

DELIM - Static variable in class org.linqs.psl.evaluation.statistics.CategoricalEvaluator

DELIM - Static variable in class org.linqs.psl.model.predicate.model.SupportingModel

description() - Method in class org.linqs.psl.config.Option

DiscreteEvaluator - Class in org.linqs.psl.evaluation.statistics

Compute various discrete statistics using a threshold.

DiscreteEvaluator() - Constructor for class org.linqs.psl.evaluation.statistics.DiscreteEvaluator

DiscreteEvaluator(double) - Constructor for class org.linqs.psl.evaluation.statistics.DiscreteEvaluator

DiscreteEvaluator(double, String) - Constructor for class org.linqs.psl.evaluation.statistics.DiscreteEvaluator

DiscreteEvaluator(double, DiscreteEvaluator.RepresentativeMetric) - Constructor for class org.linqs.psl.evaluation.statistics.DiscreteEvaluator

DiscreteEvaluator.RepresentativeMetric - Enum in org.linqs.psl.evaluation.statistics

Disjunction - Class in org.linqs.psl.model.formula

Disjunction(Formula...) - Constructor for class org.linqs.psl.model.formula.Disjunction

dissatisfaction - Variable in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule

div(float) - Method in class org.linqs.psl.util.FloatMatrix

Scalar division (not in-place).

div(float, boolean) - Method in class org.linqs.psl.util.FloatMatrix

Scalar division.

Divide - Class in org.linqs.psl.model.rule.arithmetic.expression.coefficient

A coefficient to represent division.

Divide(Coefficient, Coefficient) - Constructor for class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Divide

DNFClause(List<Atom>, List<Atom>) - Constructor for class org.linqs.psl.model.formula.FormulaAnalysis.DNFClause

doLearn() - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior

doLearn() - Method in class org.linqs.psl.application.learning.weight.search.grid.BaseGridSearch

doLearn() - Method in class org.linqs.psl.application.learning.weight.search.Hyperband

doLearn() - Method in class org.linqs.psl.application.learning.weight.VotedPerceptron

doLearn() - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication

Do the actual learning procedure.

dot(FloatMatrix) - Method in class org.linqs.psl.util.FloatMatrix

Dot product.

DoubleAttribute - Class in org.linqs.psl.model.term

An Attribute that encapsulates a Double.

DoubleAttribute(Double) - Constructor for class org.linqs.psl.model.term.DoubleAttribute

Constructs a Double attribute from a Double

dropColumnDefault(String, String) - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver

Remove the default value for a column.

E

elementAdd(FloatMatrix) - Method in class org.linqs.psl.util.FloatMatrix

Element-wise addition (not in-place).

elementAdd(FloatMatrix, boolean) - Method in class org.linqs.psl.util.FloatMatrix

Element-wise addition.

elementDiv(FloatMatrix) - Method in class org.linqs.psl.util.FloatMatrix

Element-wise division (not in-place).

elementDiv(FloatMatrix, boolean) - Method in class org.linqs.psl.util.FloatMatrix

Element-wise division.

elementLog() - Method in class org.linqs.psl.util.FloatMatrix

Element-wise natural log (not in-place).

elementLog(boolean) - Method in class org.linqs.psl.util.FloatMatrix

Element-wise natural log.

elementMul(FloatMatrix) - Method in class org.linqs.psl.util.FloatMatrix

Element-wise multiplication (not in-place).

elementMul(FloatMatrix, boolean) - Method in class org.linqs.psl.util.FloatMatrix

Element-wise multiplication.

elementSub(FloatMatrix) - Method in class org.linqs.psl.util.FloatMatrix

Element-wise difference (not in-place).

elementSub(FloatMatrix, boolean) - Method in class org.linqs.psl.util.FloatMatrix

Element-wise difference.

enableAccessExceptions - Variable in class org.linqs.psl.database.atom.AtomManager

If the specific AtomManager supports access exceptions, then this will control if they are actually thrown.

enableAccessExceptions(boolean) - Method in class org.linqs.psl.database.atom.AtomManager

Set whether or not to throw access exceptions.

ensureCapacity(int) - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore

ensureCapacity(int) - Method in class org.linqs.psl.reasoner.term.MemoryTermStore

ensureCapacity(int) - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore

ensureCapacity(int) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

ensureCapacity(int) - Method in interface org.linqs.psl.reasoner.term.TermStore

Ensure that the underlying stuctures can have the required term capacity.

ensureVariableCapacity(int) - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore

Make sure we allocate the right amount of memory for global variables.

ensureVariableCapacity(int) - Method in class org.linqs.psl.reasoner.term.MemoryTermStore

ensureVariableCapacity(int) - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore

Make sure we allocate the right amount of memory for global variables.

ensureVariableCapacity(int) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

ensureVariableCapacity(int) - Method in interface org.linqs.psl.reasoner.term.TermStore

Ensure that the underlying stuctures can have the required variable capacity.

entityArgumentIndexes - Variable in class org.linqs.psl.model.predicate.model.SupportingModel

The indexes of this predicate that compose the entity ID.

entityIndex - Variable in class org.linqs.psl.model.predicate.model.SupportingModel.AtomIndexes

entityIndexMapping - Variable in class org.linqs.psl.model.predicate.model.SupportingModel

Map the ID for an entity to an index.

EPSILON - Static variable in class org.linqs.psl.util.MathUtils

EPSILON_FLOAT - Static variable in class org.linqs.psl.util.MathUtils

Equal - Static variable in class org.linqs.psl.model.predicate.GroundingOnlyPredicate

True if arguments are equal.

equals(Object) - Method in class org.linqs.psl.database.Partition

equals(Object) - Method in class org.linqs.psl.model.atom.Atom

equals(Object) - Method in class org.linqs.psl.model.formula.AbstractBranchFormula

equals(Object) - Method in class org.linqs.psl.model.formula.Implication

equals(Object) - Method in class org.linqs.psl.model.formula.Negation

equals(Object) - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule

equals(Object) - Method in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression

equals(Object) - Method in class org.linqs.psl.model.rule.arithmetic.expression.SummationAtom

equals(Object) - Method in class org.linqs.psl.model.rule.arithmetic.expression.SummationVariable

equals(Object) - Method in class org.linqs.psl.model.rule.arithmetic.UnweightedArithmeticRule

equals(Object) - Method in class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule

equals(Object) - Method in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule

equals(Object) - Method in class org.linqs.psl.model.rule.logical.AbstractLogicalRule

equals(Object) - Method in class org.linqs.psl.model.rule.logical.UnweightedLogicalRule

equals(Object) - Method in class org.linqs.psl.model.rule.logical.WeightedLogicalRule

equals(Object) - Method in class org.linqs.psl.model.term.DoubleAttribute

A DoubleAttribute is equal to another Object if that Object is a DoubleAttribute and their values are equal.

equals(Object) - Method in class org.linqs.psl.model.term.IntegerAttribute

An IntegerAttribute is equal to another Object if that Object is an IntegerAttribute and their values are equal.

equals(Object) - Method in class org.linqs.psl.model.term.LongAttribute

A LongAttribute is equal to another Object if that Object is a LongAttribute and their values are equal.

equals(Object) - Method in class org.linqs.psl.model.term.StringAttribute

A StringAttribute is equal to another Object if that Object is a TextAttribute and their values are equal.

equals(Object) - Method in interface org.linqs.psl.model.term.Term

equals(Object) - Method in class org.linqs.psl.model.term.UniqueIntID

equals(Object) - Method in class org.linqs.psl.model.term.UniqueStringID

equals(Object) - Method in class org.linqs.psl.model.term.Variable

equals(Object) - Method in class org.linqs.psl.reasoner.admm.term.LocalVariable

equals(Object) - Method in class org.linqs.psl.util.FloatMatrix

equals(double, double) - Static method in class org.linqs.psl.util.MathUtils

equals(double, double, double) - Static method in class org.linqs.psl.util.MathUtils

equals(float, float) - Static method in class org.linqs.psl.util.MathUtils

equals(float, float, float) - Static method in class org.linqs.psl.util.MathUtils

equalsRelaxed(double, double) - Static method in class org.linqs.psl.util.MathUtils

equalsRelaxed(float, float) - Static method in class org.linqs.psl.util.MathUtils

equalsStrict(double, double) - Static method in class org.linqs.psl.util.MathUtils

equalsStrict(float, float) - Static method in class org.linqs.psl.util.MathUtils

EVAL_CAT_CATEGORY_INDEXES - Static variable in class org.linqs.psl.config.Options

EVAL_CAT_DEFAULT_PREDICATE - Static variable in class org.linqs.psl.config.Options

EVAL_CAT_REPRESENTATIVE - Static variable in class org.linqs.psl.config.Options

EVAL_CONT_REPRESENTATIVE - Static variable in class org.linqs.psl.config.Options

EVAL_DISCRETE_REPRESENTATIVE - Static variable in class org.linqs.psl.config.Options

EVAL_DISCRETE_THRESHOLD - Static variable in class org.linqs.psl.config.Options

EVAL_RANKING_REPRESENTATIVE - Static variable in class org.linqs.psl.config.Options

EVAL_RANKING_THRESHOLD - Static variable in class org.linqs.psl.config.Options

evaluate() - Method in class org.linqs.psl.reasoner.admm.term.ADMMObjectiveTerm

Evaluate this potential using the local variables.

evaluate(float[]) - Method in class org.linqs.psl.reasoner.admm.term.ADMMObjectiveTerm

Evaluate this potential using the given consensus values.

evaluate() - Method in class org.linqs.psl.reasoner.admm.term.HingeLossTerm

weight * max(0.0, coefficients^T * x - constant)

evaluate(float[]) - Method in class org.linqs.psl.reasoner.admm.term.HingeLossTerm

evaluate() - Method in class org.linqs.psl.reasoner.admm.term.HyperplaneTerm

coefficients^T * x - constant

evaluate(float[]) - Method in class org.linqs.psl.reasoner.admm.term.HyperplaneTerm

evaluate() - Method in class org.linqs.psl.reasoner.admm.term.LinearConstraintTerm

evaluate(float[]) - Method in class org.linqs.psl.reasoner.admm.term.LinearConstraintTerm

evaluate() - Method in class org.linqs.psl.reasoner.admm.term.LinearLossTerm

weight * coefficients^T * x

evaluate(float[]) - Method in class org.linqs.psl.reasoner.admm.term.LinearLossTerm

evaluate() - Method in class org.linqs.psl.reasoner.admm.term.SquaredHingeLossTerm

weight * [max(coefficients^T * x - constant, 0.0)]^2

evaluate(float[]) - Method in class org.linqs.psl.reasoner.admm.term.SquaredHingeLossTerm

evaluate() - Method in class org.linqs.psl.reasoner.admm.term.SquaredHyperplaneTerm

coefficients^T * x - constant

evaluate(float[]) - Method in class org.linqs.psl.reasoner.admm.term.SquaredHyperplaneTerm

evaluate() - Method in class org.linqs.psl.reasoner.admm.term.SquaredLinearLossTerm

weight * (coeffs^T * x - constant)^2

evaluate(float[]) - Method in class org.linqs.psl.reasoner.admm.term.SquaredLinearLossTerm

evaluate(float[]) - Method in class org.linqs.psl.reasoner.dcd.term.DCDObjectiveTerm

evaluate(float[]) - Method in class org.linqs.psl.reasoner.sgd.term.SGDObjectiveTerm

evaluator - Variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication

Evaluator - Class in org.linqs.psl.evaluation.statistics

Compute some metric (or set of matrics) for some predicted and labeled data.

Evaluator() - Constructor for class org.linqs.psl.evaluation.statistics.Evaluator

EXECUTABLE_CLEAN_INPUT - Static variable in class org.linqs.psl.config.Options

EXECUTABLE_CLEAN_OUTPUT - Static variable in class org.linqs.psl.config.Options

EXECUTABLE_REASONER_PATH - Static variable in class org.linqs.psl.config.Options

executableInputPath - Variable in class org.linqs.psl.reasoner.ExecutableReasoner

The file that PSL will write for the reasoner.

executableOutputPath - Variable in class org.linqs.psl.reasoner.ExecutableReasoner

The file that the reasoner will write before temination.

executablePath - Variable in class org.linqs.psl.reasoner.ExecutableReasoner

The path the to executable to call.

ExecutableReasoner - Class in org.linqs.psl.reasoner

An abstract superclass for reasoners implemented as command-line executables.

ExecutableReasoner() - Constructor for class org.linqs.psl.reasoner.ExecutableReasoner

ExecutableReasoner(String, String, String, String...) - Constructor for class org.linqs.psl.reasoner.ExecutableReasoner

executeGroundingQuery(Formula) - Method in class org.linqs.psl.database.atom.AtomManager

Calls ReadableDatabase.executeGroundingQuery(Formula) on the encapsulated Database.

executeGroundingQuery(Formula) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase

executeGroundingQuery(Formula) - Method in interface org.linqs.psl.database.ReadableDatabase

Like executeQuery(), but specifically for grounding queries.

executeQuery(DatabaseQuery) - Method in class org.linqs.psl.database.atom.AtomManager

Calls ReadableDatabase.executeQuery(DatabaseQuery) on the encapsulated Database.

executeQuery(DatabaseQuery) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase

executeQuery(RawQuery) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase

executeQuery(Map<Variable, Integer>, VariableTypeMap, String) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase

A more general form for executeQuery().

executeQuery(DatabaseQuery) - Method in interface org.linqs.psl.database.ReadableDatabase

Returns all groundings of a Formula that match a DatabaseQuery.

executeQueryIterator(RawQuery) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase

executeQueryIterator(Map<Variable, Integer>, VariableTypeMap, String) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase

Note that the constants are in the order specified by the projection map.

executeQueryIterator(String, Map<Variable, Integer>, int[], ConstantType[]) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase

expectedIncompatibility - Variable in class org.linqs.psl.application.learning.weight.VotedPerceptron

expression - Variable in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule

ExternalFunction - Interface in org.linqs.psl.model.function

ExternalFunctionalPredicate - Class in org.linqs.psl.model.predicate

A FunctionalPredicate which uses an ExternalFunction to compute truth values.

eye(int) - Static method in class org.linqs.psl.util.FloatMatrix

Make an identity matrix.

F

f1() - Method in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator

factorial(BigInteger) - Static method in class org.linqs.psl.util.MathUtils

fetchOptions() - Static method in class org.linqs.psl.config.Options

Reflexively parse the options from this class.

filter(Iterable<T>, IteratorUtils.FilterFunction<T>) - Static method in class org.linqs.psl.util.IteratorUtils

Given an Iterable, return a new Iterable that filters baseed off of some function.

filterClass(Iterable<T>, Class<S>) - Static method in class org.linqs.psl.util.IteratorUtils

Given an Iterable, return a new Iterable that only returns values that are an instance of the provided class.

filters - Variable in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule

finalizeCreateTable(CreateTableQuery) - Method in interface org.linqs.psl.database.rdbms.driver.DatabaseDriver

Gives the driver a chance to perform any final manipulations to the CREATE TABLE statement.

finalizeCreateTable(CreateTableQuery) - Method in class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver

finalizeCreateTable(CreateTableQuery) - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver

fit() - Method in class org.linqs.psl.model.predicate.model.ModelPredicate

fit() - Method in class org.linqs.psl.model.predicate.model.SupportingModel

Fit the model using values set through setLabel().

fixedByteSize() - Method in class org.linqs.psl.reasoner.dcd.term.DCDObjectiveTerm

The number of bytes that writeFixedValues() will need to represent this term.

fixedByteSize() - Method in class org.linqs.psl.reasoner.sgd.term.SGDObjectiveTerm

The number of bytes that writeFixedValues() will need to represent this term.

FLAG_LT_ONE - Static variable in class org.linqs.psl.config.Option

FLAG_LTE_ONE - Static variable in class org.linqs.psl.config.Option

FLAG_NON_NEGATIVE - Static variable in class org.linqs.psl.config.Option

FLAG_POSITIVE - Static variable in class org.linqs.psl.config.Option

flags() - Method in class org.linqs.psl.config.Option

flatten() - Method in class org.linqs.psl.model.atom.Atom

flatten() - Method in class org.linqs.psl.model.formula.AbstractBranchFormula

flatten() - Method in interface org.linqs.psl.model.formula.Formula

Collapses nested formulas of the same type and remove duplicates at the top level.

flatten() - Method in class org.linqs.psl.model.formula.Implication

flatten() - Method in class org.linqs.psl.model.formula.Negation

FloatMatrix - Class in org.linqs.psl.util

A dense float matrix representation and utilities.

FloatMatrix() - Constructor for class org.linqs.psl.util.FloatMatrix

Make an empty matrix.

FloatMatrix(float[], int, int) - Constructor for class org.linqs.psl.util.FloatMatrix

Make a matrix by assuming the given data.

FloatMatrix(float[], int, int, boolean) - Constructor for class org.linqs.psl.util.FloatMatrix

Make a matrix using existing data.

FloatMatrix(float[][]) - Constructor for class org.linqs.psl.util.FloatMatrix

Make a matrix by assuming the given data.

foreach(Iterable<T>, Parallel.Worker<T>) - Static method in class org.linqs.psl.util.Parallel

Invoke a worker once for each item.

foreach(Iterator<T>, Parallel.Worker<T>) - Static method in class org.linqs.psl.util.Parallel

Formula - Interface in org.linqs.psl.model.formula

A logical formula composed of Atoms and logical operators.

formula - Variable in class org.linqs.psl.model.rule.logical.AbstractLogicalRule

Formula2SQL - Class in org.linqs.psl.database.rdbms

Formula2SQL(Set<Variable>, RDBMSDatabase) - Constructor for class org.linqs.psl.database.rdbms.Formula2SQL

Convert a formula to a query that will fetch all possible combinations of constants used in that formual (aka grounding).

Formula2SQL(Set<Variable>, RDBMSDatabase, boolean) - Constructor for class org.linqs.psl.database.rdbms.Formula2SQL

See above description.

Formula2SQL(Set<Variable>, RDBMSDatabase, boolean, Atom) - Constructor for class org.linqs.psl.database.rdbms.Formula2SQL

See above description.

FormulaAnalysis - Class in org.linqs.psl.model.formula

Converts a Formula to a simplified Disjunctive Normal Form view and makes the clauses available.

FormulaAnalysis(Formula) - Constructor for class org.linqs.psl.model.formula.FormulaAnalysis

FormulaAnalysis.DNFClause - Class in org.linqs.psl.model.formula

formulas - Variable in class org.linqs.psl.model.formula.AbstractBranchFormula

fScore(double) - Method in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator

FunctionalPredicate - Class in org.linqs.psl.model.predicate

A Predicate with truth values defined by some function.

FunctionalPredicate(String, ConstantType[]) - Constructor for class org.linqs.psl.model.predicate.FunctionalPredicate

FunctionalPredicate(String, ConstantType[], boolean) - Constructor for class org.linqs.psl.model.predicate.FunctionalPredicate

FunctionComparator - Enum in org.linqs.psl.reasoner.function

Enumerates possible equality and inequality relationships among numeric functions and values.

FunctionTerm - Interface in org.linqs.psl.reasoner.function

A numeric function.

G

GaussianProcessKernel - Class in org.linqs.psl.application.learning.weight.bayesian

All kernel methods MUST be threadsafe.

GaussianProcessKernel() - Constructor for class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel

GaussianProcessKernel(float[]) - Constructor for class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel

Weights are the number of groundings for a rule divided by total number of groundings.

GaussianProcessKernel.Space - Enum in org.linqs.psl.application.learning.weight.bayesian

GaussianProcessPrior - Class in org.linqs.psl.application.learning.weight.bayesian

GaussianProcessPrior(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior

GaussianProcessPrior(Model, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior

GaussianProcessPrior.ValueAndStd - Class in org.linqs.psl.application.learning.weight.bayesian

GaussianProcessPrior.WeightConfig - Class in org.linqs.psl.application.learning.weight.bayesian

GeneralFunction - Class in org.linqs.psl.reasoner.function

A general function that can handle various cases.

GeneralFunction(boolean, boolean, int) - Constructor for class org.linqs.psl.reasoner.function.GeneralFunction

generateTerms(GroundRuleStore, TermStore<T, V>) - Method in class org.linqs.psl.reasoner.term.HyperplaneTermGenerator

generateTerms(GroundRuleStore, TermStore<T, V>) - Method in interface org.linqs.psl.reasoner.term.TermGenerator

Use the ground rules in |ruleStore| to generate optimization terms and populate |termStore|.

get() - Method in class org.linqs.psl.config.Option

Fetch the Option's configuration value from the Config class.

get(int, Variable) - Method in class org.linqs.psl.database.rdbms.RDBMSResultList

get(int) - Method in class org.linqs.psl.database.rdbms.RDBMSResultList

get(int, Variable) - Method in interface org.linqs.psl.database.ResultList

Returns a substitution for a single Variable

get(int) - Method in interface org.linqs.psl.database.ResultList

Returns a substitution for all Variables.

get(int) - Method in class org.linqs.psl.model.formula.AbstractBranchFormula

get(String) - Static method in class org.linqs.psl.model.predicate.ExternalFunctionalPredicate

get(String, ExternalFunction) - Static method in class org.linqs.psl.model.predicate.ExternalFunctionalPredicate

Get a predicate if one already exists, otherwise create a new one.

get(String) - Static method in class org.linqs.psl.model.predicate.model.ModelPredicate

The an existing standard predicate (or null if none with this name exists).

get(String, SupportingModel, ConstantType...) - Static method in class org.linqs.psl.model.predicate.model.ModelPredicate

Get a predicate if one already exists, othereise create a new one.

get(String) - Static method in class org.linqs.psl.model.predicate.Predicate

get(String) - Static method in class org.linqs.psl.model.predicate.StandardPredicate

The an existing standard predicate (or null if none with this name exists).

get(String, ConstantType...) - Static method in class org.linqs.psl.model.predicate.StandardPredicate

Get a predicate if one already exists, othereise create a new one.

get(int) - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore

get(int) - Method in class org.linqs.psl.reasoner.term.MemoryTermStore

get(int) - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore

get(int) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

get(int) - Method in interface org.linqs.psl.reasoner.term.TermStore

get(int, int) - Method in class org.linqs.psl.util.FloatMatrix

get() - Static method in class org.linqs.psl.util.Version

getAccessException() - Method in class org.linqs.psl.model.atom.RandomVariableAtom

getAllCachedAtoms() - Method in class org.linqs.psl.database.Database

getAllCachedAtoms() - Method in interface org.linqs.psl.database.ReadableDatabase

Fetch all the GroundAtoms in this database's cache.

getAllCachedRandomVariableAtoms() - Method in class org.linqs.psl.database.Database

getAllCachedRandomVariableAtoms() - Method in interface org.linqs.psl.database.ReadableDatabase

Fetch all the RandomVariableAtoms in this database's cache.

getAllGroundAtoms(StandardPredicate) - Method in class org.linqs.psl.database.Database

getAllGroundAtoms(StandardPredicate, List<Integer>) - Method in class org.linqs.psl.database.Database

getAllGroundAtoms(StandardPredicate, List<Integer>) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase

getAllGroundAtoms(StandardPredicate) - Method in interface org.linqs.psl.database.ReadableDatabase

Fetch all the ground atoms for a predicate.

getAllGroundObservedAtoms(StandardPredicate) - Method in class org.linqs.psl.database.Database

getAllGroundObservedAtoms(StandardPredicate) - Method in interface org.linqs.psl.database.ReadableDatabase

Fetch all the ground ObservedAtoms for a predicate.

getAllGroundRandomVariableAtoms(StandardPredicate) - Method in class org.linqs.psl.database.Database

getAllGroundRandomVariableAtoms(StandardPredicate) - Method in interface org.linqs.psl.database.ReadableDatabase

Fetch all the ground RandomVariableAtoms for a predicate.

getAllPartitions() - Method in class org.linqs.psl.database.rdbms.DataStoreMetadata

getAllPredictions() - Method in class org.linqs.psl.application.learning.weight.TrainingMap

Get all the predictions (unobserved targets).

getAllStats() - Method in class org.linqs.psl.evaluation.statistics.CategoricalEvaluator

getAllStats() - Method in class org.linqs.psl.evaluation.statistics.ContinuousEvaluator

getAllStats() - Method in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator

getAllStats() - Method in class org.linqs.psl.evaluation.statistics.Evaluator

Get a string that contains the full range of stats that this Evaluator can provide.

getAllStats() - Method in class org.linqs.psl.evaluation.statistics.RankingEvaluator

getAllTargets() - Method in class org.linqs.psl.application.learning.weight.TrainingMap

Get all atoms that appeared in the target database.

getAllTruths() - Method in class org.linqs.psl.application.learning.weight.TrainingMap

Get all atoms that appeared in the truth database.

getAllValuesByType(String, String) - Method in class org.linqs.psl.database.rdbms.DataStoreMetadata

getArguments() - Method in class org.linqs.psl.model.atom.Atom

Returns the arguments associated with this atom.

getArguments() - Method in class org.linqs.psl.model.atom.GroundAtom

getArguments() - Method in class org.linqs.psl.model.rule.arithmetic.expression.SummationAtom

Returns the arguments associated with this SummationAtom.

getArgumentType(int) - Method in class org.linqs.psl.model.predicate.Predicate

Returns the ArgumentType which a Term must have to be a valid argument for a particular argument position of this Predicate.

getArgumentTypes() - Method in interface org.linqs.psl.model.function.ExternalFunction

getArity() - Method in class org.linqs.psl.database.rdbms.RDBMSResultList

getArity() - Method in interface org.linqs.psl.database.ResultList

getArity() - Method in class org.linqs.psl.model.atom.Atom

Returns the number of arguments to the associated predicate.

getArity() - Method in interface org.linqs.psl.model.function.ExternalFunction

getArity() - Method in class org.linqs.psl.model.predicate.Predicate

Returns the number of Terms that are related when using this Predicate.

getArity() - Method in class org.linqs.psl.model.rule.arithmetic.expression.SummationAtom

Returns the number of arguments to the associated Predicate.

getArity() - Method in interface org.linqs.psl.model.rule.arithmetic.expression.SummationAtomOrAtom

getAtom(Predicate, Constant...) - Method in class org.linqs.psl.database.atom.AtomManager

Returns the GroundAtom for the given Predicate and GroundTerms.

getAtom(Predicate, Constant...) - Method in class org.linqs.psl.database.atom.LazyAtomManager

getAtom(Predicate, Constant...) - Method in class org.linqs.psl.database.atom.PersistedAtomManager

getAtom(Predicate, Constant...) - Method in class org.linqs.psl.database.atom.SimpleAtomManager

getAtom(StandardPredicate, boolean, Constant...) - Method in class org.linqs.psl.database.Database

getAtom(Predicate, Constant...) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase

getAtom(StandardPredicate, boolean, Constant...) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase

getAtom(Predicate, Constant...) - Method in interface org.linqs.psl.database.ReadableDatabase

Returns the GroundAtom for the given Predicate and GroundTerms.

getAtomCoefficients() - Method in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression

getAtomIdentifier(String[], int[]) - Method in class org.linqs.psl.model.predicate.model.SupportingModel

getAtomIdentifier(RandomVariableAtom, int[]) - Method in class org.linqs.psl.model.predicate.model.SupportingModel

getAtomIndexes(RandomVariableAtom) - Method in class org.linqs.psl.model.predicate.model.SupportingModel

getAtomManager() - Method in class org.linqs.psl.application.inference.InferenceApplication

getAtoms(Set<Atom>) - Method in class org.linqs.psl.model.atom.Atom

getAtoms(Set<Atom>) - Method in class org.linqs.psl.model.formula.AbstractBranchFormula

getAtoms(Set<Atom>) - Method in interface org.linqs.psl.model.formula.Formula

getAtoms(Set<Atom>) - Method in class org.linqs.psl.model.formula.Implication

getAtoms(Set<Atom>) - Method in class org.linqs.psl.model.formula.Negation

getAtoms() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule

getAtoms() - Method in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression

getAtoms() - Method in interface org.linqs.psl.model.rule.GroundRule

getAtoms() - Method in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule

getAugmentedLagrangianPenalty() - Method in class org.linqs.psl.reasoner.admm.ADMMReasoner

getBigDecimal(String, BigDecimal) - Static method in class org.linqs.psl.config.Config

getBigInteger(String, BigInteger) - Static method in class org.linqs.psl.config.Config

getBody() - Method in class org.linqs.psl.model.formula.Implication

getBodyPredicates() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule

Get all the predicates used in the body of this rule (no filters).

getBoolean(String, boolean) - Static method in class org.linqs.psl.config.Config

getBoolean(String, Boolean) - Static method in class org.linqs.psl.config.Config

getBoolean() - Method in class org.linqs.psl.config.Option

getByte(String, byte) - Static method in class org.linqs.psl.config.Config

getByte(String, Byte) - Static method in class org.linqs.psl.config.Config

getCachedAtom(QueryAtom) - Method in class org.linqs.psl.database.atom.AtomCache

Checks whether a GroundAtom matching a QueryAtom exists in the cache and returns it if so.

getCachedAtoms() - Method in class org.linqs.psl.database.atom.AtomCache

getCachedAtoms(Predicate) - Method in class org.linqs.psl.database.atom.AtomCache

Returns all GroundAtoms in this AtomCache with a given Predicate.

getCachedObservedAtoms() - Method in class org.linqs.psl.database.atom.AtomCache

getCachedRandomVariableAtoms() - Method in class org.linqs.psl.database.atom.AtomCache

getCachedRVACount() - Method in class org.linqs.psl.database.atom.AtomManager

Get the number of RandomVariableAtoms cached by the database.

getCachedRVACount() - Method in class org.linqs.psl.database.Database

getCachedRVACount() - Method in interface org.linqs.psl.database.ReadableDatabase

Get the number of RandomVariableAtoms in the database's cache.

getCacheIterator() - Method in class org.linqs.psl.reasoner.dcd.term.DCDStreamingTermStore

getCacheIterator() - Method in class org.linqs.psl.reasoner.sgd.term.SGDStreamingTermStore

getCacheIterator() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

Get an iterator that will read and write from disk.

getCardinality(String) - Method in class org.linqs.psl.database.rdbms.TableStats

Get the cardinality (number of unique rows) of a specific column.

getCoefficient(int) - Method in class org.linqs.psl.reasoner.function.GeneralFunction

getCoefficient(int) - Method in class org.linqs.psl.reasoner.term.Hyperplane

getCoefficients() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule

getCoefficients() - Method in class org.linqs.psl.reasoner.term.Hyperplane

getComparator() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule

getComparator() - Method in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression

getComparator() - Method in class org.linqs.psl.reasoner.function.ConstraintTerm

getCompatibilityRules() - Method in interface org.linqs.psl.grounding.GroundRuleStore

getCompatibilityRules() - Method in class org.linqs.psl.grounding.MemoryGroundRuleStore

getConfigs() - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior

getConnection() - Method in interface org.linqs.psl.database.rdbms.driver.DatabaseDriver

Returns a connection to the database.

getConnection() - Method in class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver

getConnection() - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver

getConnection() - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore

getConsensusValues() - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore

getConstant() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule

getConstant(String, ConstantType) - Static method in enum org.linqs.psl.model.term.ConstantType

Convert a general string into the appropriate Constant.

getConstant() - Method in class org.linqs.psl.reasoner.function.GeneralFunction

getConstant() - Method in class org.linqs.psl.reasoner.term.Hyperplane

getConstraintDefinition() - Method in class org.linqs.psl.model.rule.arithmetic.UnweightedGroundArithmeticRule

getConstraintDefinition() - Method in class org.linqs.psl.model.rule.logical.UnweightedGroundLogicalRule

getConstraintDefinition() - Method in interface org.linqs.psl.model.rule.UnweightedGroundRule

getConstraintRules() - Method in interface org.linqs.psl.grounding.GroundRuleStore

getConstraintRules() - Method in class org.linqs.psl.grounding.MemoryGroundRuleStore

getCount(Connection) - Method in class org.linqs.psl.database.rdbms.PredicateInfo

Get a count of all the rows in the table.

getCount() - Method in class org.linqs.psl.database.rdbms.TableStats

getDatabase() - Method in class org.linqs.psl.database.atom.AtomManager

getDatabase(Partition, Partition...) - Method in interface org.linqs.psl.database.DataStore

Creates a Database that can read from and write to a Partition and optionally read from additional Partitions.

getDatabase(Partition, StandardPredicate[], Partition...) - Method in interface org.linqs.psl.database.DataStore

getDatabase(Partition, Set<StandardPredicate>, Partition...) - Method in interface org.linqs.psl.database.DataStore

Creates a Database that can read from and write to a Partition and optionally read from additional Partitions.

getDatabase(Partition, Partition...) - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore

getDatabase(Partition, StandardPredicate[], Partition...) - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore

getDatabase(Partition, Set<StandardPredicate>, Partition...) - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore

getDataStore() - Method in class org.linqs.psl.database.Database

getDistinct() - Method in class org.linqs.psl.database.DatabaseQuery

getDNF() - Method in class org.linqs.psl.model.atom.Atom

getDNF() - Method in class org.linqs.psl.model.formula.Conjunction

getDNF() - Method in class org.linqs.psl.model.formula.Disjunction

getDNF() - Method in interface org.linqs.psl.model.formula.Formula

getDNF() - Method in class org.linqs.psl.model.formula.Implication

getDNF() - Method in class org.linqs.psl.model.formula.Negation

getDNFClause(int) - Method in class org.linqs.psl.model.formula.FormulaAnalysis

Returns the specified clause of the Formula after it has been converted to Disjunctive Normal Form.

getDouble(String, Double) - Static method in class org.linqs.psl.config.Config

getDouble(String, double) - Static method in class org.linqs.psl.config.Config

getDouble() - Method in class org.linqs.psl.config.Option

getDoubleTypeName() - Method in interface org.linqs.psl.database.rdbms.driver.DatabaseDriver

Get the type name for a double type.

getDoubleTypeName() - Method in class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver

getDoubleTypeName() - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver

getDriver() - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore

getEntityIndex(RandomVariableAtom) - Method in class org.linqs.psl.model.predicate.model.SupportingModel

getEpsilonAbs() - Method in class org.linqs.psl.reasoner.admm.ADMMReasoner

getEpsilonRel() - Method in class org.linqs.psl.reasoner.admm.ADMMReasoner

getException() - Method in class org.linqs.psl.util.Parallel.Worker

getExpectedTotalWeightedCompatibility(Iterable<WeightedGroundRule>) - Static method in class org.linqs.psl.grounding.GroundRules

Computes the expected weighted compatibility (1 - incompatibility) of a collection of WeightedGroundRules.

getExpectedTotalWeightedIncompatibility(Iterable<WeightedGroundRule>) - Static method in class org.linqs.psl.grounding.GroundRules

Computes the expected total weighted incompatibility of an iterable container of GroundCompatibilityRules from independently rounding each RandomVariableAtom to 1.0 or 0.0 with probability equal to its current truth value.

getExpectedWeightedCompatibility(WeightedGroundRule) - Static method in class org.linqs.psl.grounding.GroundRules

Computes the expected weighted compatibility (1 - incompatibility) of a WeightedGroundRule.

getExpression() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule

getExternalFunction() - Method in class org.linqs.psl.model.predicate.ExternalFunctionalPredicate

Get the ExternalFunction this predicate uses to compute truth values.

getFinalCoefficient() - Method in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression

getFloat(String, float) - Static method in class org.linqs.psl.config.Config

getFloat(String, Float) - Static method in class org.linqs.psl.config.Config

getFloat() - Method in class org.linqs.psl.config.Option

getFormula() - Method in class org.linqs.psl.database.DatabaseQuery

getFormula() - Method in class org.linqs.psl.model.formula.FormulaAnalysis

getFormula() - Method in class org.linqs.psl.model.formula.Negation

getFormula() - Method in class org.linqs.psl.model.rule.logical.AbstractLogicalRule

getFull() - Static method in class org.linqs.psl.util.Version

getFullMap() - Method in class org.linqs.psl.application.learning.weight.TrainingMap

Get the full mapping of target to truth atoms (unobserved and observed).

getFunction() - Method in class org.linqs.psl.reasoner.function.ConstraintTerm

getFunctionalAtoms() - Method in class org.linqs.psl.database.rdbms.Formula2SQL

getFunctionDefinition() - Method in class org.linqs.psl.model.rule.arithmetic.WeightedGroundArithmeticRule

getFunctionDefinition() - Method in class org.linqs.psl.model.rule.logical.WeightedGroundLogicalRule

getFunctionDefinition() - Method in interface org.linqs.psl.model.rule.WeightedGroundRule

getFunctionValue(GaussianProcessPrior.WeightConfig) - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior

getGlobalId() - Method in class org.linqs.psl.reasoner.admm.term.LocalVariable

getGlobalVariables() - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore

Get the RVAs managed by this term store.

getGroundingQuery(AtomManager) - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule

getGroundingQuery(AtomManager) - Method in class org.linqs.psl.model.rule.logical.AbstractLogicalRule

getGroundingQuery(AtomManager) - Method in interface org.linqs.psl.model.rule.Rule

Get the formual that we can use for grounding.

getGroundRule() - Method in class org.linqs.psl.reasoner.admm.term.ADMMObjectiveTerm

getGroundRules() - Method in interface org.linqs.psl.grounding.GroundRuleStore

getGroundRules(Rule) - Method in interface org.linqs.psl.grounding.GroundRuleStore

Returns every GroundRule that was instantiated by a given Rule.

getGroundRules() - Method in class org.linqs.psl.grounding.MemoryGroundRuleStore

getGroundRules(Rule) - Method in class org.linqs.psl.grounding.MemoryGroundRuleStore

getGroundRuleStore() - Method in class org.linqs.psl.application.inference.InferenceApplication

getHead() - Method in class org.linqs.psl.model.formula.Implication

getHistogram(String) - Method in class org.linqs.psl.database.rdbms.TableStats

getHostname() - Static method in class org.linqs.psl.util.SystemUtils

getID() - Method in class org.linqs.psl.database.Partition

getID() - Method in class org.linqs.psl.model.term.UniqueIntID

getID() - Method in class org.linqs.psl.model.term.UniqueStringID

getIgnoreVariables() - Method in class org.linqs.psl.database.DatabaseQuery

getIncompatibility() - Method in class org.linqs.psl.model.rule.arithmetic.WeightedGroundArithmeticRule

getIncompatibility(GroundAtom, float) - Method in class org.linqs.psl.model.rule.arithmetic.WeightedGroundArithmeticRule

getIncompatibility() - Method in class org.linqs.psl.model.rule.logical.WeightedGroundLogicalRule

getIncompatibility(GroundAtom, float) - Method in class org.linqs.psl.model.rule.logical.WeightedGroundLogicalRule

getIncompatibility() - Method in interface org.linqs.psl.model.rule.WeightedGroundRule

Returns the incompatibility of the truth values of this GroundRule's GroundAtoms.

getIncompatibility(GroundAtom, float) - Method in interface org.linqs.psl.model.rule.WeightedGroundRule

Returns the incompatibility of the truth values of this GroundRule's GroundAtoms given the replacment of a single atom's value with another value.

getInfeasibility() - Method in class org.linqs.psl.model.rule.arithmetic.UnweightedGroundArithmeticRule

getInfeasibility() - Method in class org.linqs.psl.model.rule.logical.UnweightedGroundLogicalRule

getInfeasibility() - Method in interface org.linqs.psl.model.rule.UnweightedGroundRule

Returns the infeasibility of the truth values of this GroundRule's GroundAtoms.

getInfeasibilityNorm(Iterable<UnweightedGroundRule>) - Static method in class org.linqs.psl.grounding.GroundRules

Computes the Euclidean norm of the infeasibilities of an iterable container of GroundConstraintRules.

getInferenceApplication(String, List<Rule>, Database) - Static method in class org.linqs.psl.application.inference.InferenceApplication

Construct an inference application given the data.

getInferenceApplication() - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication

getInitialRoundIterator() - Method in class org.linqs.psl.reasoner.dcd.term.DCDStreamingTermStore

getInitialRoundIterator() - Method in class org.linqs.psl.reasoner.sgd.term.SGDStreamingTermStore

getInitialRoundIterator() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

Get an iterator that will perform grounding queries and write the initial pages to disk.

getInserter(StandardPredicate, Partition) - Method in interface org.linqs.psl.database.DataStore

Creates an Inserter for persisting new GroundAtoms in a Partition.

getInserter(StandardPredicate, Partition) - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore

getInt(String, int) - Static method in class org.linqs.psl.config.Config

getInt() - Method in class org.linqs.psl.config.Option

getInteger(String, Integer) - Static method in class org.linqs.psl.config.Config

getLabelIndex(RandomVariableAtom) - Method in class org.linqs.psl.model.predicate.model.SupportingModel

getLabelMap() - Method in class org.linqs.psl.application.learning.weight.TrainingMap

Get the mapping of unobserved targets to truth atoms.

getLagrange() - Method in class org.linqs.psl.reasoner.admm.term.LocalVariable

getLagrange() - Method in class org.linqs.psl.reasoner.dcd.term.DCDObjectiveTerm

getLagrangianPenalty() - Method in class org.linqs.psl.reasoner.admm.ADMMReasoner

getLatentVariables() - Method in class org.linqs.psl.application.learning.weight.TrainingMap

Gets the latent variables (unobserved targets without a truth atom).

getLazyAtoms() - Method in class org.linqs.psl.database.atom.LazyAtomManager

getList(String, List<String>, boolean) - Static method in class org.linqs.psl.config.Config

Because list options can be quite large, we allow them to be suppressed on request.

getList(String, List<String>) - Static method in class org.linqs.psl.config.Config

getList(String, boolean) - Static method in class org.linqs.psl.config.Config

getList(String) - Static method in class org.linqs.psl.config.Config

getLocalVariables(int) - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore

getLocalVariableType() - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermGenerator

getLocalVariableType() - Method in class org.linqs.psl.reasoner.dcd.term.DCDTermGenerator

getLocalVariableType() - Method in class org.linqs.psl.reasoner.sgd.term.SGDTermGenerator

getLocalVariableType() - Method in class org.linqs.psl.reasoner.term.HyperplaneTermGenerator

Get the class object for the local vairable type.

getLong(String, long) - Static method in class org.linqs.psl.config.Config

getLong(String, Long) - Static method in class org.linqs.psl.config.Config

getLong() - Method in class org.linqs.psl.config.Option

getLoss() - Method in class org.linqs.psl.application.learning.weight.VotedPerceptron

getMetadata() - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore

getMissingLabels() - Method in class org.linqs.psl.application.learning.weight.TrainingMap

Gets observed targets that do not have an associated observed truth atom.

getMissingTargets() - Method in class org.linqs.psl.application.learning.weight.TrainingMap

Gets observed truth atoms that do not have an associated target atom.

getName() - Method in class org.linqs.psl.database.Partition

getName() - Method in class org.linqs.psl.model.predicate.Predicate

Returns the name of this Predicate.

getName() - Method in class org.linqs.psl.model.rule.AbstractRule

getName() - Method in interface org.linqs.psl.model.rule.Rule

getName() - Method in enum org.linqs.psl.model.term.ConstantType

getName() - Method in class org.linqs.psl.model.term.Variable

getNegatedDNF() - Method in class org.linqs.psl.model.rule.logical.AbstractLogicalRule

getNegativeAtoms() - Method in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule

getNegLiterals() - Method in class org.linqs.psl.model.formula.FormulaAnalysis.DNFClause

getNewObject(String, String) - Static method in class org.linqs.psl.config.Config

Returns a new instance of the class whose name associated with the given configuration key.

getNewObject() - Method in class org.linqs.psl.config.Option

getNewPartition() - Method in interface org.linqs.psl.database.DataStore

Requests a new Partition that is assigned an auto-generated name and the next unused ID.

getNewPartition() - Method in class org.linqs.psl.database.rdbms.DataStoreMetadata

getNewPartition() - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore

getNext(int) - Method in class org.linqs.psl.application.learning.weight.maxlikelihood.SimplexSampler

Samples a uniform point on the simplex of dimension d

getNextPoint(List<GaussianProcessPrior.WeightConfig>, int) - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior

getNormalizedRepMetric() - Method in class org.linqs.psl.evaluation.statistics.Evaluator

Combine getRepMetric() with isHigherRepBetter() so that higher values that come out of this method are always better.

getNoWriteIterator() - Method in class org.linqs.psl.reasoner.dcd.term.DCDStreamingTermStore

getNoWriteIterator() - Method in class org.linqs.psl.reasoner.sgd.term.SGDStreamingTermStore

getNoWriteIterator() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

Get an iterator that will not write to disk.

getNumDNFClauses() - Method in class org.linqs.psl.model.formula.FormulaAnalysis

getNumGlobalVariables() - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore

getNumLocalVariables() - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore

getNumSummationVariables() - Method in class org.linqs.psl.model.rule.arithmetic.expression.SummationAtom

getNumThreads() - Static method in class org.linqs.psl.util.Parallel

getNumVariables() - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore

getNumVariables() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

getNumVariables() - Method in interface org.linqs.psl.reasoner.term.VariableTermStore

getObservedMap() - Method in class org.linqs.psl.application.learning.weight.TrainingMap

Get the mapping of observed targets to truth atoms.

getOpenDatabases() - Method in interface org.linqs.psl.database.DataStore

Get all the currenly open databases associated with this data store.

getOpenDatabases() - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore

getOpenDataStores() - Static method in class org.linqs.psl.database.rdbms.RDBMSDataStore

getOrderedAtoms() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule

getPartition(String) - Method in interface org.linqs.psl.database.DataStore

Gets a new Partition of the DataStore with the given name.

getPartition(String) - Method in class org.linqs.psl.database.rdbms.DataStoreMetadata

getPartition(String) - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore

getPartitions() - Method in interface org.linqs.psl.database.DataStore

getPartitions() - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore

getPersisted() - Method in class org.linqs.psl.model.atom.RandomVariableAtom

getPersistedCount() - Method in class org.linqs.psl.database.atom.PersistedAtomManager

getPersistedRVAtoms() - Method in class org.linqs.psl.database.atom.PersistedAtomManager

getPos(Variable) - Method in class org.linqs.psl.database.rdbms.RDBMSResultList

getPositiveAtoms() - Method in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule

getPosLiterals() - Method in class org.linqs.psl.model.formula.FormulaAnalysis.DNFClause

getPredicate() - Method in class org.linqs.psl.model.atom.Atom

Returns the predicate associated with this Atom.

getPredicate() - Method in class org.linqs.psl.model.atom.RandomVariableAtom

getPredicate() - Method in class org.linqs.psl.model.rule.arithmetic.expression.SummationAtom

Returns the predicate associated with this SummationAtom.

getPredicateInfo(Predicate) - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore

Helper method for getting a predicate handle

getPredicateRowCount(StandardPredicate) - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore

getPredictedCategories(TrainingMap, StandardPredicate) - Method in class org.linqs.psl.evaluation.statistics.CategoricalEvaluator

Build up a set that has all the atoms that represet the best categorical assignments.

getProjectionMap() - Method in class org.linqs.psl.database.rdbms.Formula2SQL

getProjectionMap() - Method in class org.linqs.psl.database.rdbms.RawQuery

getProperty(String) - Static method in class org.linqs.psl.config.Config

Get a property from the configuration.

getQuery(Formula) - Method in class org.linqs.psl.database.rdbms.Formula2SQL

getQueryAtom() - Method in class org.linqs.psl.model.rule.arithmetic.expression.SummationAtom

getQueryFormula() - Method in class org.linqs.psl.model.formula.FormulaAnalysis.DNFClause

getQueryFormula() - Method in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression

Get a formula that can be used in a DatabaseQuery to fetch all the possibilites.

getReadPartitions() - Method in class org.linqs.psl.database.Database

getReasoner() - Method in class org.linqs.psl.application.inference.InferenceApplication

getRegisteredPredicates() - Method in interface org.linqs.psl.database.DataStore

Returns the set of StandardPredicates registered with this DataStore.

getRegisteredPredicates() - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore

getRepMetric() - Method in class org.linqs.psl.evaluation.statistics.CategoricalEvaluator

getRepMetric() - Method in class org.linqs.psl.evaluation.statistics.ContinuousEvaluator

getRepMetric() - Method in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator

getRepMetric() - Method in class org.linqs.psl.evaluation.statistics.Evaluator

The representative (rep) metric is the metric that was chosen to be the representative for this evaluator.

getRepMetric() - Method in class org.linqs.psl.evaluation.statistics.RankingEvaluator

getRewritableGroundingFormula(AtomManager) - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule

getRewritableGroundingFormula(AtomManager) - Method in class org.linqs.psl.model.rule.logical.AbstractLogicalRule

getRewritableGroundingFormula(AtomManager) - Method in interface org.linqs.psl.model.rule.Rule

Get a grounding formual that can be rewritten.

getRule() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule

getRule() - Method in class org.linqs.psl.model.rule.arithmetic.UnweightedGroundArithmeticRule

getRule() - Method in class org.linqs.psl.model.rule.arithmetic.WeightedGroundArithmeticRule

getRule() - Method in interface org.linqs.psl.model.rule.GroundRule

getRule() - Method in class org.linqs.psl.model.rule.logical.UnweightedGroundLogicalRule

getRule() - Method in class org.linqs.psl.model.rule.logical.WeightedGroundLogicalRule

getRule() - Method in interface org.linqs.psl.model.rule.UnweightedGroundRule

getRule() - Method in interface org.linqs.psl.model.rule.WeightedGroundRule

getRules() - Method in class org.linqs.psl.model.Model

getRVACount() - Method in class org.linqs.psl.database.atom.AtomCache

getSelectivity(String) - Method in class org.linqs.psl.database.rdbms.TableStats

Get the selectivity (cardinality / total rows) of a specific column.

getShort(String, short) - Static method in class org.linqs.psl.config.Config

getShort(String, Short) - Static method in class org.linqs.psl.config.Config

getSQL(Formula) - Method in class org.linqs.psl.database.rdbms.Formula2SQL

getSQL() - Method in class org.linqs.psl.database.rdbms.RawQuery

getString(String, String) - Static method in class org.linqs.psl.config.Config

getString() - Method in class org.linqs.psl.config.Option

getStringAggregate(String, String, boolean) - Method in interface org.linqs.psl.database.rdbms.driver.DatabaseDriver

Get a string aggregating expression (one that would appear in the SELECT clause of a grouping query.

getStringAggregate(String, String, boolean) - Method in class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver

getStringAggregate(String, String, boolean) - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver

getSummationMapping() - Method in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression

getSummationVariable() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Cardinality

getSummationVariables() - Method in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression

getSurrogateKeyColumnDefinition(String) - Method in interface org.linqs.psl.database.rdbms.driver.DatabaseDriver

Get the SQL definition for a primary, surrogate (auto-increment) key for use in a CREATE TABLE statement.

getSurrogateKeyColumnDefinition(String) - Method in class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver

getSurrogateKeyColumnDefinition(String) - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver

getSystemTempDir() - Static method in class org.linqs.psl.util.SystemUtils

getTableAliases() - Method in class org.linqs.psl.database.rdbms.Formula2SQL

getTableStats(PredicateInfo) - Method in interface org.linqs.psl.database.rdbms.driver.DatabaseDriver

Get some statistics for a table.

getTableStats(PredicateInfo) - Method in class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver

getTableStats(PredicateInfo) - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver

getTableStats(DatabaseDriver) - Method in class org.linqs.psl.database.rdbms.PredicateInfo

getTempDir(String) - Static method in class org.linqs.psl.util.SystemUtils

Get a temp dir (path) that is unique to this user/host/prefix.

getTerm(int) - Method in class org.linqs.psl.reasoner.function.GeneralFunction

getTermPagePath(int) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

getTerms(GroundRule) - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore

getTermStore() - Method in class org.linqs.psl.application.inference.InferenceApplication

getThreadObject(String) - Static method in class org.linqs.psl.util.Parallel

getThreshold() - Method in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator

getThreshold() - Method in class org.linqs.psl.evaluation.statistics.RankingEvaluator

getTotalWeightedCompatibility(Iterable<WeightedGroundRule>) - Static method in class org.linqs.psl.grounding.GroundRules

Sums the total weighted compatibility (1 - incompatibility) of an iterable container of GroundCompatibilityRules.

getTotalWeightedIncompatibility(Iterable<WeightedGroundRule>) - Static method in class org.linqs.psl.grounding.GroundRules

Sums the total weighted incompatibility of an iterable container of GroundCompatibilityRules.

getType(Constant) - Static method in enum org.linqs.psl.model.term.ConstantType

getType(Variable) - Method in class org.linqs.psl.model.term.VariableTypeMap

Returns the type of a given variable.

getTypeName(ConstantType) - Method in interface org.linqs.psl.database.rdbms.driver.DatabaseDriver

Get the type name for each argument type.

getTypeName(ConstantType) - Method in class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver

getTypeName(ConstantType) - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver

getUnboundVariables() - Method in class org.linqs.psl.model.formula.FormulaAnalysis.DNFClause

Returns any unbound variables.

getUnlogged() - Method in class org.linqs.psl.config.Option

getUnloggedProperty(String) - Static method in class org.linqs.psl.config.Config

Get a property, but don't log the access.

getUpsert(String, String[], String[]) - Method in interface org.linqs.psl.database.rdbms.driver.DatabaseDriver

Get the SQL for an upsert (merge) on the specified table and columns.

getUpsert(String, String[], String[]) - Method in class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver

getUpsert(String, String[], String[]) - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver

getUsername() - Static method in class org.linqs.psl.util.SystemUtils

getValue() - Method in class org.linqs.psl.model.atom.GroundAtom

getValue(ReadableDatabase, Constant...) - Method in interface org.linqs.psl.model.function.ExternalFunction

getValue(RandomVariableAtom) - Method in class org.linqs.psl.model.predicate.model.ModelPredicate

getValue(RandomVariableAtom, int, int) - Method in class org.linqs.psl.model.predicate.model.SupportingModel

Get the value for the specified atom.

getValue(RandomVariableAtom) - Method in class org.linqs.psl.model.predicate.model.SupportingModel

getValue(Map<SummationVariable, Integer>) - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Add

getValue(Map<SummationVariable, Integer>) - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Cardinality

getValue(Map<SummationVariable, Integer>) - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Coefficient

Get the value of a coefficient (which may require a reqursive descent).

getValue(Map<SummationVariable, Integer>) - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.ConstantNumber

getValue(Map<SummationVariable, Integer>) - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Divide

getValue(Map<SummationVariable, Integer>) - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Max

getValue(Map<SummationVariable, Integer>) - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Min

getValue(Map<SummationVariable, Integer>) - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Multiply

getValue(Map<SummationVariable, Integer>) - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Subtract

getValue() - Method in class org.linqs.psl.model.term.Attribute

getValue() - Method in class org.linqs.psl.model.term.DoubleAttribute

getValue() - Method in class org.linqs.psl.model.term.IntegerAttribute

getValue() - Method in class org.linqs.psl.model.term.LongAttribute

getValue() - Method in class org.linqs.psl.model.term.StringAttribute

getValue() - Method in class org.linqs.psl.reasoner.admm.term.LocalVariable

getValue() - Method in class org.linqs.psl.reasoner.function.ConstraintTerm

getValue() - Method in interface org.linqs.psl.reasoner.function.FunctionTerm

Returns the term's value

getValue() - Method in class org.linqs.psl.reasoner.function.GeneralFunction

getValue(float[]) - Method in class org.linqs.psl.reasoner.function.GeneralFunction

Get the value of this sum, but using the values passed in place of non-constants for the term.

getValue(GroundAtom, float) - Method in class org.linqs.psl.reasoner.function.GeneralFunction

Get the value of the sum, but replace the value of a single RVA with the given value.

getVariable() - Method in class org.linqs.psl.model.rule.arithmetic.expression.SummationVariable

getVariable(int) - Method in class org.linqs.psl.reasoner.term.Hyperplane

getVariableIndex(V) - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore

getVariableIndex(RandomVariableAtom) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

getVariableIndex(V) - Method in interface org.linqs.psl.reasoner.term.VariableTermStore

Get the index that matches up to getVariableValues().

getVariableMap() - Method in interface org.linqs.psl.database.QueryResultIterable

Get the mapping between variables and their index in the results.

getVariableMap() - Method in class org.linqs.psl.database.rdbms.RDBMSResultList

getVariables() - Method in class org.linqs.psl.model.atom.Atom

Get all the variables used by this atom.

getVariables() - Method in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression

Get the non-summation variables.

getVariables() - Method in class org.linqs.psl.model.term.VariableTypeMap

Returns all variables in the hashmap.

getVariables() - Method in class org.linqs.psl.reasoner.admm.term.ADMMObjectiveTerm

Get the variables used in this term.

getVariables() - Method in class org.linqs.psl.reasoner.term.Hyperplane

getVariables() - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore

getVariables() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

getVariables() - Method in interface org.linqs.psl.reasoner.term.VariableTermStore

getVariableTypes() - Method in class org.linqs.psl.database.rdbms.RawQuery

getVariableValue(GroundAtom) - Method in enum org.linqs.psl.reasoner.InitialValue

Get the value that this enum represents.

getVariableValue(int) - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore

getVariableValue(int) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

getVariableValue(int) - Method in interface org.linqs.psl.reasoner.term.VariableTermStore

Get the variable for the given index.

getVariableValues() - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore

getVariableValues() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

getVariableValues() - Method in interface org.linqs.psl.reasoner.term.VariableTermStore

Get the truth values for variabe atoms.

getVolatilePagePath(int) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

getWaitTime() - Method in class org.linqs.psl.util.Parallel.Worker

getWeight() - Method in class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule

getWeight() - Method in class org.linqs.psl.model.rule.arithmetic.WeightedGroundArithmeticRule

getWeight() - Method in class org.linqs.psl.model.rule.logical.WeightedGroundLogicalRule

getWeight() - Method in class org.linqs.psl.model.rule.logical.WeightedLogicalRule

getWeight() - Method in interface org.linqs.psl.model.rule.WeightedGroundRule

Returns the Weight of this WeightedGroundRule.

getWeight() - Method in interface org.linqs.psl.model.rule.WeightedRule

getWeights(double[]) - Method in class org.linqs.psl.application.learning.weight.search.grid.BaseGridSearch

Get the weight configuration at the current location.

getWeights(double[]) - Method in class org.linqs.psl.application.learning.weight.search.grid.ContinuousRandomGridSearch

getWeights(double[]) - Method in class org.linqs.psl.application.learning.weight.search.grid.GridSearch

getWeights(double[]) - Method in class org.linqs.psl.application.learning.weight.search.grid.RankSearch

getWLA(String, List<Rule>, Database, Database) - Static method in class org.linqs.psl.application.learning.weight.WeightLearningApplication

Construct a weight learning application given the data.

getWorkTime() - Method in class org.linqs.psl.util.Parallel.Worker

getWritePartition() - Method in class org.linqs.psl.database.Database

GIT_COMMIT_SHORT - Static variable in class org.linqs.psl.config.Options

GIT_DIRTY - Static variable in class org.linqs.psl.config.Options

GIT_PROPS - Static variable in class org.linqs.psl.config.Config

GridSearch - Class in org.linqs.psl.application.learning.weight.search.grid

An exhaustive grid search for weights.

GridSearch(Model, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.GridSearch

GridSearch(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.GridSearch

ground(AtomManager, ResultList, int) - Method in class org.linqs.psl.model.atom.QueryAtom

ground(AtomManager, ResultList, int, Constant[]) - Method in class org.linqs.psl.model.atom.QueryAtom

Ground using the passed in buffer.

ground(AtomManager, ResultList, int, Constant[], boolean) - Method in class org.linqs.psl.model.atom.QueryAtom

ground(AtomManager, Constant[], Map<Variable, Integer>) - Method in class org.linqs.psl.model.atom.QueryAtom

ground(AtomManager, Constant[], Map<Variable, Integer>, Constant[]) - Method in class org.linqs.psl.model.atom.QueryAtom

ground(AtomManager, Constant[], Map<Variable, Integer>, Constant[], boolean) - Method in class org.linqs.psl.model.atom.QueryAtom

ground(Constant[], Map<Variable, Integer>, AtomManager, List<GroundRule>) - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule

ground(Constant[], Map<Variable, Integer>, AtomManager, List<GroundRule>) - Method in class org.linqs.psl.model.rule.logical.AbstractLogicalRule

ground(Constant[], Map<Variable, Integer>, AtomManager, List<GroundRule>) - Method in interface org.linqs.psl.model.rule.Rule

Get the formual that we can use for grounding.

groundAll(Model, AtomManager, GroundRuleStore) - Static method in class org.linqs.psl.grounding.Grounding

Ground all the given rules.

groundAll(List<Rule>, AtomManager, GroundRuleStore) - Static method in class org.linqs.psl.grounding.Grounding

Ground all the given rules.

groundAll(AtomManager, GroundRuleStore) - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule

groundAll(AtomManager, GroundRuleStore) - Method in class org.linqs.psl.model.rule.logical.AbstractLogicalRule

groundAll(QueryResultIterable, AtomManager, GroundRuleStore) - Method in class org.linqs.psl.model.rule.logical.AbstractLogicalRule

groundAll(AtomManager, GroundRuleStore) - Method in interface org.linqs.psl.model.rule.Rule

Adds all GroundRules to a GroundRuleStore using the AtomManager to instantiate ground atoms.

groundAllSerial(List<Rule>, AtomManager, GroundRuleStore) - Static method in class org.linqs.psl.grounding.Grounding

Ground all the given rules one at a time.

GroundAtom - Class in org.linqs.psl.model.atom

An Atom with only GroundTerms for arguments.

GroundAtom(Predicate, Constant[], float) - Constructor for class org.linqs.psl.model.atom.GroundAtom

groundFormulaInstance(List<GroundAtom>, List<GroundAtom>, short) - Method in class org.linqs.psl.model.rule.logical.AbstractLogicalRule

groundFormulaInstance(List<GroundAtom>, List<GroundAtom>, short) - Method in class org.linqs.psl.model.rule.logical.UnweightedLogicalRule

groundFormulaInstance(List<GroundAtom>, List<GroundAtom>, short) - Method in class org.linqs.psl.model.rule.logical.WeightedLogicalRule

Grounding - Class in org.linqs.psl.grounding

Static utilities for common Model-grounding tasks.

GROUNDING_REWRITE_QUERY - Static variable in class org.linqs.psl.config.Options

GROUNDING_SERIAL - Static variable in class org.linqs.psl.config.Options

GroundingOnlyPredicate - Class in org.linqs.psl.model.predicate

Commonly used FunctionalPredicates that get special treatment in PSL.

GroundRule - Interface in org.linqs.psl.model.rule

A function that either constrains or measures the compatibility of the values of GroundAtoms.

groundRule - Variable in class org.linqs.psl.reasoner.admm.term.ADMMObjectiveTerm

GroundRules - Class in org.linqs.psl.grounding

Static utilities for common GroundRule tasks.

GroundRules() - Constructor for class org.linqs.psl.grounding.GroundRules

groundRules - Variable in class org.linqs.psl.grounding.MemoryGroundRuleStore

groundRuleStore - Variable in class org.linqs.psl.application.inference.InferenceApplication

GroundRuleStore - Interface in org.linqs.psl.grounding

Container for a set of GroundRules.

GuidedRandomGridSearch - Class in org.linqs.psl.application.learning.weight.search.grid

Randomly search a some locations and then look around those locations.

GuidedRandomGridSearch(Model, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.GuidedRandomGridSearch

GuidedRandomGridSearch(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.GuidedRandomGridSearch

H

H2DatabaseDriver - Class in org.linqs.psl.database.rdbms.driver

H2DatabaseDriver(H2DatabaseDriver.Type, String, boolean) - Constructor for class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver

Constructor for the H2 database driver.

H2DatabaseDriver.Type - Enum in org.linqs.psl.database.rdbms.driver

hasAtom(StandardPredicate, Constant...) - Method in class org.linqs.psl.database.Database

hasAtom(StandardPredicate, Constant...) - Method in interface org.linqs.psl.database.ReadableDatabase

Check to see if a ground atom exists in the database.

hasCachedAtom(StandardPredicate, Constant...) - Method in class org.linqs.psl.database.Database

hasCachedAtom(QueryAtom) - Method in class org.linqs.psl.database.Database

Hash - Class in org.linqs.psl.util

Compute hash digests.

HASH_PREFIX - Static variable in class org.linqs.psl.database.rdbms.PredicateInfo

hashCode() - Method in class org.linqs.psl.database.Partition

hashcode - Variable in class org.linqs.psl.model.atom.Atom

hashCode() - Method in class org.linqs.psl.model.atom.Atom

hashCode() - Method in class org.linqs.psl.model.formula.AbstractBranchFormula

hashCode() - Method in class org.linqs.psl.model.formula.Implication

hashCode() - Method in class org.linqs.psl.model.formula.Negation

hashCode() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule

hashCode() - Method in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression

hashCode() - Method in class org.linqs.psl.model.rule.arithmetic.expression.SummationAtom

hashCode() - Method in class org.linqs.psl.model.rule.arithmetic.expression.SummationVariable

hashCode() - Method in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule

hashCode() - Method in class org.linqs.psl.model.rule.logical.AbstractLogicalRule

hashCode() - Method in class org.linqs.psl.model.term.DoubleAttribute

hashCode() - Method in class org.linqs.psl.model.term.IntegerAttribute

hashCode() - Method in class org.linqs.psl.model.term.LongAttribute

hashCode() - Method in class org.linqs.psl.model.term.StringAttribute

hashCode() - Method in interface org.linqs.psl.model.term.Term

hashCode() - Method in class org.linqs.psl.model.term.UniqueIntID

hashCode() - Method in class org.linqs.psl.model.term.UniqueStringID

hashCode() - Method in class org.linqs.psl.model.term.Variable

hashCode() - Method in class org.linqs.psl.reasoner.admm.term.LocalVariable

Hash by global identifier.

HashCode - Class in org.linqs.psl.util

A utility to help build hash codes for objects.

hasNext() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator

Get the next term.

hasNext() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator

Get the next term.

hasSummation() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule

hasThreadObject(String) - Static method in class org.linqs.psl.util.Parallel

hasVariable(Variable) - Method in class org.linqs.psl.model.term.VariableTypeMap

Returns whether the given variable exists in the hashmap.

head - Variable in class org.linqs.psl.model.formula.Implication

The fuzzy singleton that is the head of the rule

HingeLossTerm - Class in org.linqs.psl.reasoner.admm.term

ADMMReasoner objective term of the form
weight * max(coefficients^T * x - constant, 0) All coefficients must be non-zero.

HingeLossTerm(GroundRule, Hyperplane<LocalVariable>) - Constructor for class org.linqs.psl.reasoner.admm.term.HingeLossTerm

Hyperband - Class in org.linqs.psl.application.learning.weight.search

Hyperband.

Hyperband(Model, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.Hyperband

Hyperband(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.Hyperband

Hyperplane<E extends ReasonerLocalVariable> - Class in org.linqs.psl.reasoner.term

Information representing a raw hyperplane.

Hyperplane(Class<E>, int, float) - Constructor for class org.linqs.psl.reasoner.term.Hyperplane

Hyperplane(E[], float[], float, int) - Constructor for class org.linqs.psl.reasoner.term.Hyperplane

HYPERPLANE_TG_INVERT_NEGATIVE_WEIGHTS - Static variable in class org.linqs.psl.config.Options

HyperplaneTerm - Class in org.linqs.psl.reasoner.admm.term

Objective term for an ADMMReasoner that is based on a hyperplane in some way.

HyperplaneTerm(GroundRule, Hyperplane<LocalVariable>) - Constructor for class org.linqs.psl.reasoner.admm.term.HyperplaneTerm

HyperplaneTermGenerator<T extends ReasonerTerm,V extends ReasonerLocalVariable> - Class in org.linqs.psl.reasoner.term

A base term generator for terms that come from hyperplanes.

HyperplaneTermGenerator() - Constructor for class org.linqs.psl.reasoner.term.HyperplaneTermGenerator

I

id - Variable in class org.linqs.psl.util.Parallel.Worker

Implication - Class in org.linqs.psl.model.formula

Implication(Formula, Formula) - Constructor for class org.linqs.psl.model.formula.Implication

index(Connection, DatabaseDriver) - Method in class org.linqs.psl.database.rdbms.PredicateInfo

indexed() - Method in class org.linqs.psl.database.rdbms.PredicateInfo

indexOf(T[], T) - Static method in class org.linqs.psl.util.ArrayUtils

indexOf(T[], int, T) - Static method in class org.linqs.psl.util.ArrayUtils

Same semantics as List.indexOf().

indexOfReference(T[], T) - Static method in class org.linqs.psl.util.ArrayUtils

indexOfReference(T[], int, T) - Static method in class org.linqs.psl.util.ArrayUtils

Like indexOf(), but only checks for referential equality.

indexOfVariable(E) - Method in class org.linqs.psl.reasoner.term.Hyperplane

indexPredicates() - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore

inertia - Variable in class org.linqs.psl.application.learning.weight.VotedPerceptron

inference() - Method in class org.linqs.psl.application.inference.InferenceApplication

Alias for inference() with committing atoms.

inference(boolean, boolean) - Method in class org.linqs.psl.application.inference.InferenceApplication

Minimize the total weighted incompatibility of the atoms according to the rules, and optionally commit the updated atoms back to the database.

inference - Variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication

INFERENCE_GRS - Static variable in class org.linqs.psl.config.Options

INFERENCE_INITIAL_VARIABLE_VALUE - Static variable in class org.linqs.psl.config.Options

INFERENCE_NORMALIZE_WEIGHTS - Static variable in class org.linqs.psl.config.Options

INFERENCE_REASONER - Static variable in class org.linqs.psl.config.Options

INFERENCE_RELAX - Static variable in class org.linqs.psl.config.Options

INFERENCE_RELAX_MULTIPLIER - Static variable in class org.linqs.psl.config.Options

INFERENCE_RELAX_SQUARED - Static variable in class org.linqs.psl.config.Options

INFERENCE_TG - Static variable in class org.linqs.psl.config.Options

INFERENCE_TS - Static variable in class org.linqs.psl.config.Options

InferenceApplication - Class in org.linqs.psl.application.inference

All the tools necessary to perform infernce.

InferenceApplication(List<Rule>, Database) - Constructor for class org.linqs.psl.application.inference.InferenceApplication

InferenceApplication(List<Rule>, Database, boolean) - Constructor for class org.linqs.psl.application.inference.InferenceApplication

init() - Static method in class org.linqs.psl.config.Config

(Re)create and populate the initial config.

init(boolean, boolean, Predicate, Term[]) - Method in class org.linqs.psl.model.atom.Atom

init(int) - Method in class org.linqs.psl.util.Parallel.Worker

Called before any work is given.

initForOptimization() - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore

initForOptimization() - Method in class org.linqs.psl.reasoner.term.MemoryTermStore

initForOptimization() - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore

initForOptimization() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

initForOptimization() - Method in interface org.linqs.psl.reasoner.term.TermStore

A notification by the Reasoner that optimization is about to begin.

initGroundModel() - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication

Initialize all the infrastructure dealing with the ground model.

initGroundModel(InferenceApplication, TrainingMap) - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication

Pass in all the ground model infrastructure.

INITIAL_PATH_CACHE_SIZE - Static variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

initialIterationComplete(int, int, ByteBuffer, ByteBuffer) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

A callback for the initial round iterator.

initialize() - Method in class org.linqs.psl.application.inference.InferenceApplication

Get objects ready for inference.

initializeAtoms() - Method in class org.linqs.psl.application.inference.InferenceApplication

Set all the random variable atoms to the initial value for this inference application.

initialRound - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

initialValue - Variable in class org.linqs.psl.application.inference.InferenceApplication

InitialValue - Enum in org.linqs.psl.reasoner

An enum that represents the initial value a variable should take.

InitialWeightGridSearch - Class in org.linqs.psl.application.learning.weight.search.grid

GridSearch over the initial weights and then run weight learning like normal.

InitialWeightGridSearch(Model, WeightLearningApplication, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.InitialWeightGridSearch

InitialWeightGridSearch(List<Rule>, WeightLearningApplication, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.InitialWeightGridSearch

The WeightLearningApplication should not have had initGroundModel() called yet.

InitialWeightHyperband - Class in org.linqs.psl.application.learning.weight.search

Hyperband, but the weights chosen are used as initial weights for further weight learning.

InitialWeightHyperband(Model, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.InitialWeightHyperband

InitialWeightHyperband(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.InitialWeightHyperband

InitialWeightRandomGridSearch - Class in org.linqs.psl.application.learning.weight.search.grid

Like InitialWeightGridSearch, but use random grid search instead of exhaustive.

InitialWeightRandomGridSearch(Model, WeightLearningApplication, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.InitialWeightRandomGridSearch

InitialWeightRandomGridSearch(List<Rule>, WeightLearningApplication, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.InitialWeightRandomGridSearch

InitialWeightRankSearch - Class in org.linqs.psl.application.learning.weight.search.grid

RankSearch over the initial weights and then run weight learning like normal.

InitialWeightRankSearch(Model, WeightLearningApplication, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.InitialWeightRankSearch

InitialWeightRankSearch(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.InitialWeightRankSearch

InitialWeightRankSearch(List<Rule>, WeightLearningApplication, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.InitialWeightRankSearch

The WeightLearningApplication should not have had initGroundModel() called yet.

inMPEState - Variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication

Flags to track if the current variable configuration is an MPE state.

insert(Object...) - Method in class org.linqs.psl.database.loading.Inserter

Insert a single object using the default truth value.

insertAll(List<List<Object>>) - Method in class org.linqs.psl.database.loading.Inserter

Insert several objects using the default truth value.

insertAll(List<List<Object>>) - Method in class org.linqs.psl.database.rdbms.RDBMSInserter

insertAllValues(List<Double>, List<List<Object>>) - Method in class org.linqs.psl.database.loading.Inserter

Insert several objects using the specified truth values.

insertAllValues(List<Double>, List<List<Object>>) - Method in class org.linqs.psl.database.rdbms.RDBMSInserter

Inserter - Class in org.linqs.psl.database.loading

Inserter(int) - Constructor for class org.linqs.psl.database.loading.Inserter

insertValue(double, Object...) - Method in class org.linqs.psl.database.loading.Inserter

Insert a single object using the specified truth value.

inspectLocation(double[]) - Method in class org.linqs.psl.application.learning.weight.search.grid.BaseGridSearch

Inspect the location defined by the given weights and give back its score (lower is better).

inspectLocation(double[]) - Method in class org.linqs.psl.application.learning.weight.search.grid.InitialWeightGridSearch

inspectLocation(double[]) - Method in class org.linqs.psl.application.learning.weight.search.grid.InitialWeightRandomGridSearch

inspectLocation(double[]) - Method in class org.linqs.psl.application.learning.weight.search.grid.InitialWeightRankSearch

instantiateNegatedGroundRule(Formula, List<GroundAtom>, List<GroundAtom>, String) - Method in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule

instantiateNegatedGroundRule(Formula, List<GroundAtom>, List<GroundAtom>, String) - Method in class org.linqs.psl.model.rule.logical.UnweightedGroundLogicalRule

instantiateNegatedGroundRule(Formula, List<GroundAtom>, List<GroundAtom>, String) - Method in class org.linqs.psl.model.rule.logical.WeightedGroundLogicalRule

instantiateObservedAtom(Predicate, Constant[], float) - Method in class org.linqs.psl.database.atom.AtomCache

Instantiates an ObservedAtom and stores it in this AtomCache.

instantiateRandomVariableAtom(StandardPredicate, Constant[], float) - Method in class org.linqs.psl.database.atom.AtomCache

Instantiates a RandomVariableAtom and stores it in this AtomCache.

IntegerAttribute - Class in org.linqs.psl.model.term

An Attribute that encapsulates an Integer.

IntegerAttribute(Integer) - Constructor for class org.linqs.psl.model.term.IntegerAttribute

Constructs an Integer attribute from an Integer

internalInference() - Method in class org.linqs.psl.application.inference.InferenceApplication

The implementation of the full inference by each class.

internalInference() - Method in class org.linqs.psl.application.inference.mpe.LazyMPEInference

inverse() - Method in class org.linqs.psl.util.FloatMatrix

Compute the inversion of this matrix.

isBlock() - Method in class org.linqs.psl.model.predicate.StandardPredicate

isClosed(StandardPredicate) - Method in class org.linqs.psl.database.atom.AtomManager

Calls ReadableDatabase.isClosed(StandardPredicate) on the encapsulated Database.

isClosed(StandardPredicate) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase

isClosed(StandardPredicate) - Method in interface org.linqs.psl.database.ReadableDatabase

Returns whether a StandardPredicate is closed in this Database.

isConstant() - Method in class org.linqs.psl.model.atom.ObservedAtom

isConstant() - Method in class org.linqs.psl.model.atom.RandomVariableAtom

isConstant() - Method in interface org.linqs.psl.reasoner.function.FunctionTerm

Returns whether the term is constant.

isConstant() - Method in class org.linqs.psl.reasoner.function.GeneralFunction

isGround() - Method in class org.linqs.psl.model.formula.FormulaAnalysis.DNFClause

isHigherRepBetter() - Method in class org.linqs.psl.evaluation.statistics.CategoricalEvaluator

isHigherRepBetter() - Method in class org.linqs.psl.evaluation.statistics.ContinuousEvaluator

isHigherRepBetter() - Method in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator

isHigherRepBetter() - Method in class org.linqs.psl.evaluation.statistics.Evaluator

Is a higher value for the current representative metric better?

isHigherRepBetter() - Method in class org.linqs.psl.evaluation.statistics.RankingEvaluator

isInstance(Constant) - Method in enum org.linqs.psl.model.term.ConstantType

Returns whether a GroundTerm is of the type identified by this ArgumentType

isLinear() - Method in class org.linqs.psl.model.atom.GroundAtom

isLinear() - Method in interface org.linqs.psl.reasoner.function.FunctionTerm

Returns whether the term is linear.

isLinear() - Method in class org.linqs.psl.reasoner.function.GeneralFunction

isLoaded() - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore

isLoaded() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

isLoaded() - Method in interface org.linqs.psl.reasoner.term.VariableTermStore

Is the term store loaded, and can it give an accurate term and variable count.

isNonNegative() - Method in class org.linqs.psl.reasoner.function.GeneralFunction

isQueriable() - Method in class org.linqs.psl.model.formula.FormulaAnalysis.DNFClause

isSquared() - Method in class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule

isSquared() - Method in class org.linqs.psl.model.rule.arithmetic.WeightedGroundArithmeticRule

isSquared() - Method in class org.linqs.psl.model.rule.logical.WeightedGroundLogicalRule

isSquared() - Method in class org.linqs.psl.model.rule.logical.WeightedLogicalRule

isSquared() - Method in interface org.linqs.psl.model.rule.WeightedGroundRule

isSquared() - Method in interface org.linqs.psl.model.rule.WeightedRule

isSquared() - Method in class org.linqs.psl.reasoner.function.GeneralFunction

isValid() - Method in class org.linqs.psl.database.rdbms.SelectivityHistogram

A histogram is not valid until either addHistogramBounds() or addHistogramExact() is called.

isWeighted() - Method in class org.linqs.psl.model.rule.arithmetic.UnweightedArithmeticRule

isWeighted() - Method in class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule

isWeighted() - Method in class org.linqs.psl.model.rule.logical.UnweightedLogicalRule

isWeighted() - Method in class org.linqs.psl.model.rule.logical.WeightedLogicalRule

isWeighted() - Method in interface org.linqs.psl.model.rule.Rule

isZero(double) - Static method in class org.linqs.psl.util.MathUtils

isZero(double, double) - Static method in class org.linqs.psl.util.MathUtils

isZero(float) - Static method in class org.linqs.psl.util.MathUtils

isZero(float, float) - Static method in class org.linqs.psl.util.MathUtils

iterationComplete() - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore

iterationComplete() - Method in class org.linqs.psl.reasoner.term.MemoryTermStore

iterationComplete() - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore

iterationComplete() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

iterationComplete() - Method in interface org.linqs.psl.reasoner.term.TermStore

A notification by the Reasoner that a single iteration is complete.

iterations - Variable in class org.linqs.psl.util.Parallel.RunTimings

iterator() - Method in class org.linqs.psl.database.rdbms.RDBMSResultList

iterator() - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore

iterator() - Method in class org.linqs.psl.reasoner.term.MemoryTermStore

iterator() - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore

iterator() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

IteratorUtils - Class in org.linqs.psl.util

Various static iterator/iterable utilities.

IteratorUtils.FilterFunction<T> - Interface in org.linqs.psl.util

IteratorUtils.MapFunction<T,S> - Interface in org.linqs.psl.util

J

join(SelectivityHistogram<T>) - Method in class org.linqs.psl.database.rdbms.SelectivityHistogram

Get a new histogram that represents the join of this histogram with another.

join(Iterable<? extends T>...) - Static method in class org.linqs.psl.util.IteratorUtils

Get an iterator that iterates over all the given iterables in whatever iteration order each provides.

join(char, List<? extends Object>) - Static method in class org.linqs.psl.util.ListUtils

join(String, List<? extends Object>) - Static method in class org.linqs.psl.util.ListUtils

join(char, Object...) - Static method in class org.linqs.psl.util.StringUtils

join(String, Object...) - Static method in class org.linqs.psl.util.StringUtils

join(char, int...) - Static method in class org.linqs.psl.util.StringUtils

join(String, int...) - Static method in class org.linqs.psl.util.StringUtils

join(char, long...) - Static method in class org.linqs.psl.util.StringUtils

join(String, long...) - Static method in class org.linqs.psl.util.StringUtils

join(char, float...) - Static method in class org.linqs.psl.util.StringUtils

join(String, float...) - Static method in class org.linqs.psl.util.StringUtils

join(char, double...) - Static method in class org.linqs.psl.util.StringUtils

join(String, double...) - Static method in class org.linqs.psl.util.StringUtils

K

keep(T) - Method in interface org.linqs.psl.util.IteratorUtils.FilterFunction

kernel(FloatMatrix, FloatMatrix) - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel

The actual kernel computation.

kernel(float[], float[], float[], float[], FloatMatrix, FloatMatrix) - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel

Compute the kernel, but use buffers provided by the caller.

kernel(float[], float[]) - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel

Compute the kernels, but allocate new buffer for the computation.

kernel(FloatMatrix, FloatMatrix) - Method in class org.linqs.psl.application.learning.weight.bayesian.SquaredExpKernel

L

l1Regularization - Variable in class org.linqs.psl.application.learning.weight.VotedPerceptron

l2Regularization - Variable in class org.linqs.psl.application.learning.weight.VotedPerceptron

labelArgumentIndexes - Variable in class org.linqs.psl.model.predicate.model.SupportingModel

The indexes of this predicate that compose the label ID.

labelIndex - Variable in class org.linqs.psl.model.predicate.model.SupportingModel.AtomIndexes

labelIndexMapping - Variable in class org.linqs.psl.model.predicate.model.SupportingModel

Map the ID for a label to its index in the output layer.

LAM_ACTIVATION_THRESHOLD - Static variable in class org.linqs.psl.config.Options

lapack_sgesv(FloatMatrix) - Method in class org.linqs.psl.util.FloatMatrix

Call sgesv from LAPACK.

lapack_spotrf(boolean) - Method in class org.linqs.psl.util.FloatMatrix

Call spotrf from LAPACK.

LAZY_INFERENCE_MAX_ROUNDS - Static variable in class org.linqs.psl.config.Options

LAZY_PARTITION_ID - Static variable in class org.linqs.psl.database.Partition

When grounding with lazy atoms, we will initially set their partition value to this so that we can tell them apart.

LazyAtomManager - Class in org.linqs.psl.database.atom

A persisted atom manager that will keep track of atoms that it returns, but that don't actually exist (lazy atoms).

LazyAtomManager(Database) - Constructor for class org.linqs.psl.database.atom.LazyAtomManager

LazyMPEInference - Class in org.linqs.psl.application.inference.mpe

Performs MPE inference (see MPEInference), but does not require all ground atoms to be specified ahead of time.

LazyMPEInference(List<Rule>, Database) - Constructor for class org.linqs.psl.application.inference.mpe.LazyMPEInference

learn() - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication

Learns new weights.

length() - Method in class org.linqs.psl.model.formula.AbstractBranchFormula

LinearConstraintTerm - Class in org.linqs.psl.reasoner.admm.term

ADMMReasoner objective term of the form: (0 if coefficients^T * x OP constant) or (infinity otherwise).

LinearConstraintTerm(GroundRule, Hyperplane<LocalVariable>, FunctionComparator) - Constructor for class org.linqs.psl.reasoner.admm.term.LinearConstraintTerm

LinearLossTerm - Class in org.linqs.psl.reasoner.admm.term

ADMMReasoner objective term of the form
weight * coefficients^T * x

ListUtils - Class in org.linqs.psl.util

Various static List utilities.

load(Map<String, String>, String) - Method in class org.linqs.psl.model.predicate.model.SupportingModel

Load the model from some configuration (that may include paths).

loadDelimitedData(String) - Method in class org.linqs.psl.database.loading.Inserter

Load data without a truth value from a file.

loadDelimitedData(String, String) - Method in class org.linqs.psl.database.loading.Inserter

loadDelimitedDataAutomatic(String) - Method in class org.linqs.psl.database.loading.Inserter

Peek at the first line and then choose loadDelimitedData() or loadDelimitedDataTruth().

loadDelimitedDataAutomatic(String, String) - Method in class org.linqs.psl.database.loading.Inserter

loadDelimitedDataTruth(String) - Method in class org.linqs.psl.database.loading.Inserter

Load data with a truth value from a file.

loadDelimitedDataTruth(String, String) - Method in class org.linqs.psl.database.loading.Inserter

loadFeatures(String) - Method in class org.linqs.psl.model.predicate.model.SupportingModel

Load the file that maps entities to features.

loadLabels(String) - Method in class org.linqs.psl.model.predicate.model.SupportingModel

Load the file that defines the order that labels will appear.

loadModel(Map<String, String>, String) - Method in class org.linqs.psl.model.predicate.model.ModelPredicate

Load a supporting model.

loadResource(InputStream, String) - Static method in class org.linqs.psl.config.Config

loadResource(String) - Static method in class org.linqs.psl.config.Config

LocalVariable - Class in org.linqs.psl.reasoner.admm.term

The local context of a variable.

LocalVariable(int, float) - Constructor for class org.linqs.psl.reasoner.admm.term.LocalVariable

In the context of ADMM, local variables should be initialized with the initial value of the global variable they are tracking.

logDiskRead(long) - Static method in class org.linqs.psl.util.RuntimeStats

Tell the RuntimeStats about an io operation.

logDiskWrite(long) - Static method in class org.linqs.psl.util.RuntimeStats

Tell the RuntimeStats about an io operation.

LongAttribute - Class in org.linqs.psl.model.term

An Attribute that encapsulates a Double.

LongAttribute(Long) - Constructor for class org.linqs.psl.model.term.LongAttribute

Constructs a Double attribute from a Double

looksLikeNegativePrior() - Method in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression

M

mae() - Method in class org.linqs.psl.evaluation.statistics.ContinuousEvaluator

main(String[]) - Static method in class org.linqs.psl.application.learning.weight.maxlikelihood.SimplexSampler

main(String[]) - Static method in class org.linqs.psl.config.Options

makeGroundRule(float[], GroundAtom[], FunctionComparator, float) - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule

makeGroundRule(List<Float>, List<GroundAtom>, FunctionComparator, float) - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule

makeGroundRule(float[], GroundAtom[], FunctionComparator, float) - Method in class org.linqs.psl.model.rule.arithmetic.UnweightedArithmeticRule

makeGroundRule(List<Float>, List<GroundAtom>, FunctionComparator, float) - Method in class org.linqs.psl.model.rule.arithmetic.UnweightedArithmeticRule

makeGroundRule(float[], GroundAtom[], FunctionComparator, float) - Method in class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule

makeGroundRule(List<Float>, List<GroundAtom>, FunctionComparator, float) - Method in class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule

makePath(String, String) - Static method in class org.linqs.psl.model.predicate.model.SupportingModel

Construct a path to the given file relative to the data file.

manualLabels - Variable in class org.linqs.psl.model.predicate.model.SupportingModel

Labels manually set by the reasoner to use for fitting.

map(Iterable<T>, IteratorUtils.MapFunction<T, S>) - Static method in class org.linqs.psl.util.IteratorUtils

Given an Iterable, return a new Iterable that invokes the function once on each item.

map(T) - Method in interface org.linqs.psl.util.IteratorUtils.MapFunction

MathUtils - Class in org.linqs.psl.util

Various static math utilities.

Max - Class in org.linqs.psl.model.rule.arithmetic.expression.coefficient

Max(Coefficient, Coefficient) - Constructor for class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Max

MAX_RAND_INT_VAL - Static variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior

MAX_TABLE_NAME_LENGTH - Static variable in class org.linqs.psl.database.rdbms.PredicateInfo

MaxLikelihoodMPE - Class in org.linqs.psl.application.learning.weight.maxlikelihood

Learns weights by optimizing the log likelihood of the data using the voted perceptron algorithm.

MaxLikelihoodMPE(Model, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.maxlikelihood.MaxLikelihoodMPE

MaxLikelihoodMPE(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.maxlikelihood.MaxLikelihoodMPE

maxNumLocations - Variable in class org.linqs.psl.application.learning.weight.search.grid.BaseGridSearch

The number of actual possible locations.

maxNumSteps - Variable in class org.linqs.psl.application.learning.weight.VotedPerceptron

MaxPiecewisePseudoLikelihood - Class in org.linqs.psl.application.learning.weight.maxlikelihood

Learns weights by optimizing the piecewise-pseudo-log-likelihood of the data using the voted perceptron algorithm.

MaxPiecewisePseudoLikelihood(Model, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPiecewisePseudoLikelihood

MaxPiecewisePseudoLikelihood(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPiecewisePseudoLikelihood

maxRounds - Variable in class org.linqs.psl.application.inference.mpe.LazyMPEInference

md5(String) - Static method in class org.linqs.psl.util.Hash

md5(byte[]) - Static method in class org.linqs.psl.util.Hash

MEAN - Static variable in class org.linqs.psl.application.learning.weight.search.Hyperband

MEMORY_TS_INITIAL_SIZE - Static variable in class org.linqs.psl.config.Options

MEMORY_VTS_DEFAULT_SIZE - Static variable in class org.linqs.psl.config.Options

MEMORY_VTS_SHUFFLE - Static variable in class org.linqs.psl.config.Options

MemoryGroundRuleStore - Class in org.linqs.psl.grounding

A simple GroundRuleStore that just stores each GroundRule in memory.

MemoryGroundRuleStore() - Constructor for class org.linqs.psl.grounding.MemoryGroundRuleStore

MemoryTermStore<T extends ReasonerTerm> - Class in org.linqs.psl.reasoner.term

MemoryTermStore() - Constructor for class org.linqs.psl.reasoner.term.MemoryTermStore

MemoryTermStore(int) - Constructor for class org.linqs.psl.reasoner.term.MemoryTermStore

MemoryVariableTermStore<T extends ReasonerTerm,V extends ReasonerLocalVariable> - Class in org.linqs.psl.reasoner.term

A general TermStore that handles terms and variables all in memory.

MemoryVariableTermStore() - Constructor for class org.linqs.psl.reasoner.term.MemoryVariableTermStore

METADATA_TABLENAME - Static variable in class org.linqs.psl.database.rdbms.DataStoreMetadata

Min - Class in org.linqs.psl.model.rule.arithmetic.expression.coefficient

Min(Coefficient, Coefficient) - Constructor for class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Min

MIN_BRACKET_SIZE - Static variable in class org.linqs.psl.application.learning.weight.search.Hyperband

MIN_BUDGET_PROPORTION - Static variable in class org.linqs.psl.application.learning.weight.search.Hyperband

minimize(float, float[]) - Method in class org.linqs.psl.reasoner.admm.term.ADMMObjectiveTerm

Updates x to the solution of
argmin f(x) + stepSize / 2 * \|x - z + y / stepSize \|_2^2
for the objective term f(x)

minimize(float, float[]) - Method in class org.linqs.psl.reasoner.admm.term.HingeLossTerm

minimize(float, float[]) - Method in class org.linqs.psl.reasoner.admm.term.LinearConstraintTerm

minimize(float, float[]) - Method in class org.linqs.psl.reasoner.admm.term.LinearLossTerm

minimize(float, float[]) - Method in class org.linqs.psl.reasoner.admm.term.SquaredHingeLossTerm

minimize(float, float[]) - Method in class org.linqs.psl.reasoner.admm.term.SquaredLinearLossTerm

minimize(boolean, float[]) - Method in class org.linqs.psl.reasoner.dcd.term.DCDObjectiveTerm

minimize(int, float[]) - Method in class org.linqs.psl.reasoner.sgd.term.SGDObjectiveTerm

Minimize the term by changing the random variables and return how much the random variables were moved by.

minWeightedSquaredHyperplane(float, float[]) - Method in class org.linqs.psl.reasoner.admm.term.SquaredHyperplaneTerm

Minimizes the weighted, squared hyperplane
argmin weight * (coefficients^T * x - constant)^2 + stepSize/2 * \|x - z + y / stepSize \|_2^2

Model - Class in org.linqs.psl.model

A probabilistic soft logic model.

Model() - Constructor for class org.linqs.psl.model.Model

model - Variable in class org.linqs.psl.model.predicate.model.ModelPredicate

MODEL_PREDICATE_BATCH_SIZE - Static variable in class org.linqs.psl.config.Options

MODEL_PREDICATE_ENTITY_ARGS - Static variable in class org.linqs.psl.config.Options

MODEL_PREDICATE_ITERATIONS - Static variable in class org.linqs.psl.config.Options

MODEL_PREDICATE_LABEL_ARGS - Static variable in class org.linqs.psl.config.Options

ModelApplication - Interface in org.linqs.psl.application

ModelPredicate - Class in org.linqs.psl.model.predicate.model

A predicate that is backed by some supporting model.

ModelPredicate(String, ConstantType[], SupportingModel) - Constructor for class org.linqs.psl.model.predicate.model.ModelPredicate

moveToWritePartition(StandardPredicate, int) - Method in class org.linqs.psl.database.rdbms.RDBMSDatabase

moveToWritePartition(StandardPredicate, int) - Method in interface org.linqs.psl.database.WritableDatabase

Move all ground atoms of a predicate/partition combination into the write partition.

MPEInference - Class in org.linqs.psl.application.inference.mpe

Infers the most-probable explanation (MPE) state of the RandomVariableAtoms persisted in a Database, according to the rules, given the Database's ObservedAtoms.

MPEInference(List<Rule>, Database, boolean) - Constructor for class org.linqs.psl.application.inference.mpe.MPEInference

MPEInference(List<Rule>, Database) - Constructor for class org.linqs.psl.application.inference.mpe.MPEInference

mse() - Method in class org.linqs.psl.evaluation.statistics.ContinuousEvaluator

mul(float) - Method in class org.linqs.psl.util.FloatMatrix

Scalar multiplication (not in-place).

mul(float, boolean) - Method in class org.linqs.psl.util.FloatMatrix

Scalar multiplication.

mul(FloatMatrix) - Method in class org.linqs.psl.util.FloatMatrix

Matrix multiplication without transposition or scaling.

mul(FloatMatrix, boolean, boolean, float) - Method in class org.linqs.psl.util.FloatMatrix

Matrix multiplication.

mul(FloatMatrix, FloatMatrix, boolean, boolean, float, float) - Method in class org.linqs.psl.util.FloatMatrix

Matrix multiplication.

Multiply - Class in org.linqs.psl.model.rule.arithmetic.expression.coefficient

Multiply(Coefficient, Coefficient) - Constructor for class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Multiply

mutableRules - Variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication

N

name() - Method in class org.linqs.psl.config.Option

name - Variable in class org.linqs.psl.model.rule.AbstractRule

NAME_KEY - Static variable in class org.linqs.psl.database.rdbms.DataStoreMetadata

negate() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule

negate() - Method in interface org.linqs.psl.model.rule.GroundRule

Negate this ground rule and get the corresponding ground rule(s).

negate() - Method in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule

Negating logical rules (a disjunction) will generate multiple other rules.

negatedDNF - Variable in class org.linqs.psl.model.rule.logical.AbstractLogicalRule

Negation - Class in org.linqs.psl.model.formula

This class implements fuzzy negation.

Negation(Formula) - Constructor for class org.linqs.psl.model.formula.Negation

negativeAUPRC() - Method in class org.linqs.psl.evaluation.statistics.RankingEvaluator

Returns area under the precision recall curve for the negative class.

negativePrecision() - Method in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator

negativeRecall() - Method in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator

negLiterals - Variable in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule

newIterable(Iterator<T>) - Static method in class org.linqs.psl.util.IteratorUtils

Make an Iterable from and Interator.

newObject(String) - Static method in class org.linqs.psl.util.Reflection

newObject(Class<?>) - Static method in class org.linqs.psl.util.Reflection

next() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator

next() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator

nextBoolean() - Static method in class org.linqs.psl.util.RandUtils

nextCachedTermIndex - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator

nextDouble() - Static method in class org.linqs.psl.util.RandUtils

nextFloat() - Static method in class org.linqs.psl.util.RandUtils

nextFloat(float, float) - Static method in class org.linqs.psl.util.RandUtils

nextGaussian() - Static method in class org.linqs.psl.util.RandUtils

nextInt() - Static method in class org.linqs.psl.util.RandUtils

Get an int in the range of a signed int.

nextInt(int) - Static method in class org.linqs.psl.util.RandUtils

Get an int in the range [0, max).

nextLong() - Static method in class org.linqs.psl.util.RandUtils

nextTerm - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator

nextTerm - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator

NonSymmetric - Static variable in class org.linqs.psl.model.predicate.GroundingOnlyPredicate

True if the first argument is less than the second.

norm1() - Method in class org.linqs.psl.util.FloatMatrix

Get the 1-norm (sum of absolute values).

norm2() - Method in class org.linqs.psl.util.FloatMatrix

Get the 2-norm (Euclidean norm) (square root of sum of squared values).

normalizeWeights - Variable in class org.linqs.psl.application.inference.InferenceApplication

normalizeWeights() - Method in class org.linqs.psl.application.inference.InferenceApplication

Normalize all weights to be in [0, 1].

NotEqual - Static variable in class org.linqs.psl.model.predicate.GroundingOnlyPredicate

True if arguments are not equal.

noWriteIterator() - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore

noWriteIterator() - Method in class org.linqs.psl.reasoner.term.MemoryTermStore

noWriteIterator() - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore

noWriteIterator() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

Get an iterator that goes over all the terms for only reading.

noWriteIterator() - Method in interface org.linqs.psl.reasoner.term.TermStore

Get an iterator over the terms in the store that does not write to disk.

numCols() - Method in class org.linqs.psl.util.FloatMatrix

numFeatures - Variable in class org.linqs.psl.model.predicate.model.SupportingModel

numLocations - Variable in class org.linqs.psl.application.learning.weight.search.grid.BaseGridSearch

The number of locations we will search.

numPages - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator

numPages - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator

numPages - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

numRows() - Method in class org.linqs.psl.util.FloatMatrix

numSteps - Variable in class org.linqs.psl.application.learning.weight.VotedPerceptron

O

objectiveBreak - Variable in class org.linqs.psl.reasoner.Reasoner

objectives - Variable in class org.linqs.psl.application.learning.weight.search.grid.BaseGridSearch

The objectives at each location.

ObservedAtom - Class in org.linqs.psl.model.atom

A GroundAtom with a fixed truth value.

ObservedAtom(Predicate, Constant[], float) - Constructor for class org.linqs.psl.model.atom.ObservedAtom

Instantiation of GrondAtoms should typically be left to the Database so it can maintain a cache.

observedDB - Variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication

observedIncompatibility - Variable in class org.linqs.psl.application.learning.weight.VotedPerceptron

ones(int, int) - Static method in class org.linqs.psl.util.FloatMatrix

Make a ones matrix.

optimize(TermStore) - Method in class org.linqs.psl.reasoner.admm.ADMMReasoner

optimize(TermStore) - Method in class org.linqs.psl.reasoner.dcd.DCDReasoner

optimize(TermStore) - Method in class org.linqs.psl.reasoner.ExecutableReasoner

optimize(TermStore) - Method in class org.linqs.psl.reasoner.Reasoner

Minimizes the total weighted incompatibility of the terms in the provided TermStore.

optimize(TermStore) - Method in class org.linqs.psl.reasoner.sgd.SGDReasoner

Option - Class in org.linqs.psl.config

A container for configuration options.

Option(String, boolean, String) - Constructor for class org.linqs.psl.config.Option

Option(String, String, String) - Constructor for class org.linqs.psl.config.Option

Option(String, int, String) - Constructor for class org.linqs.psl.config.Option

Option(String, int, String, int) - Constructor for class org.linqs.psl.config.Option

Option(String, long, String) - Constructor for class org.linqs.psl.config.Option

Option(String, long, String, int) - Constructor for class org.linqs.psl.config.Option

Option(String, float, String) - Constructor for class org.linqs.psl.config.Option

Option(String, float, String, int) - Constructor for class org.linqs.psl.config.Option

Option(String, double, String) - Constructor for class org.linqs.psl.config.Option

Option(String, double, String, int) - Constructor for class org.linqs.psl.config.Option

Option(String, Object, Class<?>, String, int) - Constructor for class org.linqs.psl.config.Option

Options - Class in org.linqs.psl.config

The canonical place to keep all configuration options.

org.linqs.psl.application - package org.linqs.psl.application

org.linqs.psl.application.inference - package org.linqs.psl.application.inference

org.linqs.psl.application.inference.mpe - package org.linqs.psl.application.inference.mpe

org.linqs.psl.application.learning.weight - package org.linqs.psl.application.learning.weight

org.linqs.psl.application.learning.weight.bayesian - package org.linqs.psl.application.learning.weight.bayesian

org.linqs.psl.application.learning.weight.maxlikelihood - package org.linqs.psl.application.learning.weight.maxlikelihood

org.linqs.psl.application.learning.weight.search - package org.linqs.psl.application.learning.weight.search

org.linqs.psl.application.learning.weight.search.grid - package org.linqs.psl.application.learning.weight.search.grid

org.linqs.psl.config - package org.linqs.psl.config

org.linqs.psl.database - package org.linqs.psl.database

org.linqs.psl.database.atom - package org.linqs.psl.database.atom

org.linqs.psl.database.loading - package org.linqs.psl.database.loading

org.linqs.psl.database.rdbms - package org.linqs.psl.database.rdbms

org.linqs.psl.database.rdbms.driver - package org.linqs.psl.database.rdbms.driver

org.linqs.psl.evaluation.statistics - package org.linqs.psl.evaluation.statistics

org.linqs.psl.grounding - package org.linqs.psl.grounding

org.linqs.psl.model - package org.linqs.psl.model

org.linqs.psl.model.atom - package org.linqs.psl.model.atom

org.linqs.psl.model.formula - package org.linqs.psl.model.formula

org.linqs.psl.model.function - package org.linqs.psl.model.function

org.linqs.psl.model.predicate - package org.linqs.psl.model.predicate

org.linqs.psl.model.predicate.model - package org.linqs.psl.model.predicate.model

org.linqs.psl.model.rule - package org.linqs.psl.model.rule

org.linqs.psl.model.rule.arithmetic - package org.linqs.psl.model.rule.arithmetic

org.linqs.psl.model.rule.arithmetic.expression - package org.linqs.psl.model.rule.arithmetic.expression

org.linqs.psl.model.rule.arithmetic.expression.coefficient - package org.linqs.psl.model.rule.arithmetic.expression.coefficient

org.linqs.psl.model.rule.logical - package org.linqs.psl.model.rule.logical

org.linqs.psl.model.term - package org.linqs.psl.model.term

org.linqs.psl.reasoner - package org.linqs.psl.reasoner

org.linqs.psl.reasoner.admm - package org.linqs.psl.reasoner.admm

org.linqs.psl.reasoner.admm.term - package org.linqs.psl.reasoner.admm.term

org.linqs.psl.reasoner.dcd - package org.linqs.psl.reasoner.dcd

org.linqs.psl.reasoner.dcd.term - package org.linqs.psl.reasoner.dcd.term

org.linqs.psl.reasoner.function - package org.linqs.psl.reasoner.function

org.linqs.psl.reasoner.sgd - package org.linqs.psl.reasoner.sgd

org.linqs.psl.reasoner.sgd.term - package org.linqs.psl.reasoner.sgd.term

org.linqs.psl.reasoner.term - package org.linqs.psl.reasoner.term

org.linqs.psl.reasoner.term.streaming - package org.linqs.psl.reasoner.term.streaming

org.linqs.psl.util - package org.linqs.psl.util

outputStats() - Static method in class org.linqs.psl.util.RuntimeStats

Ouput collected stats.

OVERALLOCATION_RATIO - Static variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator

P

pageAccessOrder - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator

pageDir - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

pageSize - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator

pageSize - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

pairedShuffle(List...) - Static method in class org.linqs.psl.util.RandUtils

Shuffle multiple lists, but keep the elements that share indexes together.

pairedShuffleIndexes(List<T>, int[]) - Static method in class org.linqs.psl.util.RandUtils

A version of pairedShuffle() optimized for very specific list types.

PAM_THROW_ACCESS_EXCEPTION - Static variable in class org.linqs.psl.config.Options

Parallel - Class in org.linqs.psl.util

Utilities to run operations in parallel.

Parallel.RunTimings - Class in org.linqs.psl.util

Parallel.Worker<T> - Class in org.linqs.psl.util

Extend this class for any work.

PARALLEL_NUM_THREADS - Static variable in class org.linqs.psl.config.Options

parentDataStore - Variable in class org.linqs.psl.database.Database

The backing data store that created this database.

parentStore - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator

parentStore - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator

parentWaitTimeMS - Variable in class org.linqs.psl.util.Parallel.RunTimings

Partition - Class in org.linqs.psl.database

Partition(int, String) - Constructor for class org.linqs.psl.database.Partition

Sole constructor.

PARTITION_COLUMN_NAME - Static variable in class org.linqs.psl.database.rdbms.PredicateInfo

PARTITION_NAMESPACE - Static variable in class org.linqs.psl.database.rdbms.DataStoreMetadata

pendingGroundRules - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator

permutations(int) - Static method in class org.linqs.psl.util.IteratorUtils

Get an iterator that gives all the permutations of the numbers 0 - size.

PersistedAccessException(RandomVariableAtom) - Constructor for exception org.linqs.psl.database.atom.PersistedAtomManager.PersistedAccessException

PersistedAtomManager - Class in org.linqs.psl.database.atom

Implements the AtomManager with a twist: this AtomManager will only return RandomVariableAtoms that were persisted in the Database at instantiation.

PersistedAtomManager(Database) - Constructor for class org.linqs.psl.database.atom.PersistedAtomManager

PersistedAtomManager(Database, boolean) - Constructor for class org.linqs.psl.database.atom.PersistedAtomManager

PersistedAtomManager(Database, boolean, InitialValue) - Constructor for class org.linqs.psl.database.atom.PersistedAtomManager

Constructs a PersistedAtomManager with a built-in set of all the database's persisted RandomVariableAtoms.

PersistedAtomManager.PersistedAccessException - Exception in org.linqs.psl.database.atom

point - Variable in class org.linqs.psl.reasoner.admm.term.HyperplaneTerm

positiveAUPRC() - Method in class org.linqs.psl.evaluation.statistics.RankingEvaluator

Returns area under the precision recall curve.

positivePrecision() - Method in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator

positiveRecall() - Method in class org.linqs.psl.evaluation.statistics.DiscreteEvaluator

posLiterals - Variable in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule

possibleWeights - Variable in class org.linqs.psl.application.learning.weight.search.grid.GridSearch

POSTGRES_HOST - Static variable in class org.linqs.psl.config.Options

POSTGRES_PASSWORD - Static variable in class org.linqs.psl.config.Options

POSTGRES_PORT - Static variable in class org.linqs.psl.config.Options

POSTGRES_STATS_PERCENTAGE - Static variable in class org.linqs.psl.config.Options

POSTGRES_USER - Static variable in class org.linqs.psl.config.Options

PostgreSQLDriver - Class in org.linqs.psl.database.rdbms.driver

PostgreSQL Connection Wrapper.

PostgreSQLDriver(String, boolean) - Constructor for class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver

PostgreSQLDriver(String, String, String, boolean) - Constructor for class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver

PostgreSQLDriver(String, String, String, String, String, boolean) - Constructor for class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver

PostgreSQLDriver(String, String, boolean) - Constructor for class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver

postInitGroundModel() - Method in class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPiecewisePseudoLikelihood

postInitGroundModel() - Method in class org.linqs.psl.application.learning.weight.search.grid.InitialWeightGridSearch

postInitGroundModel() - Method in class org.linqs.psl.application.learning.weight.search.grid.InitialWeightRandomGridSearch

postInitGroundModel() - Method in class org.linqs.psl.application.learning.weight.search.grid.InitialWeightRankSearch

postInitGroundModel() - Method in class org.linqs.psl.application.learning.weight.search.InitialWeightHyperband

postInitGroundModel() - Method in class org.linqs.psl.application.learning.weight.VotedPerceptron

postInitGroundModel() - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication

A convenient place for children to do additional ground model initialization.

powerset(int) - Static method in class org.linqs.psl.util.IteratorUtils

Get an iterator that will go through the powerset of the specified size.

predicate() - Method in class org.linqs.psl.database.rdbms.PredicateInfo

predicate - Variable in class org.linqs.psl.model.atom.Atom

Predicate - Class in org.linqs.psl.model.predicate

A relation that can be applied to Terms to form Atoms.

Predicate(String, ConstantType[]) - Constructor for class org.linqs.psl.model.predicate.Predicate

Predicate(String, ConstantType[], boolean) - Constructor for class org.linqs.psl.model.predicate.Predicate

predicate - Variable in class org.linqs.psl.model.rule.arithmetic.expression.SummationAtom

PREDICATE_TABLE_SUFFIX - Static variable in class org.linqs.psl.database.rdbms.PredicateInfo

PredicateInfo - Class in org.linqs.psl.database.rdbms

PredicateInfo(Predicate) - Constructor for class org.linqs.psl.database.rdbms.PredicateInfo

predictFnValAndStd(float[], List<GaussianProcessPrior.WeightConfig>) - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior

predictFnValAndStd, but no memory sharing.

predictFnValAndStd(float[], List<GaussianProcessPrior.WeightConfig>, float[], float[], float[], FloatMatrix, FloatMatrix, FloatMatrix, FloatMatrix) - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior

Do the prediction.

printInitialObj - Variable in class org.linqs.psl.reasoner.Reasoner

project(float, float[]) - Method in class org.linqs.psl.reasoner.admm.term.HyperplaneTerm

Finds the orthogonal projection onto the hyperplane
argmin stepSize/2 * \|x - z + y / stepSize \|_2^2
such that coefficients^T * x = constant.

PROJECT_PROPS - Static variable in class org.linqs.psl.config.Config

PROJECT_VERSION - Static variable in class org.linqs.psl.config.Options

PSL_CONFIG - Static variable in class org.linqs.psl.config.Config

PSL_CONFIG_DEFAULT - Static variable in class org.linqs.psl.config.Config

putThreadObject(String, Object) - Static method in class org.linqs.psl.util.Parallel

Q

QR_ALLOWED_STEP_INCREASE - Static variable in class org.linqs.psl.config.Options

QR_ALLOWED_TOTAL_INCREASE - Static variable in class org.linqs.psl.config.Options

QR_COST_ESTIMATOR - Static variable in class org.linqs.psl.config.Options

QueryAtom - Class in org.linqs.psl.model.atom

An Atom that can be used in a query, but does not have a truth value.

QueryAtom(Predicate, Term...) - Constructor for class org.linqs.psl.model.atom.QueryAtom

queryIterable - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator

QueryResultIterable - Interface in org.linqs.psl.database

queryResults - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator

QueryRewriter - Class in org.linqs.psl.database.rdbms

Try to rewrite a grounding query to make it more efficient.

QueryRewriter() - Constructor for class org.linqs.psl.database.rdbms.QueryRewriter

QueryRewriter.CostEstimator - Enum in org.linqs.psl.database.rdbms

The different methods for estimating the join cost.

R

RANDOM_SEED - Static variable in class org.linqs.psl.config.Options

randomConfiguration() - Method in class org.linqs.psl.application.learning.weight.search.grid.RandomGridSearch

RandomGridSearch - Class in org.linqs.psl.application.learning.weight.search.grid

A random grid search that searches a finite number of locations.

RandomGridSearch(Model, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.RandomGridSearch

RandomGridSearch(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.RandomGridSearch

randomizePageAccess - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

RandomVariableAtom - Class in org.linqs.psl.model.atom

A GroundAtom with a truth value which can be modified.

RandomVariableAtom(StandardPredicate, Constant[], float) - Constructor for class org.linqs.psl.model.atom.RandomVariableAtom

Instantiation of GrondAtoms should typically be left to the Database so it can maintain a cache.

RandUtils - Class in org.linqs.psl.util

The canonical source of randomness for all PSL core code.

RankingEvaluator - Class in org.linqs.psl.evaluation.statistics

Compute various ranking statistics.

RankingEvaluator() - Constructor for class org.linqs.psl.evaluation.statistics.RankingEvaluator

RankingEvaluator(double) - Constructor for class org.linqs.psl.evaluation.statistics.RankingEvaluator

RankingEvaluator(double, String) - Constructor for class org.linqs.psl.evaluation.statistics.RankingEvaluator

RankingEvaluator(double, RankingEvaluator.RepresentativeMetric) - Constructor for class org.linqs.psl.evaluation.statistics.RankingEvaluator

RankingEvaluator.RepresentativeMetric - Enum in org.linqs.psl.evaluation.statistics

RankSearch - Class in org.linqs.psl.application.learning.weight.search.grid

A grid seach-like method that searchs over the possible rankings of rules.

RankSearch(Model, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.RankSearch

RankSearch(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.search.grid.RankSearch

RawQuery - Class in org.linqs.psl.database.rdbms

A container for the information necessary to perform a raw SQL query.

RawQuery(RDBMSDatabase, Formula) - Constructor for class org.linqs.psl.database.rdbms.RawQuery

RawQuery(RDBMSDatabase, Formula, boolean) - Constructor for class org.linqs.psl.database.rdbms.RawQuery

RawQuery(RDBMSDatabase, DatabaseQuery) - Constructor for class org.linqs.psl.database.rdbms.RawQuery

RawQuery(String, Map<Variable, Integer>, VariableTypeMap) - Constructor for class org.linqs.psl.database.rdbms.RawQuery

rawToString() - Method in class org.linqs.psl.model.term.Constant

Get a string representation of the internal constant value.

rawToString() - Method in class org.linqs.psl.model.term.DoubleAttribute

rawToString() - Method in class org.linqs.psl.model.term.IntegerAttribute

rawToString() - Method in class org.linqs.psl.model.term.LongAttribute

rawToString() - Method in class org.linqs.psl.model.term.StringAttribute

rawToString() - Method in class org.linqs.psl.model.term.UniqueIntID

rawToString() - Method in class org.linqs.psl.model.term.UniqueStringID

RDBMS_FETCH_SIZE - Static variable in class org.linqs.psl.config.Options

RDBMSDatabase - Class in org.linqs.psl.database.rdbms

A view on the datastore with specific partitions activated.

RDBMSDatabase(RDBMSDataStore, Partition, Partition[], Set<StandardPredicate>) - Constructor for class org.linqs.psl.database.rdbms.RDBMSDatabase

RDBMSDataStore - Class in org.linqs.psl.database.rdbms

The RDMBSDataStore is an RDBMS implementation of the DataStore interface.

RDBMSDataStore(DatabaseDriver) - Constructor for class org.linqs.psl.database.rdbms.RDBMSDataStore

Returns an RDBMSDataStore that utilizes the connections returned by the DatabaseDriver.

RDBMSInserter - Class in org.linqs.psl.database.rdbms

An inserter that is aware of what predicate and partition it is inserting into.

RDBMSInserter(RDBMSDataStore, PredicateInfo, Partition) - Constructor for class org.linqs.psl.database.rdbms.RDBMSInserter

RDBMSResultList - Class in org.linqs.psl.database.rdbms

RDBMSResultList(int) - Constructor for class org.linqs.psl.database.rdbms.RDBMSResultList

read(ByteBuffer, ByteBuffer) - Method in class org.linqs.psl.reasoner.dcd.term.DCDObjectiveTerm

Assume the term that will be next read from the buffers.

read(ByteBuffer, ByteBuffer) - Method in class org.linqs.psl.reasoner.sgd.term.SGDObjectiveTerm

Assume the term that will be next read from the buffers.

ReadableDatabase - Interface in org.linqs.psl.database

A database for retrieving GroundAtoms.

readIDs - Variable in class org.linqs.psl.database.Database

readonly - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator

readPage(String, String) - Method in class org.linqs.psl.reasoner.dcd.term.DCDStreamingCacheIterator

readPage(String, String) - Method in class org.linqs.psl.reasoner.sgd.term.SGDStreamingCacheIterator

readPage(String, String) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator

Read a page and fill the termCache using freed terms from the termPool.

readPartitions - Variable in class org.linqs.psl.database.Database

The partition IDs that this database only reads from.

readResults(BufferedReader, TermStore) - Method in class org.linqs.psl.reasoner.ExecutableReasoner

reasoner - Variable in class org.linqs.psl.application.inference.InferenceApplication

Reasoner - Class in org.linqs.psl.reasoner

An oprimizer to minimize the total weighted incompatibility of the terms provided by a TermStore.

Reasoner() - Constructor for class org.linqs.psl.reasoner.Reasoner

REASONER_OBJECTIVE_BREAK - Static variable in class org.linqs.psl.config.Options

REASONER_PRINT_INITIAL_OBJECTIVE - Static variable in class org.linqs.psl.config.Options

REASONER_TOLERANCE - Static variable in class org.linqs.psl.config.Options

ReasonerLocalVariable - Interface in org.linqs.psl.reasoner.term

Local variables are the variables in reasoner terms.

ReasonerTerm - Interface in org.linqs.psl.reasoner.term

recursiveDelete(String) - Static method in class org.linqs.psl.util.SystemUtils

recursiveDelete(File) - Static method in class org.linqs.psl.util.SystemUtils

Reflection - Class in org.linqs.psl.util

Various utilties around objects and reflection.

registerPredicate(StandardPredicate) - Method in interface org.linqs.psl.database.DataStore

Registers a StandardPredicate so that GroundAtoms of that StandardPredicate can be persisted in this DataStore.

registerPredicate(StandardPredicate) - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore

relax(double, boolean) - Method in class org.linqs.psl.model.rule.arithmetic.UnweightedArithmeticRule

relax(double, boolean) - Method in class org.linqs.psl.model.rule.logical.UnweightedLogicalRule

relax(double, boolean) - Method in interface org.linqs.psl.model.rule.UnweightedRule

relaxationMultiplier - Variable in class org.linqs.psl.application.inference.InferenceApplication

relaxationSquared - Variable in class org.linqs.psl.application.inference.InferenceApplication

RELAXED_EPSILON - Static variable in class org.linqs.psl.util.MathUtils

RELAXED_EPSILON_FLOAT - Static variable in class org.linqs.psl.util.MathUtils

relaxHardConstraints - Variable in class org.linqs.psl.application.inference.InferenceApplication

relaxHardConstraints() - Method in class org.linqs.psl.application.inference.InferenceApplication

Relax hard constraints into weighted rules.

relDep - Variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel

releasePartitions(RDBMSDatabase) - Method in class org.linqs.psl.database.rdbms.RDBMSDataStore

remove() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator

remove() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator

removeCachedAtom(QueryAtom) - Method in class org.linqs.psl.database.atom.AtomCache

Removes an atom from the AtomCache

removeGroundRule(GroundRule) - Method in interface org.linqs.psl.grounding.GroundRuleStore

Removes a GroundRule from this store.

removeGroundRule(GroundRule) - Method in class org.linqs.psl.grounding.MemoryGroundRuleStore

O(n).

removeGroundRules(Rule) - Method in interface org.linqs.psl.grounding.GroundRuleStore

Removes all GroundRules that was instantiated by a given rule.

removeGroundRules(Rule) - Method in class org.linqs.psl.grounding.MemoryGroundRuleStore

O(n).

removePartition(Partition) - Method in class org.linqs.psl.database.rdbms.DataStoreMetadata

removeRule(Rule) - Method in class org.linqs.psl.model.Model

Removes a Rule from this Model.

repeat(String, int) - Static method in class org.linqs.psl.util.StringUtils

repeat(String, String, int) - Static method in class org.linqs.psl.util.StringUtils

reportAccessException(RuntimeException, GroundAtom) - Method in class org.linqs.psl.database.atom.AtomManager

Decide whether or not to throw an access exception.

reportAccessException(RuntimeException, GroundAtom) - Method in class org.linqs.psl.database.atom.LazyAtomManager

reportAccessException(RuntimeException, GroundAtom) - Method in class org.linqs.psl.database.atom.PersistedAtomManager

reportAccessException(RuntimeException, GroundAtom) - Method in class org.linqs.psl.database.atom.SimpleAtomManager

requiresSplit() - Method in class org.linqs.psl.model.rule.AbstractRule

requiresSplit() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule

requiresSplit() - Method in interface org.linqs.psl.model.rule.Rule

Check if this rule needs to be broken up into multiple rules.

reset() - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore

reset() - Method in class org.linqs.psl.reasoner.term.MemoryTermStore

reset() - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore

reset() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

reset() - Method in interface org.linqs.psl.reasoner.term.TermStore

Reset the existing terms for another round of inference.

resetLabels() - Method in class org.linqs.psl.model.predicate.model.ModelPredicate

resetLabels() - Method in class org.linqs.psl.model.predicate.model.SupportingModel

resolveClassName(String) - Static method in class org.linqs.psl.util.Reflection

Given a class's name (full or simple), resolve it to its full name.

ResultList - Interface in org.linqs.psl.database

List of substitutions for Variables in a Formula.

rewrite(Formula, RDBMSDataStore) - Method in class org.linqs.psl.database.rdbms.QueryRewriter

Rewrite the query to minimize the execution time while trading off query size.

rowVector(float[]) - Static method in class org.linqs.psl.util.FloatMatrix

rowVector(float[], boolean) - Static method in class org.linqs.psl.util.FloatMatrix

rule - Variable in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule

rule - Variable in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule

Rule - Interface in org.linqs.psl.model.rule

A template for functions that either constrain or measure the compatibility of the values of GroundAtom.

rules - Variable in class org.linqs.psl.application.inference.InferenceApplication

rules - Variable in class org.linqs.psl.model.Model

rules - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator

rules - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

run(double[]) - Method in class org.linqs.psl.application.learning.weight.search.Hyperband

Run and eval on the given weights using the given budget (ratio of max resources) and give back its score (lower is better).

run(double[]) - Method in class org.linqs.psl.application.learning.weight.search.InitialWeightHyperband

run() - Method in class org.linqs.psl.model.predicate.model.SupportingModel

Run the model and store the result internally.

run() - Method in class org.linqs.psl.util.Parallel.Worker

runModel() - Method in class org.linqs.psl.model.predicate.model.ModelPredicate

RUNTIME_COLLECTION_PERIOD - Static variable in class org.linqs.psl.config.Options

RUNTIME_STATS_COLLECT - Static variable in class org.linqs.psl.config.Options

RuntimeStats - Class in org.linqs.psl.util

A static class that collects runtime stats in the background.

RunTimings(long, long, long, long) - Constructor for class org.linqs.psl.util.Parallel.RunTimings

rvDB - Variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication

S

scale - Variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel

SCALE_FACTOR - Static variable in class org.linqs.psl.application.learning.weight.search.grid.ContinuousRandomGridSearch

scaleGradient - Variable in class org.linqs.psl.application.learning.weight.VotedPerceptron

scaleStepSize - Variable in class org.linqs.psl.application.learning.weight.VotedPerceptron

scalingWeights - Variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel

seed(int) - Static method in class org.linqs.psl.util.RandUtils

seenTermCount - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

SelectivityHistogram<T extends Comparable<? super T>> - Class in org.linqs.psl.database.rdbms

A histrogram that represents the distribution of values in a column.

SelectivityHistogram() - Constructor for class org.linqs.psl.database.rdbms.SelectivityHistogram

separatorString() - Method in class org.linqs.psl.model.formula.AbstractBranchFormula

separatorString() - Method in class org.linqs.psl.model.formula.Conjunction

separatorString() - Method in class org.linqs.psl.model.formula.Disjunction

set(Object) - Method in class org.linqs.psl.config.Option

Set the value (in the Config) for this Option.

set(int, int, float) - Method in class org.linqs.psl.util.FloatMatrix

setAccessException(boolean) - Method in class org.linqs.psl.model.atom.RandomVariableAtom

setBlasYKnownForTest(FloatMatrix) - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior

Only for testing.

setBlock(boolean) - Method in class org.linqs.psl.model.predicate.StandardPredicate

setBudget(double) - Method in class org.linqs.psl.application.inference.InferenceApplication

Set a budget (given as a proportion of the max budget).

setBudget(double) - Method in class org.linqs.psl.application.learning.weight.maxlikelihood.MaxPiecewisePseudoLikelihood

setBudget(double) - Method in class org.linqs.psl.application.learning.weight.search.grid.GuidedRandomGridSearch

setBudget(double) - Method in class org.linqs.psl.application.learning.weight.search.grid.RandomGridSearch

setBudget(double) - Method in class org.linqs.psl.application.learning.weight.search.InitialWeightHyperband

setBudget(double) - Method in class org.linqs.psl.application.learning.weight.VotedPerceptron

setBudget(double) - Method in class org.linqs.psl.application.learning.weight.WeightLearningApplication

Set a budget (give as a proportion of the max budget).

setBudget(double) - Method in class org.linqs.psl.reasoner.Reasoner

Set a budget (given as a proportion of the max budget).

setCategoryIndexes(int...) - Method in class org.linqs.psl.evaluation.statistics.CategoricalEvaluator

setColumnDefault(String, String, String) - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver

Set a default value for a column.

setConstant(float) - Method in class org.linqs.psl.reasoner.term.Hyperplane

setDefaultRandomVariables() - Method in class org.linqs.psl.application.learning.weight.VotedPerceptron

Set all RandomVariableAtoms we know of to their default values.

setEpsilonAbs(float) - Method in class org.linqs.psl.reasoner.admm.ADMMReasoner

setEpsilonRel(float) - Method in class org.linqs.psl.reasoner.admm.ADMMReasoner

setKernelForTest(GaussianProcessKernel) - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior

Only for testing.

setKnownDataStdInvForTest(FloatMatrix) - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior

Only for testing.

setLabel(RandomVariableAtom, float) - Method in class org.linqs.psl.model.predicate.model.ModelPredicate

setLabel(RandomVariableAtom, float) - Method in class org.linqs.psl.model.predicate.model.SupportingModel

setLabeledRandomVariables() - Method in class org.linqs.psl.application.learning.weight.VotedPerceptron

Set RandomVariableAtoms with training labels to their observed values.

setLagrange(float) - Method in class org.linqs.psl.reasoner.admm.term.LocalVariable

setNonNegative(boolean) - Method in class org.linqs.psl.reasoner.function.GeneralFunction

setPersisted(boolean) - Method in class org.linqs.psl.model.atom.RandomVariableAtom

setProperty(String, Object) - Static method in class org.linqs.psl.config.Config

Set a property, this will replace any previously set values.

setSquared(boolean) - Method in class org.linqs.psl.reasoner.function.GeneralFunction

setupTable(Connection, DatabaseDriver) - Method in class org.linqs.psl.database.rdbms.PredicateInfo

setValue(float) - Method in class org.linqs.psl.model.atom.RandomVariableAtom

Sets the truth value of this Atom.

setValue(float) - Method in class org.linqs.psl.reasoner.admm.term.LocalVariable

setVariable(Variable, int) - Method in class org.linqs.psl.database.rdbms.RDBMSResultList

setWeight(double) - Method in class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule

setWeight(double) - Method in class org.linqs.psl.model.rule.arithmetic.WeightedGroundArithmeticRule

setWeight(double) - Method in class org.linqs.psl.model.rule.logical.WeightedGroundLogicalRule

setWeight(double) - Method in class org.linqs.psl.model.rule.logical.WeightedLogicalRule

setWeight(double) - Method in interface org.linqs.psl.model.rule.WeightedGroundRule

Sets a weight for this WeightedGroundRule.

setWeight(double) - Method in interface org.linqs.psl.model.rule.WeightedRule

setWork(int, T) - Method in class org.linqs.psl.util.Parallel.Worker

SGD_LEARNING_RATE - Static variable in class org.linqs.psl.config.Options

SGD_MAX_ITER - Static variable in class org.linqs.psl.config.Options

SGD_MOVEMENT - Static variable in class org.linqs.psl.config.Options

SGD_MOVEMENT_THRESHOLD - Static variable in class org.linqs.psl.config.Options

SGDInference - Class in org.linqs.psl.application.inference.mpe

Use an SGD reasoner to perform MPE inference.

SGDInference(List<Rule>, Database) - Constructor for class org.linqs.psl.application.inference.mpe.SGDInference

SGDMemoryTermStore - Class in org.linqs.psl.reasoner.sgd.term

An in-memory TermStore specifically for SDG terms.

SGDMemoryTermStore() - Constructor for class org.linqs.psl.reasoner.sgd.term.SGDMemoryTermStore

SGDObjectiveTerm - Class in org.linqs.psl.reasoner.sgd.term

A term in the objective to be optimized by a SGDReasoner.

SGDObjectiveTerm(VariableTermStore<SGDObjectiveTerm, RandomVariableAtom>, boolean, boolean, Hyperplane<RandomVariableAtom>, float, float) - Constructor for class org.linqs.psl.reasoner.sgd.term.SGDObjectiveTerm

SGDReasoner - Class in org.linqs.psl.reasoner.sgd

Uses an SGD optimization method to optimize its GroundRules.

SGDReasoner() - Constructor for class org.linqs.psl.reasoner.sgd.SGDReasoner

SGDStreamingCacheIterator - Class in org.linqs.psl.reasoner.sgd.term

SGDStreamingCacheIterator(SGDStreamingTermStore, boolean, List<SGDObjectiveTerm>, List<SGDObjectiveTerm>, ByteBuffer, ByteBuffer, boolean, int[], boolean, int) - Constructor for class org.linqs.psl.reasoner.sgd.term.SGDStreamingCacheIterator

SGDStreamingInference - Class in org.linqs.psl.application.inference.mpe

Use streaming grounding and inference with an SGD reasoner.

SGDStreamingInference(List<Rule>, Database) - Constructor for class org.linqs.psl.application.inference.mpe.SGDStreamingInference

SGDStreamingInitialRoundIterator - Class in org.linqs.psl.reasoner.sgd.term

Iterate over all the terms that come up from grounding.

SGDStreamingInitialRoundIterator(SGDStreamingTermStore, List<WeightedRule>, AtomManager, HyperplaneTermGenerator<SGDObjectiveTerm, RandomVariableAtom>, List<SGDObjectiveTerm>, List<SGDObjectiveTerm>, ByteBuffer, ByteBuffer, int) - Constructor for class org.linqs.psl.reasoner.sgd.term.SGDStreamingInitialRoundIterator

SGDStreamingTermStore - Class in org.linqs.psl.reasoner.sgd.term

A term store that iterates over ground queries directly (obviating the GroundRuleStore).

SGDStreamingTermStore(List<Rule>, AtomManager) - Constructor for class org.linqs.psl.reasoner.sgd.term.SGDStreamingTermStore

SGDTermGenerator - Class in org.linqs.psl.reasoner.sgd.term

A TermGenerator for SGD objective terms.

SGDTermGenerator() - Constructor for class org.linqs.psl.reasoner.sgd.term.SGDTermGenerator

sha(String) - Static method in class org.linqs.psl.util.Hash

sha(byte[]) - Static method in class org.linqs.psl.util.Hash

sha256(String) - Static method in class org.linqs.psl.util.Hash

sha256(byte[]) - Static method in class org.linqs.psl.util.Hash

shuffle() - Method in class org.linqs.psl.reasoner.term.MemoryTermStore

shuffle(List<?>) - Static method in class org.linqs.psl.util.RandUtils

shuffleMap - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator

shuffleMap - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

When we shuffle pages, we need to know how they were shuffled so the volatile cache can be writtten in the same order.

shufflePage - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator

shufflePage - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

signsMatch(int, int) - Static method in class org.linqs.psl.util.MathUtils

signsMatch(float, float) - Static method in class org.linqs.psl.util.MathUtils

signsMatch(double, double) - Static method in class org.linqs.psl.util.MathUtils

SimpleAtomManager - Class in org.linqs.psl.database.atom

AtomManager that does not provide any functionality beyond passing calls to underlying components.

SimpleAtomManager(Database) - Constructor for class org.linqs.psl.database.atom.SimpleAtomManager

SimplexSampler - Class in org.linqs.psl.application.learning.weight.maxlikelihood

SimplexSampler() - Constructor for class org.linqs.psl.application.learning.weight.maxlikelihood.SimplexSampler

simplify() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Add

simplify() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Cardinality

simplify() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Coefficient

Get a simplified version of this Coefficient, the Coefficient itself if it cannot be simplified further.

simplify() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.ConstantNumber

simplify() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Divide

simplify() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Max

simplify() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Min

simplify() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Multiply

simplify() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Subtract

size() - Method in class org.linqs.psl.database.rdbms.RDBMSResultList

size() - Method in class org.linqs.psl.database.rdbms.SelectivityHistogram

Get the number of rows represented by this histogram.

size() - Method in interface org.linqs.psl.database.ResultList

size() - Method in interface org.linqs.psl.grounding.GroundRuleStore

size() - Method in class org.linqs.psl.grounding.MemoryGroundRuleStore

size() - Method in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule

size - Variable in class org.linqs.psl.reasoner.admm.term.ADMMObjectiveTerm

size() - Method in class org.linqs.psl.reasoner.admm.term.ADMMObjectiveTerm

Get the number of variables in this term.

size() - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore

size() - Method in class org.linqs.psl.reasoner.dcd.term.DCDObjectiveTerm

size() - Method in class org.linqs.psl.reasoner.function.GeneralFunction

size() - Method in class org.linqs.psl.reasoner.sgd.term.SGDObjectiveTerm

size() - Method in class org.linqs.psl.reasoner.term.Hyperplane

size() - Method in class org.linqs.psl.reasoner.term.MemoryTermStore

size() - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore

size() - Method in interface org.linqs.psl.reasoner.term.ReasonerTerm

size() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

size() - Method in interface org.linqs.psl.reasoner.term.TermStore

size() - Method in class org.linqs.psl.util.FloatMatrix

SMALL_VALUE - Static variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior

smallFactorial(int) - Static method in class org.linqs.psl.util.MathUtils

sort(String) - Static method in class org.linqs.psl.util.StringUtils

space - Variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel

split() - Method in class org.linqs.psl.model.rule.AbstractRule

split() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule

split() - Method in interface org.linqs.psl.model.rule.Rule

Split this rule into multiple rules.

splitDouble(String, char) - Static method in class org.linqs.psl.util.StringUtils

splitDouble(String, String) - Static method in class org.linqs.psl.util.StringUtils

splitFloat(String, char) - Static method in class org.linqs.psl.util.StringUtils

splitFloat(String, String) - Static method in class org.linqs.psl.util.StringUtils

splitInt(String, char) - Static method in class org.linqs.psl.util.StringUtils

splitInt(String, String) - Static method in class org.linqs.psl.util.StringUtils

splitLong(String, char) - Static method in class org.linqs.psl.util.StringUtils

splitLong(String, String) - Static method in class org.linqs.psl.util.StringUtils

squared - Variable in class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule

squared - Variable in class org.linqs.psl.model.rule.logical.WeightedLogicalRule

SquaredExpKernel - Class in org.linqs.psl.application.learning.weight.bayesian

SquaredExpKernel() - Constructor for class org.linqs.psl.application.learning.weight.bayesian.SquaredExpKernel

SquaredExpKernel(float[]) - Constructor for class org.linqs.psl.application.learning.weight.bayesian.SquaredExpKernel

SquaredHingeLossTerm - Class in org.linqs.psl.reasoner.admm.term

ADMMReasoner objective term of the form
weight * [max(coefficients^T * x - constant, 0)]^2

SquaredHingeLossTerm(GroundRule, Hyperplane<LocalVariable>) - Constructor for class org.linqs.psl.reasoner.admm.term.SquaredHingeLossTerm

SquaredHyperplaneTerm - Class in org.linqs.psl.reasoner.admm.term

Objective term for an ADMMReasoner that is based on a squared hyperplane in some way.

SquaredHyperplaneTerm(GroundRule, Hyperplane<LocalVariable>) - Constructor for class org.linqs.psl.reasoner.admm.term.SquaredHyperplaneTerm

SquaredLinearLossTerm - Class in org.linqs.psl.reasoner.admm.term

ADMMReasoner objective term of the form
weight * (coeffs^T * x - constant)^2

SquaredLinearLossTerm(GroundRule, Hyperplane<LocalVariable>) - Constructor for class org.linqs.psl.reasoner.admm.term.SquaredLinearLossTerm

StandardPredicate - Class in org.linqs.psl.model.predicate

Predicate of GroundAtoms that can be persisted.

StandardPredicate(String, ConstantType[]) - Constructor for class org.linqs.psl.model.predicate.StandardPredicate

stopCollection() - Static method in class org.linqs.psl.util.RuntimeStats

STREAMING_TS_PAGE_LOCATION - Static variable in class org.linqs.psl.config.Options

STREAMING_TS_PAGE_SIZE - Static variable in class org.linqs.psl.config.Options

STREAMING_TS_RANDOMIZE_PAGE_ACCESS - Static variable in class org.linqs.psl.config.Options

STREAMING_TS_SHUFFLE_PAGE - Static variable in class org.linqs.psl.config.Options

STREAMING_TS_WARN_RULES - Static variable in class org.linqs.psl.config.Options

StreamingCacheIterator<T extends ReasonerTerm> - Class in org.linqs.psl.reasoner.term.streaming

Iterate over all the terms from the disk cache.

StreamingCacheIterator(StreamingTermStore<T>, boolean, List<T>, List<T>, ByteBuffer, ByteBuffer, boolean, int[], boolean, int) - Constructor for class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator

StreamingInitialRoundIterator<T extends ReasonerTerm> - Class in org.linqs.psl.reasoner.term.streaming

Iterate over all the terms that come up from grounding.

StreamingInitialRoundIterator(StreamingTermStore<T>, List<WeightedRule>, AtomManager, HyperplaneTermGenerator<T, RandomVariableAtom>, List<T>, List<T>, ByteBuffer, ByteBuffer, int) - Constructor for class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator

StreamingIterator<T extends ReasonerTerm> - Interface in org.linqs.psl.reasoner.term.streaming

Iterate over all the terms from grounding/cache.

StreamingTermStore<T extends ReasonerTerm> - Class in org.linqs.psl.reasoner.term.streaming

A term store that does not hold all the terms in memory, but instead keeps most terms on disk.

StreamingTermStore(List<Rule>, AtomManager, HyperplaneTermGenerator<T, RandomVariableAtom>) - Constructor for class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

STRICT_EPSILON - Static variable in class org.linqs.psl.util.MathUtils

STRICT_EPSILON_FLOAT - Static variable in class org.linqs.psl.util.MathUtils

StringAttribute - Class in org.linqs.psl.model.term

An Attribute that encapsulates a String.

StringAttribute(String) - Constructor for class org.linqs.psl.model.term.StringAttribute

Constructs a StringAttribute from a String

StringUtils - Class in org.linqs.psl.util

Various static String utilities.

sub(float) - Method in class org.linqs.psl.util.FloatMatrix

Scalar difference (not in-place).

sub(float, boolean) - Method in class org.linqs.psl.util.FloatMatrix

Scalar difference.

Subtract - Class in org.linqs.psl.model.rule.arithmetic.expression.coefficient

Subtract(Coefficient, Coefficient) - Constructor for class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Subtract

SummationAtom - Class in org.linqs.psl.model.rule.arithmetic.expression

A variant of an Atom that can additionally take SummationVariables as arguments.

SummationAtom(Predicate, SummationVariableOrTerm[]) - Constructor for class org.linqs.psl.model.rule.arithmetic.expression.SummationAtom

SummationAtomOrAtom - Interface in org.linqs.psl.model.rule.arithmetic.expression

Either a SummationAtom or Atom.

summationMapping - Variable in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression

SummationVariable - Class in org.linqs.psl.model.rule.arithmetic.expression

Special argument to a Predicate in an SummationAtom.

SummationVariable(String) - Constructor for class org.linqs.psl.model.rule.arithmetic.expression.SummationVariable

SummationVariableOrTerm - Interface in org.linqs.psl.model.rule.arithmetic.expression

Either a SummationVariable or Term.

SupportingModel - Class in org.linqs.psl.model.predicate.model

A model that is used by a ModelPredicate.

SupportingModel() - Constructor for class org.linqs.psl.model.predicate.model.SupportingModel

SupportingModel.AtomIndexes - Class in org.linqs.psl.model.predicate.model

supportsBulkCopy() - Method in class org.linqs.psl.database.loading.Inserter

Some inserters backed with specific databases can do bulk copy operations.

supportsBulkCopy() - Method in interface org.linqs.psl.database.rdbms.driver.DatabaseDriver

Returns whether the underline database supports bulk copying operations.

supportsBulkCopy() - Method in class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver

supportsBulkCopy() - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver

supportsBulkCopy() - Method in class org.linqs.psl.database.rdbms.RDBMSInserter

supportsGroundingQueryRewriting() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule

supportsGroundingQueryRewriting() - Method in class org.linqs.psl.model.rule.logical.AbstractLogicalRule

supportsGroundingQueryRewriting() - Method in interface org.linqs.psl.model.rule.Rule

Does this rule support rewriting the grounding formual.

supportsIndividualGrounding() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractArithmeticRule

supportsIndividualGrounding() - Method in class org.linqs.psl.model.rule.logical.AbstractLogicalRule

supportsIndividualGrounding() - Method in interface org.linqs.psl.model.rule.Rule

Does this rule support grounding out single instances at a time.

supportsRule(Rule) - Method in class org.linqs.psl.reasoner.dcd.term.DCDStreamingTermStore

supportsRule(Rule) - Method in class org.linqs.psl.reasoner.sgd.term.SGDStreamingTermStore

supportsRule(Rule) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

Check if this term store supports this rule.

syncAtoms() - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore

syncAtoms() - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

syncAtoms() - Method in interface org.linqs.psl.reasoner.term.VariableTermStore

Ensure that all the variable atoms have the same value as the array returned by getVariableValues().

SystemUtils - Class in org.linqs.psl.util

Utilities for interfacing with a filesystem.

T

tableName() - Method in class org.linqs.psl.database.rdbms.PredicateInfo

TableStats - Class in org.linqs.psl.database.rdbms

A container for statistics about a table.

TableStats(int) - Constructor for class org.linqs.psl.database.rdbms.TableStats

Term - Interface in org.linqs.psl.model.term

An argument to a Predicate.

termBuffer - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator

termBuffer - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator

termBuffer - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

The IO buffer for terms.

termCache - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator

termCache - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator

termCache - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

Terms in the current page.

termCount - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator

termGenerator - Variable in class org.linqs.psl.application.inference.InferenceApplication

termGenerator - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator

termGenerator - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

TermGenerator<T extends ReasonerTerm,V extends ReasonerLocalVariable> - Interface in org.linqs.psl.reasoner.term

termPagePaths - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

termPool - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator

termPool - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator

termPool - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

Terms that we will reuse when we start pulling from the cache.

termStore - Variable in class org.linqs.psl.application.inference.InferenceApplication

TermStore<T extends ReasonerTerm,V extends ReasonerLocalVariable> - Interface in org.linqs.psl.reasoner.term

A place to store terms that are to be optimized.

toJSON() - Method in class org.linqs.psl.config.Option

tolerance - Variable in class org.linqs.psl.reasoner.Reasoner

toPrimitiveDoubleArray(List<? extends Double>) - Static method in class org.linqs.psl.util.ListUtils

toPrimitiveFloatArray(List<? extends Float>) - Static method in class org.linqs.psl.util.ListUtils

toPrimitiveIntArray(List<? extends Integer>) - Static method in class org.linqs.psl.util.ListUtils

toPrimitiveLongArray(List<? extends Long>) - Static method in class org.linqs.psl.util.ListUtils

toString() - Method in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior.WeightConfig

toString() - Method in class org.linqs.psl.application.learning.weight.TrainingMap

toString() - Method in class org.linqs.psl.config.Option

toString() - Method in class org.linqs.psl.database.Partition

toString() - Method in class org.linqs.psl.database.rdbms.RDBMSResultList

toString() - Method in class org.linqs.psl.database.rdbms.SelectivityHistogram

toString() - Method in class org.linqs.psl.model.atom.Atom

toString() - Method in class org.linqs.psl.model.formula.AbstractBranchFormula

toString() - Method in class org.linqs.psl.model.formula.FormulaAnalysis.DNFClause

toString() - Method in class org.linqs.psl.model.formula.Implication

toString() - Method in class org.linqs.psl.model.formula.Negation

toString() - Method in class org.linqs.psl.model.Model

toString() - Method in class org.linqs.psl.model.predicate.Predicate

toString() - Method in class org.linqs.psl.model.rule.arithmetic.AbstractGroundArithmeticRule

toString() - Method in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression

toString() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Add

toString() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Cardinality

toString() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.ConstantNumber

toString() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Divide

toString() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Max

toString() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Min

toString() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Multiply

toString() - Method in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Subtract

toString() - Method in class org.linqs.psl.model.rule.arithmetic.expression.SummationAtom

toString() - Method in class org.linqs.psl.model.rule.arithmetic.expression.SummationVariable

toString() - Method in class org.linqs.psl.model.rule.arithmetic.UnweightedArithmeticRule

toString() - Method in class org.linqs.psl.model.rule.arithmetic.UnweightedGroundArithmeticRule

toString() - Method in class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule

toString() - Method in class org.linqs.psl.model.rule.arithmetic.WeightedGroundArithmeticRule

toString() - Method in class org.linqs.psl.model.rule.logical.AbstractGroundLogicalRule

toString() - Method in class org.linqs.psl.model.rule.logical.UnweightedGroundLogicalRule

toString() - Method in class org.linqs.psl.model.rule.logical.UnweightedLogicalRule

toString() - Method in class org.linqs.psl.model.rule.logical.WeightedGroundLogicalRule

toString() - Method in class org.linqs.psl.model.rule.logical.WeightedLogicalRule

toString() - Method in class org.linqs.psl.model.term.Constant

toString() - Method in interface org.linqs.psl.model.term.Term

toString() - Method in class org.linqs.psl.model.term.Variable

toString() - Method in class org.linqs.psl.reasoner.admm.term.LocalVariable

toString() - Method in class org.linqs.psl.reasoner.dcd.term.DCDObjectiveTerm

toString() - Method in class org.linqs.psl.reasoner.function.ConstraintTerm

toString() - Method in enum org.linqs.psl.reasoner.function.FunctionComparator

toString() - Method in class org.linqs.psl.reasoner.function.GeneralFunction

toString() - Method in class org.linqs.psl.reasoner.sgd.term.SGDObjectiveTerm

toString(VariableTermStore<SGDObjectiveTerm, RandomVariableAtom>) - Method in class org.linqs.psl.reasoner.sgd.term.SGDObjectiveTerm

toString() - Method in class org.linqs.psl.util.FloatMatrix

toString() - Method in class org.linqs.psl.util.Parallel.RunTimings

toStringWithValue() - Method in class org.linqs.psl.model.atom.GroundAtom

TrainingMap - Class in org.linqs.psl.application.learning.weight

A class that keeps tracks of the mapping between an RVA in one database (atom manager) and an observed atom in another (as well as unmapped (latent) variables).

TrainingMap(PersistedAtomManager, Database) - Constructor for class org.linqs.psl.application.learning.weight.TrainingMap

Initializes the training map of RandomVariableAtoms ObservedAtoms.

trainingMap - Variable in class org.linqs.psl.application.learning.weight.WeightLearningApplication

transpose() - Method in class org.linqs.psl.util.FloatMatrix

Transpose.

U

UniqueIntID - Class in org.linqs.psl.model.term

UniqueIntID(int) - Constructor for class org.linqs.psl.model.term.UniqueIntID

UniqueStringID - Class in org.linqs.psl.model.term

UniqueStringID(String) - Constructor for class org.linqs.psl.model.term.UniqueStringID

unitNormal - Variable in class org.linqs.psl.reasoner.admm.term.HyperplaneTerm

UnweightedArithmeticRule - Class in org.linqs.psl.model.rule.arithmetic

A template for UnweightedGroundArithmeticRules.

UnweightedArithmeticRule(ArithmeticRuleExpression) - Constructor for class org.linqs.psl.model.rule.arithmetic.UnweightedArithmeticRule

UnweightedArithmeticRule(ArithmeticRuleExpression, String) - Constructor for class org.linqs.psl.model.rule.arithmetic.UnweightedArithmeticRule

UnweightedArithmeticRule(ArithmeticRuleExpression, Map<SummationVariable, Formula>) - Constructor for class org.linqs.psl.model.rule.arithmetic.UnweightedArithmeticRule

UnweightedArithmeticRule(ArithmeticRuleExpression, Map<SummationVariable, Formula>, String) - Constructor for class org.linqs.psl.model.rule.arithmetic.UnweightedArithmeticRule

UnweightedGroundArithmeticRule - Class in org.linqs.psl.model.rule.arithmetic

An AbstractGroundArithmeticRule that is unweighted, i.e., it is a hard constraint that must always hold.

UnweightedGroundArithmeticRule(UnweightedArithmeticRule, List<Float>, List<GroundAtom>, FunctionComparator, float) - Constructor for class org.linqs.psl.model.rule.arithmetic.UnweightedGroundArithmeticRule

UnweightedGroundArithmeticRule(UnweightedArithmeticRule, float[], GroundAtom[], FunctionComparator, float) - Constructor for class org.linqs.psl.model.rule.arithmetic.UnweightedGroundArithmeticRule

UnweightedGroundLogicalRule - Class in org.linqs.psl.model.rule.logical

UnweightedGroundLogicalRule(UnweightedLogicalRule, List<GroundAtom>, List<GroundAtom>, short) - Constructor for class org.linqs.psl.model.rule.logical.UnweightedGroundLogicalRule

UnweightedGroundRule - Interface in org.linqs.psl.model.rule

UnweightedLogicalRule - Class in org.linqs.psl.model.rule.logical

UnweightedLogicalRule(Formula) - Constructor for class org.linqs.psl.model.rule.logical.UnweightedLogicalRule

UnweightedLogicalRule(Formula, String) - Constructor for class org.linqs.psl.model.rule.logical.UnweightedLogicalRule

UnweightedRule - Interface in org.linqs.psl.model.rule

A template for UnweightedGroundRules, which constrain the values that GroundAtoms can take.

updateDBStats() - Method in interface org.linqs.psl.database.rdbms.driver.DatabaseDriver

Make sure that all the database-level stats are up-to-date.

updateDBStats() - Method in class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver

updateDBStats() - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver

updateLagrange(float, float[]) - Method in class org.linqs.psl.reasoner.admm.term.ADMMObjectiveTerm

updateTableStats(PredicateInfo) - Method in interface org.linqs.psl.database.rdbms.driver.DatabaseDriver

Make sure that all the table statistics are up-to-date.

updateTableStats(PredicateInfo) - Method in class org.linqs.psl.database.rdbms.driver.H2DatabaseDriver

updateTableStats(PredicateInfo) - Method in class org.linqs.psl.database.rdbms.driver.PostgreSQLDriver

updateVariables() - Method in class org.linqs.psl.reasoner.admm.term.ADMMTermStore

Update the global variables (atoms) with the consensus values.

updateVariableValue(int, float, float) - Method in class org.linqs.psl.reasoner.term.MemoryVariableTermStore

updateVariableValue(int, float, float) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

updateVariableValue(int, float, float) - Method in interface org.linqs.psl.reasoner.term.VariableTermStore

Update the variable value at the given index.

V

v - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.Cardinality

validate(Formula) - Static method in class org.linqs.psl.database.DatabaseQuery

validateTypes(Predicate, ConstantType[]) - Static method in class org.linqs.psl.model.predicate.StandardPredicate

value - Variable in class org.linqs.psl.model.atom.GroundAtom

value - Variable in class org.linqs.psl.model.rule.arithmetic.expression.coefficient.ConstantNumber

VALUE_COLUMN_NAME - Static variable in class org.linqs.psl.database.rdbms.PredicateInfo

ValueAndStd() - Constructor for class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior.ValueAndStd

ValueAndStd(float, float) - Constructor for class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior.ValueAndStd

valueAndStd - Variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior.WeightConfig

valueOf(String) - Static method in enum org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel.Space

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.linqs.psl.database.rdbms.driver.H2DatabaseDriver.Type

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.linqs.psl.database.rdbms.QueryRewriter.CostEstimator

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.linqs.psl.evaluation.statistics.CategoricalEvaluator.RepresentativeMetric

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.linqs.psl.evaluation.statistics.ContinuousEvaluator.RepresentativeMetric

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.linqs.psl.evaluation.statistics.DiscreteEvaluator.RepresentativeMetric

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.linqs.psl.evaluation.statistics.RankingEvaluator.RepresentativeMetric

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.linqs.psl.model.term.ConstantType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.linqs.psl.reasoner.function.FunctionComparator

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.linqs.psl.reasoner.InitialValue

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel.Space

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.linqs.psl.database.rdbms.driver.H2DatabaseDriver.Type

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.linqs.psl.database.rdbms.QueryRewriter.CostEstimator

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.linqs.psl.evaluation.statistics.CategoricalEvaluator.RepresentativeMetric

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.linqs.psl.evaluation.statistics.ContinuousEvaluator.RepresentativeMetric

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.linqs.psl.evaluation.statistics.DiscreteEvaluator.RepresentativeMetric

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.linqs.psl.evaluation.statistics.RankingEvaluator.RepresentativeMetric

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.linqs.psl.model.term.ConstantType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.linqs.psl.reasoner.function.FunctionComparator

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.linqs.psl.reasoner.InitialValue

Returns an array containing the constants of this enum type, in the order they are declared.

Variable - Class in org.linqs.psl.model.term

A variable Term.

Variable(String) - Constructor for class org.linqs.psl.model.term.Variable

Constructs a Variable, given a name.

variables - Variable in class org.linqs.psl.reasoner.admm.term.ADMMObjectiveTerm

variables - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

VariableTermStore<T extends ReasonerTerm,V extends ReasonerLocalVariable> - Interface in org.linqs.psl.reasoner.term

An interface for term stores that can handle some variable operations.

VariableTypeMap - Class in org.linqs.psl.model.term

A hashed storage class for arguments, keyed on their associated variables.

VariableTypeMap() - Constructor for class org.linqs.psl.model.term.VariableTypeMap

VARIANCE - Static variable in class org.linqs.psl.application.learning.weight.search.Hyperband

vars - Variable in class org.linqs.psl.model.rule.arithmetic.expression.ArithmeticRuleExpression

Version - Class in org.linqs.psl.util

Get versioning information about the project.

volatileBuffer - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator

volatileBuffer - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator

volatileBuffer - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

The IO buffer for volatile values.

volatilePagePaths - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

VotedPerceptron - Class in org.linqs.psl.application.learning.weight

Learns new weights for the weighted rules in a model using the voted perceptron algorithm.

VotedPerceptron(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.VotedPerceptron

W

warnRules - Variable in class org.linqs.psl.reasoner.term.streaming.StreamingTermStore

weight - Variable in class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule

weight - Variable in class org.linqs.psl.model.rule.logical.WeightedLogicalRule

WeightConfig(float[]) - Constructor for class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior.WeightConfig

WeightConfig(GaussianProcessPrior.WeightConfig) - Constructor for class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior.WeightConfig

WeightConfig(float[], float, float) - Constructor for class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessPrior.WeightConfig

weighted - Variable in class org.linqs.psl.application.learning.weight.bayesian.GaussianProcessKernel

WeightedArithmeticRule - Class in org.linqs.psl.model.rule.arithmetic

WeightedArithmeticRule(ArithmeticRuleExpression, double, boolean) - Constructor for class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule

WeightedArithmeticRule(ArithmeticRuleExpression, double, boolean, String) - Constructor for class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule

WeightedArithmeticRule(ArithmeticRuleExpression, Map<SummationVariable, Formula>, double, boolean) - Constructor for class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule

WeightedArithmeticRule(ArithmeticRuleExpression, Map<SummationVariable, Formula>, double, boolean, String) - Constructor for class org.linqs.psl.model.rule.arithmetic.WeightedArithmeticRule

WeightedGroundArithmeticRule - Class in org.linqs.psl.model.rule.arithmetic

WeightedGroundArithmeticRule(WeightedArithmeticRule, List<Float>, List<GroundAtom>, FunctionComparator, float) - Constructor for class org.linqs.psl.model.rule.arithmetic.WeightedGroundArithmeticRule

WeightedGroundArithmeticRule(WeightedArithmeticRule, float[], GroundAtom[], FunctionComparator, float) - Constructor for class org.linqs.psl.model.rule.arithmetic.WeightedGroundArithmeticRule

WeightedGroundLogicalRule - Class in org.linqs.psl.model.rule.logical

WeightedGroundLogicalRule(WeightedLogicalRule, List<GroundAtom>, List<GroundAtom>, short) - Constructor for class org.linqs.psl.model.rule.logical.WeightedGroundLogicalRule

WeightedGroundRule - Interface in org.linqs.psl.model.rule

WeightedLogicalRule - Class in org.linqs.psl.model.rule.logical

WeightedLogicalRule(Formula, double, boolean) - Constructor for class org.linqs.psl.model.rule.logical.WeightedLogicalRule

WeightedLogicalRule(Formula, double, boolean, String) - Constructor for class org.linqs.psl.model.rule.logical.WeightedLogicalRule

WeightedRule - Interface in org.linqs.psl.model.rule

WeightLearningApplication - Class in org.linqs.psl.application.learning.weight

Abstract class for learning the weights of weighted mutableRules from data for a model.

WeightLearningApplication(List<Rule>, Database, Database) - Constructor for class org.linqs.psl.application.learning.weight.WeightLearningApplication

WLA_CRGS_BASE_WEIGHT - Static variable in class org.linqs.psl.config.Options

WLA_CRGS_MAX_LOCATIONS - Static variable in class org.linqs.psl.config.Options

WLA_CRGS_SCALE_ORDERS - Static variable in class org.linqs.psl.config.Options

WLA_CRGS_VARIANCE - Static variable in class org.linqs.psl.config.Options

WLA_EM_ITERATIONS - Static variable in class org.linqs.psl.config.Options

WLA_EM_TOLERANCE - Static variable in class org.linqs.psl.config.Options

WLA_EVAL - Static variable in class org.linqs.psl.config.Options

WLA_GPP_EARLY_STOPPING - Static variable in class org.linqs.psl.config.Options

WLA_GPP_EXPLORATION - Static variable in class org.linqs.psl.config.Options

WLA_GPP_INITIAL_WEIGHT_STD - Static variable in class org.linqs.psl.config.Options

WLA_GPP_INITIAL_WEIGHT_VALUE - Static variable in class org.linqs.psl.config.Options

WLA_GPP_KERNEL_REL_DEP - Static variable in class org.linqs.psl.config.Options

WLA_GPP_KERNEL_SCALE - Static variable in class org.linqs.psl.config.Options

WLA_GPP_KERNEL_SPACE - Static variable in class org.linqs.psl.config.Options

WLA_GPP_MAX_CONFIGS - Static variable in class org.linqs.psl.config.Options

WLA_GPP_MAX_ITERATIONS - Static variable in class org.linqs.psl.config.Options

WLA_GPP_RANDOM_CONFIGS_ONLY - Static variable in class org.linqs.psl.config.Options

WLA_GRGS_EXPLORE_LOCATIONS - Static variable in class org.linqs.psl.config.Options

WLA_GRGS_SEED_LOCATIONS - Static variable in class org.linqs.psl.config.Options

WLA_GS_POSSIBLE_WEIGHTS - Static variable in class org.linqs.psl.config.Options

WLA_HB_BRACKET_SIZE - Static variable in class org.linqs.psl.config.Options

WLA_HB_NUM_BRACKETS - Static variable in class org.linqs.psl.config.Options

WLA_HB_SURVIVAL - Static variable in class org.linqs.psl.config.Options

WLA_HEM_ADAGRAD - Static variable in class org.linqs.psl.config.Options

WLA_INFERENCE - Static variable in class org.linqs.psl.config.Options

WLA_IWHB_WLA - Static variable in class org.linqs.psl.config.Options

WLA_LMLE_MAX_ROUNDS - Static variable in class org.linqs.psl.config.Options

WLA_MPPLE_NUM_SAMPLES - Static variable in class org.linqs.psl.config.Options

WLA_PDL_ADMM_STEPS - Static variable in class org.linqs.psl.config.Options

WLA_PDL_WARMUP_ROUNDS - Static variable in class org.linqs.psl.config.Options

WLA_RANDOM_WEIGHTS - Static variable in class org.linqs.psl.config.Options

WLA_RGS_MAX_LOCATIONS - Static variable in class org.linqs.psl.config.Options

WLA_RS_SCALING_FACTORS - Static variable in class org.linqs.psl.config.Options

WLA_VP_AVERAGE_STEPS - Static variable in class org.linqs.psl.config.Options

WLA_VP_CLIP_NEGATIVE_WEIGHTS - Static variable in class org.linqs.psl.config.Options

WLA_VP_CUT_OBJECTIVE - Static variable in class org.linqs.psl.config.Options

WLA_VP_INERTIA - Static variable in class org.linqs.psl.config.Options

WLA_VP_L1 - Static variable in class org.linqs.psl.config.Options

WLA_VP_L2 - Static variable in class org.linqs.psl.config.Options

WLA_VP_NUM_STEPS - Static variable in class org.linqs.psl.config.Options

WLA_VP_SCALE_GRADIENT - Static variable in class org.linqs.psl.config.Options

WLA_VP_SCALE_STEP - Static variable in class org.linqs.psl.config.Options

WLA_VP_STEP - Static variable in class org.linqs.psl.config.Options

WLA_VP_ZERO_INITIAL_WEIGHTS - Static variable in class org.linqs.psl.config.Options

work(int, T) - Method in class org.linqs.psl.util.Parallel.Worker

Do the actual work.

Worker() - Constructor for class org.linqs.psl.util.Parallel.Worker

workerWaitTimeMS - Variable in class org.linqs.psl.util.Parallel.RunTimings

workerWorkTimeMS - Variable in class org.linqs.psl.util.Parallel.RunTimings

WritableDatabase - Interface in org.linqs.psl.database

A database for persisting GroundAtoms.

writeFixedValues(ByteBuffer) - Method in class org.linqs.psl.reasoner.dcd.term.DCDObjectiveTerm

Write a binary representation of the fixed values of this term to a buffer.

writeFixedValues(ByteBuffer) - Method in class org.linqs.psl.reasoner.sgd.term.SGDObjectiveTerm

Write a binary representation of the fixed values of this term to a buffer.

writeFullPage(String, String) - Method in class org.linqs.psl.reasoner.dcd.term.DCDStreamingInitialRoundIterator

writeFullPage(String, String) - Method in class org.linqs.psl.reasoner.sgd.term.SGDStreamingInitialRoundIterator

writeFullPage(String, String) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingInitialRoundIterator

Write a full page (including any volatile page that the child may use).

writeID - Variable in class org.linqs.psl.database.Database

writeModel(BufferedWriter, TermStore) - Method in class org.linqs.psl.reasoner.ExecutableReasoner

writePartition - Variable in class org.linqs.psl.database.Database

The partition ID in which this database writes.

writeVolatilePage(String) - Method in class org.linqs.psl.reasoner.dcd.term.DCDStreamingCacheIterator

writeVolatilePage(String) - Method in class org.linqs.psl.reasoner.sgd.term.SGDStreamingCacheIterator

writeVolatilePage(String) - Method in class org.linqs.psl.reasoner.term.streaming.StreamingCacheIterator

Write a cache page to disk.

Z

zeroes(int, int) - Static method in class org.linqs.psl.util.FloatMatrix

Make a zero matrix.

zeroInitialWeights - Variable in class org.linqs.psl.application.learning.weight.VotedPerceptron

A B C D E F G H I J K L M N O P Q R S T U V W Z